New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	1246664 =	52 (0.900)	3 (0.060)	3/302	NT	6.6%	intergenic (+65/‑306)	PP_1087/argG	Outer membrane protein, OmpA family/Argininosuccinate synthase
	?	AE015451	1246730 =	39 (0.770)					intergenic (+131/‑240)	PP_1087/argG	Outer membrane protein, OmpA family/Argininosuccinate synthase

CGACAGCTTCTGACGACAAAGCGACAGGAACTTTCGTAGGGGCGACGGGCGGTAGGTTGAGGGATGTGGCATGAGGACCTTGGAGGGGCGTCGAGCCGCAGCGTGCATGCCTTGAGGAGTTCAGCGCCTGTGAGATCGAGCGCCGCCAGGTGTCCACCTCAAGACATTCTGCGCCTGTGAGATCGAGCGCCTCAGGTGTCCGCCTCGAAACATTCTGCGCTCGATCTCACAGGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/1246899‑1246664 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgctcgatctcacaggcgcAGAATGTCTTGAGGTGGACACCTGGCGGCGCTCGATCTCACAGGCGCTGAACTCCTCAAGGCATGCACGCTGCGGCTCGACGCCCCTCCAAGGTCCTCATGCCACATCCCTCAACCTACCGCCCGTCGCCCCTACGAAAGTTCCTGTCGCTTTGTCGTCAGAAGCTGTCGCCCCACTGTAAATTTATCCGCAACGCCGGTAGAATCGATCCCTTTCCGTACA  >  AE015451/1246730‑1246951                                                                                                                                                                                                                                                                                                                                                                                                                                                                            CGACAGCTTCTGACGACAAAGCGACAGGAACTTTCGTAGGGGCGACGGGCGGTAGGTTGAGGGATGTGGCATGAGGACCTTGGAGGGGCGTCGAGCCGCAGCGTGCATGCCTTGAGGAGTTCAGCGCCTGTGAGATCGAGCGCCGCCAGGTGTCCACCTCAAGTCATTCTGCGCCTGTGAGATCGAGCGCCTCAGGTGTCCGCCTCGAAACATTCTGCGCTCGATCTCACAGGCGC                                                                                                                                                                                                                                <  1:1023107/236‑1                             AACTTTCGTAGGGGCGACGGGCGGTAGGTTGAGGGATGTGGCATGAGGACCTTGGAGGGGCGTCGAGCCGCAGCGTGCATGCCTTGAGGAGTTCAGCGCCTGTGAGATCGAGCGCCGCCAGGTGTCCACCTCAAGACATTCTGCGCCTGTGAGATCGAGCGCCTCAGGTGTCCGCCTCGAAACATTCTGCGCTC                                                                                                                                                                                                                                              <  1:480751/194‑1                                                            AGGGATGTGGCCAGAGGACCTTGGAGGGGCGTCGAGCCGCAGCGTGCATGCCTTGAGGAGTTCAGCGCCTGTGAGATCGAGCGCCGCCAGGTGTCCACCTCAAGACATTCTGCGCCTGTGAGATCGAGCGCCTCAGGTGTCCGCCTCGAAACATTCTGCGCTCGATCTCACAGGCGCAGAATGTCTTGAGGTGGACACCTGGCGGCGCTCGATCTCACAGGCGC                                                                                                                                                                                 <  2:546659/224‑1                                                                                tgGGAGGGGCGTCGAGCCGCAGCGTGCATGCCTTGAGGAGTTCAGCGCCGGTGAGATCAAGCGCCGCCAGGTGTCCACCTCAAGACATTCTGCGCCTGTGAGATCGAGCGCCTCAGGTGTCCGCCTCGAAACATTCTGCGCTC                                                                                                                                                                                                                                              <  2:86721/141‑1                                                                                                