New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	1246664 =	52 (0.900)	3 (0.060)	3/302	NT	6.6%	intergenic (+65/‑306)	PP_1087/argG	Outer membrane protein, OmpA family/Argininosuccinate synthase
	?	AE015451	1246730 =	39 (0.770)					intergenic (+131/‑240)	PP_1087/argG	Outer membrane protein, OmpA family/Argininosuccinate synthase

TATCCGCTCGCGAAGAACAACAGTGCGTCGAATCGGGCGCGTAATCGGCGGGTGAATATCGAGCTGGATCGGGTGGCGGTGGTTGAGAAACCGGTGGAAAAGCCGGTTGAGCAAGCGGCGCCGGGTGTTGCACCTGCCTCGGGCGTCCCGGGGGCGAAGGCGCCCTGAGATCTGGTCGGTGCATGTCATGGGCTCGCATCAAGGCCGCCAGGGGTTCGTCACAACATTTTCAGCGCCTGTGAGATCGAGCGCAGAATGTTTCGAGGCGGACACCTGAGGCGCTCGATCTCACAGGCGCAGAATGTCTTGAGGTGGACACCTGGCGGCGCTCGATCTCACAGGCGCTGAACTCCTCAAGGCATGCACGCTGCGGCTCGACGCCCCTCCAAGGTCCTCATGCCACATCCCTCAACCTACCGCCCGTCGCCCCTACGAAAGTTCCTGTCGCTTTGTCGTCAGAAGCTGTCG  >  AE015451/1246432‑1246899                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                            tATCCGCTCGCGAAGAACAACAGTGCGTCGAATCGGGCGCGTAATCGGCGGGTGAATATCGAGCTGGATCGGGTGGCGGTGGTTGAGAAACCGGTGGAAAAGCCGGTTGAGCAAGCGGCGCCGGGTGTTGCACCTGCCTCGGGCGTCCCGGGGGCGAAGGCGCCCTGAGATCTGGTCGGTGCATGTCATGGGCTCGCATCAAGGCCGCCAGGGGTTCGTCACAACATTTTCAgcgc                                                                                                                                                                                                                                          >  1:695752/1‑236 (MQ=255)        tCGCGAAGAACAACAGTGCGTCGAATCGGGCGCGTAATCGGCGGGTGAATATCGAGCTGGATCGGGTGGCGGTGGTTGAGAAACCGGTGGAAAAGCCGGTTGAGCAAGCGGCGCCGGGTGTTGCACCTGCCTCGGGCGTCCCGGGGGCGAAGGCGCCCTGAGATCTGGTCGGTGCATGTCATGGGCTCGCATCAAGGCCGCCAGGGGTTCGTCACAACATTTTCAGCGCCTGTgag                                                                                                                                                                                                                                   <  1:743220/236‑1 (MQ=255)           tgtacggaaagggatcgattctaccggcgttgcggataaatttacagtggggcgacagcttctgacgacaaagcgacaggaactttcgtaggggcgacgggcggtaggttgagggatgtggcatgaggaccttggaggggcgtcgagccgcagcgtgcatgccttgaggagttcagcgcctgtgagatcgagcgccgccaggtgtccacctcaagacattctGCGCCTGTGAGATc                                                                                                                                                                                                                                >  1:736742‑M1/223‑236 (MQ=255)           tgtacggaaagggatcgattctaccggcgttgcggataaatttacagtggggcgacagcttctgacgacaaagcgacaggaactttcgtaggggcgacgggcggtaggttgagggatgtggcatgaggaccttggaggggcgtcgagccgcagcgtgcatgccttgaggagttcagcgcctgtgagatcgagcgccgccaggtgtccacctcaagacattctGCGCCTGTGAGATc                                                                                                                                                                                                                                >  1:309496‑M1/223‑236 (MQ=255)            gtacggaaagggatcgattctaccggcgttgcggataaatttacagtggggcgacagcttctgacgacaaagcgacaggaactttcgtaggggcgacgggcggtaggttgagggatgtggcatgaggaccttggaggggcgtcgagccgcagcgtgcatgccttgaggagttcagcgcctgtgagatcgagcgccgccaggtgtccacctcaagacattctGCGCCTGTGAGATc                                                                                                                                                                                                                                >  1:419534‑M1/222‑235 (MQ=255)              