New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 1059497	69 (1.200)	5 (0.100)	5/306	NT	7.6%	coding (272/615 nt)	PP_0916	Amino acid transporter LysE
	?	AE015451	= 1059479	59 (1.140)					coding (290/615 nt)	PP_0916	Amino acid transporter LysE

CACGCCGCGCCAATGGCCAGGGTCGAGAACCACAGCAGCGAAGCGCTGGCCGCACCGGCCACGTAGGCGCCAGGGGCGGACTGCTGAGCGCCCAGCGAGCCGATCAGCAACACGGTGTCGAGGTACACGTGCGGGTTCAGCAGGGTCACCGCCAGGGCGCTGAGCAGTACGGCGCGACGTGAGCGAACGCCTTGGCCTTGCTGGTGCTGCAGGCTCTGCTTGGAGCAGGCGCTGCGCAGCGCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/1059254‑1059497 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggcgctgcgcagcgcctGCTCCAAGCAGAGCCTGCAGCACCAGCAAGGCCAAGGCGTTCGCTCACGTCGCGCCGTACTGCTCAGCGCCCTGGCGGTGACCCTGCTGAACCCGCACGTGTACCTCGACACCGTGTTGCTGATCGGCTCGCTGGGCGCTCAGCAGTCCGCCCCTGGCGCCTACGTGGCCGGTGCGGCCAGCGCTTCGCTGCTGTGGTTCTC  <  AE015451/1059479‑1059278                                                                                                                                                                                                                                                                                                                                                                                                                                                                CACGCCGCGCCAATGGCCAGGGTCGAGAACCACAGCAGCGAAGCGCTGGCCGCACCGGCCACGTAGGCGCCAGGGGCGGACTGCTGAGCGCCCAGCGAGCCGATCAGCAACACGGTGTCGAGGTACACGTGCGGGTTCAGCAGGGTCACCGCCAGGGCGCTGAGCAGTACGGCGCGACGTGAGCGAACGCCTTGGCCTTGCTGGTGCTGCAGGCTCTGCTTGGAGCAGGCGCTGCG                                                                                                                                                                                                                    >  1:758592/1‑236                                                                TAGGCGCCAGGGGCGGACTGCCGAGCGACCAGCGAGCCGATCAGCAACACGGTGTCGAGGTACACGTGCGGGTTCAGCAGGGTCACCGCCAGGGCGCTGAGCAGTACGGCGCGACGTGAGCGAACGCCTTGGCCTTGCTGGTGCTGCAGGCTCTGCTTGGAGCAGGCGCTGCGCAGCGCCTGCTCCAAGCAGAGC                                                                                                                                                                                              <  1:788662/195‑1                                                                                                                  GGTGTCGAGGTACACGTGCGGGTTCAGCAGGGTCACCGCCAGGGCGCTGAGCAGTACGGCGCGACGTGAGCGAACGCCCTGGCCTTGCTGGTGCTGCAGGCTCTGCTTGGAGCAGGCGCTGCGCAGCGCCTGCTCCAAGCAGAGCCTGC                                                                                                                                                                                          <  1:9467/149‑1                                                                                                                                                    cCCGCCAGGGCGCTGAGCAGTACGGCGCGACGTGAGCGAACGCCTTGGCCTTGCTGGTGCTGCAGGCTCTGCTTGGAGCAGGCGCTGCGCAGCGCCTGCTCCAAGCAGAGCCTGCAGCACCAGCAAGGCCAAG                                                                                                                                                                        <  2:746601/132‑1                                                                                                                                                     CCGCCAGGGCGCTGAGCAGTACGGCGCGACGTGAGCGAACGCCTTGGCCTTGCTGGTGCTGCAGGCTCTGCTTGGAGCAGGCGCTGCGCAGCGCCTG                                                                                                                                                                                                           >  1:778108/1‑97                                                                                                                                                     CCGCCAGGGCGCTGAGCAGTACGGCGCGACGTGAGCGAACGCCTTGGCCTTGCTGGTGCTGCAGGCTCTGCTTGGAGCAGGCGCTGCGCAGCGCCTG                                                                                                                                                                                                           <  2:778105/97‑1                                                                                                                                                                CTGAGCAGTACGGCGCGACGTGAGCGAACGCCTTGGCCTTGCTGGTGCTGCAGGCTCTGCTTGGAGCAGGCGCTGCGCAGCGCCTGCTCCAAGCAGAGCCTGCAGCACC                                                                                                                                                                                    <  1:417774/109‑1                                                                                                                                                                                                          TGGTGCTGCAGGCTCTGCTTGGAGCAGGCGCTGCGCAGCGCCTGCTCCAAGCAGAGCCTGCAGCACCAGCAACGCCAAGGCGTGCGCTCAC                                                                                                                                                            >  2:272534/1‑91                                                                                                                                                                                                                                         TGCGCAGCGCCTGCTCCAAGCAGAGCCTGCAGCACCAGCAAGGCCAAGGCGTTCGCTCACGTCGCGCCGTACTGCTCAGCGCCCTGGCGGTGACCCTGCTGAACCCGCACGTGTACCTCGACACCGTGTTGCTGATCGGCTCGCTGGGCGCTCAGCAGTCCGCCCCTGGCGCCTACGTGGCCGGTGCGGCCA                        <  1:323822/192‑1                                                                                                                                                                                                                                           CGCAGCGCCTGCTCCAAGCAGAGCCTGCAGCACCAGCAAGGCCAAGGCGTTCGCTCACGTCGCGCCGTACTGCTCAGCGCCCTGGCGGTGACCCTGCTGAACCCGCACGTGTACCTCGACACCGTGTTGCTGATCGGCTCGCTGGGCGCTCAGCAGTCCGCCCCTGGCGCCTACGTGGCCGGTGCGGCCAGCGCTTCGCTGCTGTGGTTCTC  >  2:656808/1‑212                                                                                                                                                                                                                                                                                                                                                                                                                                                                CACGCCGCGCCAATGGCCAGGGTCGAGAACCACAGCAGCGAAGCGCTGGCCGCACCGGCCACGTAGGCGCCAGGGGCGGACTGCTGAGCGCCCAGCGAGCCGATCAGCAACACGGTGTCGAGGTACACGTGCGGGTTCAGCAGGGTCACCGCCAGGGCGCTGAGCAGTACGGCGCGACGTGAGCGAACGCCTTGGCCTTGCTGGTGCTGCAGGCTCTGCTTGGAGCAGGCGCTGCGCAGCGCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/1059254‑1059497 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggcgctgcgcagcgcctGCTCCAAGCAGAGCCTGCAGCACCAGCAAGGCCAAGGCGTTCGCTCACGTCGCGCCGTACTGCTCAGCGCCCTGGCGGTGACCCTGCTGAACCCGCACGTGTACCTCGACACCGTGTTGCTGATCGGCTCGCTGGGCGCTCAGCAGTCCGCCCCTGGCGCCTACGTGGCCGGTGCGGCCAGCGCTTCGCTGCTGTGGTTCTC  <  AE015451/1059479‑1059278

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.