CCGCAGCGTGCATGCCTTGAGGAGTTCAGCGCCTGTGAGATCGAGCGCCGCCAGGTGTCCACCTCAAGACATTCTGCGCCTGTGAGATCGAGCGCCTCAGGTGTCCGCCTCGAAACATTCTGCGCTCGATCTCACAGGCGCAGAAT                                                                                                                                                                                                                           <  2:177175/146‑1                                                                                                                                          GAGCGCCGCCAGGTGTCCACCTCAAGGCATTCTGCGCCTGTGAGATCGAGCGCCTCAGGTGTCCGCCTCGAAACATTCTGCGCTCGATCTCACAGGCGCAGAATGTCTTG                                                                                                                                                                                                                     <  1:164592/110‑1                                                                                                                                            GCGCCGCCAGGTGTCCACCTCAAGACATTCTGCGCCTGTGAGATCGAGCGCCTCAGGTGTCCGCCTCGAAACATTCTGCGCTCGATCTCACAGGCGCAGAATGTCTTGAGGTGGACACCTGGCGGCGCTCGATCTCACAGGCGCT                                                                                                                                                                                <  2:1029933/145‑1                                                                                                                                                                                                                         GCGCTCGATCTCACAGGCGCAGAATGTCTTGAGGTGGACACCTGGCGGCGCTCGATCTCACAGGCGCTGAACTCCTCAAGGCATGCACGCTGCGGCTCGACGCCCCTCCAAGGTCCTCATGCCACATCCTTCAACCTACCGCCCGTCGCCCCTACGAAAGTTCCTGTCGCTTTGTCGTCAGAAGCTGTCGCCCCACTGTAAATTTATCCGCAACGCCGGTAGAATCGATCCCTTT         <  1:561651/235‑1                                                                                                                                                                                                                         GCGCTCGATCTCACAGGCGCAGAATGTCTTGAGGTGGACACCTGGCGGCGCTCGATCTCACAGGCGCTGAACTCCTCAAGGCATGCACGCTGCGGCTCGACGCCCCTCCAAGGTCCTCATGCCACATCCCTCAACCTACCGCCCGTCGCCCCT                                                                                           <  2:111575/153‑1                                                                                                                                                                                                                            CTCGATCTCACAGGCGCAGAATGTCTTGAGGTGGACACCTGGCGGCGCTCGATCTCACAGGCGCTGAACTCCTCAAGGCATGCACGCTGCGGCTCGACGCCCCTCCAAGGTCCTCATGCCACATCCCTCAACCTACCGCCCGTCGCCCCTACGAAAGTTCCTGTCGCTTTGTCGTCAGAAGCTGTCG                                                      <  1:813356/187‑1                                                                                                                                                                                                                             TCGATCTCACAGGCGCAGAATGTCTTGAGGTGGACACCTGGCGGCGCTCGATCTCACAGGCGCTGAACTCCTCAAGGCATGCACGCTGCGGCTCGACGCCCCTCCAAGGTCCTCATGCCACATCCCTCAACCTACCGCCCGTCGCCCCTACGAAAGTTCCTGTCGCTTTGTCGTCAGAAGCTGTCGCCCCACTGTAAATTTATCCGCAACGCCGGTAGAATCGATCCCTTTCCGT     <  1:1009366/235‑1                                                                                                                                                                                                                               GATCTCACAGGCGCAGAATGTCTTGAGGTGGACACCTGGCGGCGCTCGATCTCACAGGCGCTGAACTCCTCAAGGCATGCACGCTGCGGCTCGACGCCCCTCCAAGGTCCTCATGCCACATCCCTCAACCTACCGCCCGTCGCCCCTACGAAAGTTCCTGTCGCTTTGTCGTCAGAAGCTGTCGCCCCACTGTAAATTTATCCGCAACGCCGGTAGAATCGATCCCTTTCCGTACA  >  