agaaCAACAGTGCGTCGAATCGGGCGCGTAATCGGCGGGTGAATATCGAGCTGGATCGGGTGGCGGTGGTTGAGAAACCGGTGGAAAAGCCGGTTGAGCAAGCGGCGCCGGGTGTTGCACCTGCCTCGGGCGTCCCGGGGGCGAAGGCGCCCTGAGATCTGGTCGGTGCATGTCATGGGCTCGCATCAAGGCCGCCAGGGGTTCGTCACAACATTTTCAGCGCCTGTGAGATCGa                                                                                                                                                                                                                              <  1:609877/235‑1 (MQ=255)              acggaaagggatcgattctaccggcgttgcggataaatttacagtggggcgacagcttctgacgacaaagcgacaggaactttcgtaggggcgacgggcggtaggttgagggatgtggcatgaggaccttggaggggcgtcgagccgcagcgtgcatgccttgaggagttcagcgcctgtgagatcgagcgccgccaggtgtccacctcaagacattctGCGCCTGTGAGATCGa                                                                                                                                                                                                                              <  1:1009366‑M1/16‑1 (MQ=255)                  aaagggatcgattctaccggcgttgcggataaatttacagtggggcgacagcttctgacgacaaagcgacaggaactttcgtaggggcgacgggcggtaggttgaaggatgtggcatgaggaccttggaggggcgtcgagccgcagcgtgcatgccttgaggagttcagcgcctgtgagatcgagcgccgccaggtgtccacctcaagacattctGCGCCTGTGAGATCGAgcgc                                                                                                                                                                                                                          <  1:561651‑M1/20‑1 (MQ=255)                       gatcgattctaccggcgttgcggataaatttacagtggggcgacagcttctgacgacaaagcgacaggaactttcgtaggggcgacgggcggtaggttgagggatgtggcatgaggaccttggaggggcgtcgagccgcagcgtgcatgccttgaggagttcagcgcctgtgagatcgagcgccgccaggtgtccacctcaagacattctGCGCCtgt                                                                                                                                                                                                                                      <  1:522443‑M1/8‑1 (MQ=255)                          cgattctaccggcgttgcggataaatttacagtggggcgacagcttctgacgacaaagcgacaggaactttcgtaggggcgacgggcggtaggttgagggatgtggcatgaggaccttggaggggcgtcgagccgcagcgtgcatgccttgaggagttcagcgcctgtgagatcgagcgccgccaggtgtccacctcaagacattctg                                                                                                                                                                                                                                             <  2:540633‑M1/1‑1 (MQ=255)                             cGAATCGGGCGCGTAATCGGCGGGTGAATATCGAGCTGGATCGGGTGGCGGTGGTTGAGAAACCGGTGGAAAAGCCGGTTGAGCAAGCGGCGCCGGGTGTTGCACCTGCCTCGGGCGTCCCGGGGGCGAAGGCGCCCTGAGATCTGGTCGGTGCATGTCATGGGCTCGCATCAAGGCCGCCAGGGGTTCGTCACAACATTTTCAGCGCCTGTgag                                                                                                                                                                                                                                   >  1:808772/1‑215 (MQ=255)                             cGAATCGGGCGCGTAATCGGCGGGTGAATATCGAGCTGGATCGGGTGGCGGTGGTTGAGAAACCGGTGGAAAAGCCGGTTGAGCAAGCGGCGCCGGGTGTTGCACCTGCCTCGGGCGTCCCGGGGGCGAAGGCGCCCTGAGATCTGGTCGGTGCATGTCATGGGCTCGCATCAAGGCCGCCAGGGGTTCGTCACAACATTTTCAGCGCCTGTGAGATCGa                                                                                                                                                                                                                              >  2:1009363/1‑220 (MQ=255)                               aaTCGGGCGCGTAATCGGCGGGTGAATATCGAGCTGGATCGGGTGGCGGTGGTTGAGAAACCGGTGGAAAAGCCGGTTGAGCAAGCGGCGCCGGGTGTTGCACCTGCCTCGGGCGTCCCGGGGGCGAAGGCGCCCTGAGATCTGGTCGGTGCATGTCATGGGCTCGCATCAAGGCCGCCAGGGGTTCGTCACAACATTTTCAGCGCCTGTGAGATCGAGCGCCGAATGTTTCGAg                                                                                                                                                                                                             >  1:539781/1‑235 (MQ=255)                                                       aaTATCGAGCTGGATCGGGTGGCGGTGGTTGAGAAACCGGTGGAAAAGCCGGTTGAGCAAGCGGCGCCGGGTGTTGCACCTGCCTCGGGCGTCCCGGGGGCGAAGGCGCCCTGAGATCTGGTCGGTGCATGTCATGGGCTCGCATCAAGGCCGCCAGGGGTTCGTCACAACATTTTCAGCGCCTGTGAGATCGAGCGCAGAATGTTTCGAGGCGGACACCTGAGGCGCTCGAtctc                                                                                                                                                                                    <  1:544513/236‑1 (MQ=255)                                                          atCGAGCTGGATCGGGTGGCGGTGGTTGAGAAACCGGTGGAAAAGCCGGTTGAGCAAGCGGCGCCGGGTGTTGCACCTGCCTCGGGCGTCCCGGGGGCGAAGGCGCCCTGAGATCTGGTCGGTGCATGTCATGGGCTCGCATCAAGGCCGCCAGGGGTTCGTCACAACATTTTCAGCGCCTGTGAGATCGAGCGCAGAATGTTTCGAGGCGGACACCTGAGGCGCTCGATCTcac                                                                                                                                                                                  >  1:755481/1‑235 (MQ=255)                                                               cgacagcttctgacgacaaagcgacaggaactttcgtaggggcgacgggcggtaggttgagggatgtggcatgaggaccttggaggggcgtcgagccgcagcgtgcatgccttgaggagttcagcgcctgtgagatcgagcgccgccaggtgtccacctcaagacattctGCGCCTGTGAGATCGAg                                                                                                                                                                                                                             <  1:813356‑M1/17‑1 (MQ=255)                                                                        cggacgacacagcgacaggcactttcgtaggggcgacgggcggtaggttgagggatgtggcatgaggaccttggaggggcgtcgagccgcagcgtgcatgccttgaggagttcagcgcctgtgagatcgagcgccgccaggtgtccacctcaagacattctGCGCCTGTGAGATc                                                                                                                                                                                                                                >  1:245705‑M1/162‑175 (MQ=255)                                                                           acgacaaagcgacaggaactttcgtaggggcgacgggcggtaggttgagggatgtggcatgaggaccttggaggggcgtcgagccgcagcgtggatgccttgaggagttcagcgcctgtgagatcgagcgccgccaggtgtccacctcaagacattctGCGCCTGTgaga                                                                                                                                                                                                                                  >  2:666487‑M1/159‑170 (MQ=255)                                                                            gCGGTGGTTGAGAAACCGGTGGAAAAGCCGGTTGAGCAAGCGGCGCCGGGTGTTGCACCTGCCTCGGGCGTCCCGGGGGCGAAGGCGCCCTGAGATCTGGTCGGTGCATGTCATGGGCTCGCATCAAGGCCGCCAGGGGTTCGTCACAACATTTTCAGCGCCTGTGAGATCGAGCGCAGAATGTTTCGAGGCGGACACCTGAGGCGCTCGATCTCACAGgcgc                                                                                                                                                                            <  2:755478/223‑1 (MQ=255)                                                                                 ggtTGAGAAACCGGTGGAAAAGCCGGTTGAGCAAGCGGCGCCGGGTGTTGCACCTGCCTCGGGCGTCCCGGGGGCGAAGGCGCCCTGAGATCTGGTCGGTGCATGTCATGGGCTCGCATCAAGGCCGCCAGGGGTTCGTCACAACATTTTCAGCGCCTGTGAGATCGAGCGCAGAATGTTTCGAGGCGGACACCTGAGGCGCTCGATCTCACAGGCGCAGAATGTCTTGAgg                                                                                                                                                              >  1:848161/1‑232 (MQ=255)                                                                                      agaAACCGGTGGAAAAGCCGGTTGAGCAAGCGGCGCCGGGTGTTGCACCTGCCTCGGGCGTCCCGGGGGCGAAGGCGCCCTGAGATCTGGTCGGTGCATGTCATGGGCTCGCATCAAGGCCGCCAGGGGTTCGTCACAACATTTTCAGCGCCTGTGAGATCGAGCGCAGAATGTTTCGAGGCGGTCACCTGAGgcgc                                                                                                                                                                                            >  1:425062/1‑197 (MQ=255)                                                                                             ggTGGAAAAGCCGGTTGAGCAAGCGGCGCCGGGTGTTGCACCTGCCTCGGGCGTCCCGGGGGCGAAGGCGCCCTGAGATCTGGTCGGTGCATGTCATGGGCTCGCATCAAGGCCGCCAGGGGTTCGTCACAACATTTTCAGCGCCTGTGAGATCGAGCGCAGAATGTTTCGAGGCGGACACCTGAGGCGCTCGATCTCACAGGCGCAGAATGTCTTGAGGTGGACACCTggcgg                                                                                                                                                >  2:1032684/1‑234 (MQ=255)                                                                                                    aggggcgacgggcggtaggttgagggatgtggcatgaggaccttggaggggcgtcgagccgcagcgtgcatgccttgaggagttcagcgcctgtgagatcgagcgccgccaggtgtccacctcaagacattctGCGCCTGTGAGATCGAgcgc                                                                                                                                                                                                                          <  2:111575‑M1/20‑1 (MQ=255)                                                                                                            tGAGCAAGCGGCGCCGGGTGTTGCACCTGCCTCGGGCGTCCCGGGGGCGAAGGCGCCCTGAGATCTGGCCGTTGCATGTCATGGGCTCGCATCAAGGCCGCCAGGGGGTCGTCACAACATTTTCAGCGCCTGTGAGGTCGAGCGCAg                                                                                                                                                                                                                        >  2:824882/1‑147 (MQ=255)                                                                                                                            tgtgtTGCACCTGCCTCGGGCGTCCCGGGGGCGAAGGCGCCCTGAGATCTGGTCGGTGCATGTCATGGGCTCGCATCAAGGCCGCCAGGGGTTCGTCACAACATTTTCAGCGCCTGTGAGATCGAGCGCAGAATGTTTCGAGGCGGACACCTGAGGCGCTCGATCTCACAGgcgc                                                                                                                                                                            <  2:599590/174‑1 (MQ=255)                                                                                                                                   ccccTGCCTCGGGCGTCCCGGGGGCGAAGGCGCCCTGAGATCTGGTCGGTGCATGTCATGGGCTCGCATCAAGGCCGCCAGGGGTTCGTCACAACATTTTCAGCGCCTGTGAGATCGAGCGCAGAATGTTTCGAGGCg                                                                                                                                                                                                          <  2:113839/136‑1 (MQ=255)                                                                                                                                   cACCTGCCTCGGGCGTCCCGGGGGCGAAGGCGCCCTGAGATCTGGTCGGTGCATGTCATGGGCTCGCATCAAGGCCGCCAGGGGTTCGTCACAACATTTTCAGCGCCTGTGAGATCGAGCGCAGAATGTTTCGAg                                                                                                                                                                                                             <  1:351728/135‑1 (MQ=255)                                                                                                                                    cccTGCCTCGGGCGTCCCGGGGGCGAAGGCGCCCTGAGATCTGGTCGGTGCATGTCATGGGCTCGCATCAAGGCCGCCAGGGGTTCGTCACAACATTTTCAGCGCCTGTGAGATCGAGCGCAGAATGTTTCGAGGCGGACACCTGAGGCGCTCGATCTCACAGgcgc                                                                                                                                                                            <  2:184798/166‑1 (MQ=255)                                                                                                                                      cTGCCTCGGGCGTCCCGGGGGCGAAGGCGCCCTGAGATCTGGTCGGTGCATGTCATGGGCTCGCATCAAGGCCGCCAGGGGTTCGTCACAACATTTTCAGCGCCTGTGAGATCGAGCGCAGAATGTTTCGAGGCGGACACCTGAGGCGCTCGATCTCACAGGCGCAGAATGTCTTGAGGTGGACACCTGGCGGCGCTCGATCTCACAGGCGCTGAActc                                                                                                                      <  1:1006446/219‑1 (MQ=255)                                                                                                                                          cTCGGGCGTCCCGGGGGCGAAGGCGCCCTGAGATCTGGTCGGTGCATGTCATGGGCTCGCATCAAGGCCGCCAGGGGTTCGTCACAACATTTTCAGCGCCTGTGAGATCGAGCGCAGAATGTTTCGAGGCGGACACCTGAGGCGCTCGATCTCACAGGCGCAGAATGTCTTGAGGTGGACACCTGGCGGCGCTCGATCTCACAGGCGCTGAACTCCTCAAGGCATGCACGCTGCgg                                                                                                 <  1:758478/236‑1 (MQ=255)                                                                                                                                           tCGGGCGTCCCGGGGGCGAAGGCGCCCTGAGATCTGGTCGGTGCATGTCATGGGCTCGCATCAAGGCCGCCAGGGGTTCGTCACAACATTTTCAGCGCCTGTGAGATCGAGCGCAGAATGTTTCGAGGCGGACACCTGAGGCGCTCGATCTCACAGGCGCAGAATGTCTTGAGGTGGACACCTggcggc                                                                                                                                               >  1:323906/1‑189 (MQ=255)                                                                                                                                           tCGGGCGTCCCGGGGGCGAAGGCGCCCTGAGATCTGGTCGGTGCATGTCATGGGCTCGCATCAAGGCCGCCAGGGGTTCGTCACAACATTTTCAGCGCCTGTGAGATCGAGCGCAGAATGTTTCGAGGCGGACACCTGAGGCGCTCGATCTCACAGGCGCAGAATGTCTTGAGGTGGACACCTGGCGGCGCTCGATCTCACAGGCGCTGAACTCCTCAAGGCATGCCCGc                                                                                                      >  1:248884/1‑230 (MQ=255)                                                                                                                                           tCGGGCGTCCCGGGGGCGAAGGCGCCCTGAGATCTGGTCGGTGCATGTCATGGGCTCGCATCAAGGCCGCCAGGGGTTCGTCACAACATTTTCAGCGCCTGTGAGATCGAGCGCAGAATGTTTCGAGGCGGACACCTGAGGCGCTCGATCTCACAGGCGCAGAATGTCTTGAGGGGGACACCTGGCGGCGCTCGATCTCACAGGCGCTGAACTCCTCAAGGCATGCACGCTGCgg                                                                                                 >  1:179781/1‑235 (MQ=255)                                                                                                                                             gggCGTCCC‑GGGGCGAAGGCGCCCTGAGATCTGGTCGGTGCATGTCATGGGCTCGCATCAAGGCCGCCAGGGGTTCGTCACAACATTTTCAGCGCCTGTGAGATCGAGCGCAGAATGTTTCGAGGCGGACACCTGAGGCGCTCGATCTCACAGGCGCAGAATGTCTTGAGGTGGACACCTgg                                                                                                                                                   <  2:832909/182‑1 (MQ=255)                                                                                                                                              ggCGTCCCGGGGGCGAAGGCGCCCTGAGATCTGGTCGGTGCATGTCATGGGCTCGCATCAAGGCCGCCAGGGGTTCGTCACAACATTTTCAGCGCCTGTGAGATCGAGCGCAGAATGTTTCGAGGCGGACACCTGAGGCGCTCGATCTCACAGGCGCAGAATGTCTTGAGGTGGACACCTGGCGGCGCTCGATCTCACAGGCGCTGAACTCCTCAAGGCATGCACGCTGCGGCTCg                                                                                             <  1:751536/236‑1 (MQ=255)                                                                                                                                               gCGTCCCGGGGGCGAAGGCGCCCTGAGATCTGGTCGGTGCATGTCATGGGCTCGCATCAAGGCCGCCAGGGGTTCGTCACAACATTTTCAGCGCCTGTGAGATCGAGCGCAGAATGTTTCGAGGCGGACACCTGAGGCGCTCGATCTCACAGGCGCAGAATGTCTTGAGGTGGACACCTGGCGGCGCTCGATCTCACAGGCGCTGAACTCCTCa                                                                                                                  <  2:463811/214‑1 (MQ=255)                                                                                                                                               gCGTCCCGGGGGCGAAGGCGCCCTGAGATCTGGTCGGTGCATGTCATGGGCTCGCATCAAGGCCGCCAGGGGTTCGTCACAACATTTTCAGCGCCTGTGAGATCGAGCGCAGAATGTTTCGAGGCGGACACCTGAGGCGCTCGATCTCACAGGCGCAGAATGTCTTGAGGTGGACACCTGGCGGCGCTCGATCTCACAGGCGCTGAACTCCTCAAGGCATGCACGCTGCGGCTCGa                                                                                            <  1:737146/236‑1 (MQ=255)                                                                                                                                                    ccGGGGGCGACGGCGCCCTGAGATCTGGTCGGTGCATGTCATGGGCTCGCATCAAGGCCGCCAGGGGTTCGTCACAACATTTTCAGCGCCTGTGAGATCGAGCGCAGAATGTTTCGAGGCGGACACCTGAGGCGCTCGATCTCACAGGCGCAGAATGTCTTGAGGTGGACACCTGGCGGCGCTCGATCTCACAGGCGCTGAACTCCTCAAGGCATGCACGCTGCGGCTCGACGcc                                                                                        <  1:271746/235‑1 (MQ=255)                                                                                                                                                      gggggCGAAGGCGCCCTGAGATCTGGTCGGTGCATGTCATGGGCTCGCATCAAGGCCGCCAGGGGTTCGTCACAACATTTTCAGCGCCTGTGAGATCGAGCGCAGAATGTTTCGAGGCGGACACCTGAGGCGCTCGATCTCACAGGCGCAGAATGTCTTGAGGGGGa                                                                                                                                                          >  1:413997/1‑167 (MQ=255)                                                                                                                                                        gggCGAAGGCGCCCTGAGATCTGGTCGGTGCATGTCATGGGCTCGCATCAAGGCCGCCAGGGGTTCGTCACAACATTTTCAGCGCCTGTGAGATCGAGCGCAGAATGTTTCGAGGCGGACACCTGAGGCGCTCGATCTCACAGGCGCAGAATGTCTTGAGGTGGACACCTGGCGGCGCTCGATCTCACAGGCGCTGAACTCCTCAAGGCATGCACGCTGCGGCTCGACGCCCCTcc                                                                                   <  1:485784/236‑1 (MQ=255)                                                                                                                                                          gCGAAGGCGCCCTGAGATCTGGTCGGTGCATGTCATGGGCTCGCATCAAGGCCGCCAGGGGTTCGTCACAACATTTTCAGCGCCTGTGAGATCGAGCGCAGAATGTTTCGAGGCGGACACCTAAGGCGCTCGATCTCACAGGCGCAGAATGTCTTGAGGTGGACACCTGGCGGCGCTCGATCTCACAGGCGCTGAACTCCTCAAGGCATGCACGCTGCGGCTCg                                                                                             <  1:490778/224‑1 (MQ=255)                                                                                                                                                                