1:309496/1‑236                                                                                                                                                                                                                               GATCTCACAGGCGCAGAATGTCTTGAGGTGGACACCTGGCGGCGCTCGATCTCACAGGCGCTGAACTCCTCAAGGCATGCACGCTGCGGCTCGACGCCCCTCCAAGGTCCTCATGCCACATCCCTCAACCTACCGCCCGTCGCCCCTACGAAAGTTCCTGTCGCTTTGTCGTCAGAAGCTGTCGCCCCACTGTAAATTTATCCGCAACGCCGGTAGAATCGATCCCTTTCCGTACA  >  1:736742/1‑236                                                                                                                                                                                                                               GATCTCACAGGCGCAGAATGTCTTGAGGTGGACACCTGGCGGCGCTCGATCTCACAGGCGCTGAACTCCTCAAGGCATGCACGCTGCGGCTCGACGCCCCTCCAAGGTCCTCATGCCACATCCCTCAACCTACCGCCCGTCGCCCCTACGAAAGTTCCTGTCGCTTTGTCGTCAGAAGCTGTCGCCCCACTGTAAATTTATCCGCAACGCCGGTAGAATCGATCCCTTTCCGTAC   >  1:419534/1‑235                                                                                                                                                                                                                               GATCTCACAGGCGCAGAATGTCTTGAGGTGGACACCTGGCGGCGCTCGATCTCACAGGCGCTGAACTCCTCAAGGCATGCACGCTGCGGCTCGACGCCCCTCCAAGGTCCTCATGCCACATCCCTCAACCTACCGCCCGTCGCCCCTACGAAAGTGCCTGTCGCTGTGTCGTCcg                                                               >  1:245705/1‑173                                                                                                                                                                                                                                 TCTCACAGGCGCAGAATGTCTTGAGGTGGACACCTGGCGGCGCTCGATCTCACAGGCGCTGAACTCCTCAAGGCATCCACGCTGCGGCTCGACGCCCCTCCAAGGTCCTCATGCCACATCCCTCAACCTACCGCCCGTCGCCCCTACGAAAGTTCCTGTCGCTTTGTCGT                                                                  >  2:666487/1‑170                                                                                                                                                                                                                                     ACAGGCGCAGAATGTCTTGAGGTGGACACCTGGCGGCGCTCGATCTCACAGGCGCTGAACTCCTCAAGGCATGCACGCTGCGGCTCGACGCCCCTCCAAGGTCCTCATGCCACATCCCTCAACCTACCGCCCGTCGCCCCTACGAAAGTTCCTGTCGCTTTGTCGTCAGAAGCTGTCGCCCCACTGTAAATTTATCCGCAACGCCGGTAGAATCGATC              <  1:522443/218‑1                                                                                                                                                                                                                                            CAGAATGTCTTGAGGTGGACACCTGGCGGCGCTCGATCTCACAGGCGCTGAACTCCTCAAGGCATGCACGCTGCGGCTCGACGCCCCTCCAAGGTCCTCATGCCACATCCCTCAACCTACCGCCCGTCGCCCCTACGAAAGTTCCTGTCGCTTTGTCGTCAGAAGCTGTCGCCCCACTGTAAATTTATCCGCAACGCCGGTAGAATCG                 <  2:540633/208‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                            CGACAGCTTCTGACGACAAAGCGACAGGAACTTTCGTAGGGGCGACGGGCGGTAGGTTGAGGGATGTGGCATGAGGACCTTGGAGGGGCGTCGAGCCGCAGCGTGCATGCCTTGAGGAGTTCAGCGCCTGTGAGATCGAGCGCCGCCAGGTGTCCACCTCAAGACATTCTGCGCCTGTGAGATCGAGCGCCTCAGGTGTCCGCCTCGAAACATTCTGCGCTCGATCTCACAGGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/1246899‑1246664 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgctcgatctcacaggcgcAGAATGTCTTGAGGTGGACACCTGGCGGCGCTCGATCTCACAGGCGCTGAACTCCTCAAGGCATGCACGCTGCGGCTCGACGCCCCTCCAAGGTCCTCATGCCACATCCCTCAACCTACCGCCCGTCGCCCCTACGAAAGTTCCTGTCGCTTTGTCGTCAGAAGCTGTCGCCCCACTGTAAATTTATCCGCAACGCCGGTAGAATCGATCCCTTTCCGTACA  >  AE015451/1246730‑1246951

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.