gcgcCCTGAGATCTGGTCGGTGCATGTCATGGGCTCGCATCAAGGCCGCCAGGGGTTCGTCACAACATTTTCAGCGCCTGTGAGATCGAGCGCAGAATGTTTCGAg                                                                                                                                                                                                             >  2:391155/1‑106 (MQ=255)                                                                                                                                                                gcgcCCTGAGATCTGGTCGGTGCATGTCATGGGCTCGCATCAAGGCCGCCAGGGGTTCGTCACAACATTTTCAGCGCCTGTGAGATCGAGCGCAGAATGTTTCGAg                                                                                                                                                                                                             <  1:391158/106‑1 (MQ=255)                                                                                                                                                                gcgcCCTGAGATCTGGTCGGTGCATGTCATGGGCTCGCATCAAGGCCGCCAGGGGTTCGTCACAACATTTTCAGCGCCTGTGAGATCGAGCGCAGAATGTTTCGAGGCGGACACCTGAGGCGCTCGATCTCACAGgcgc                                                                                                                                                                            >  1:19166/1‑139 (MQ=255)                                                                                                                                                                gcgcCCTGAGATCTGGTCGGTGCATGTCATGGGCTCGCATCAAGGCCGCCAGGGGTTCGTCACAACATTTTCAGCGCCTGTGAGATCGAGCGCAGAATGTTTCGAGGCGGACACCTGAGGCGCTCGATCTCACAGGCGCAGAATGTCTTGAGGTGGACACCTGGCGGCGCTCGATCTCACAGGCGCTGAACTCCTCAAGGCATGCACGc                                                                                                      >  1:793046/1‑209 (MQ=255)                                                                                                                                                                gcgcCCTGAGATCTGGTCGGTGCATGTCATGGGCTCGCATCAAGGCCGCCAGGGGTTCGTCACAACATTTTCAGCGCCTGTGAGATCGAGCGCAGAATGTTTCGAGGCGGACACCTGAGGCGCTCGATCTCACAGGCGCAGAATGTCTTGAGGTGGACACCTGGCGGCGCTCGATCTCACAGGCGCTGAACTCCTCAAGGCATGCACGCTGCGGCTCGACGCCCCTCCAAGGTCCt                                                                           >  1:403432/1‑236 (MQ=255)                                                                                                                                                                                  ggTGCATGTCATGGGCTCGCATCAAGGCCGCCAGGGGTTCGTCACAACATTTTCAGCGCCTGTGAGATCGAGCGCAGAATGTTTCGAGGCGGACACCTGAGGCGCTCGATCTCACAGGTGCAGAATGTCTTGAGGTGGACACCTGGCGGCGCTCGATCTCACAGGCGCTGAACTCCTCAAGGCATGCACGCTGCGGCTCGACGCCCCt                                                                                     <  2:243310/208‑1 (MQ=255)                                                                                                                                                                                  ggTGCATGTCATGGGCTCGCATCAAGGCCGCCAGGGGTTCGTCACAACATTTTCAGCGCCTGTGAGATCGAGCGCAGAATGTTTCGAGGCGGACACCTGAGGCGCTCGATCTCACAGGCGCAGAATGTCTTGAGGTGGACACCTGGCGGCGCTCGATCTCACAGGCGCTGAACTCCTCAAGGCATGCACGCTGCGGCTCGACGc                                                                                         >  2:522440/1‑204 (MQ=255)                                                                                                                                                                                    tGCAGGTCATGGGCTCGCATCAAGGCCGCCAGGGGTTCGTCACAACATTTTCAGCGCCTGTGAGATCGAGCGCAGAATGTTTCGAGGCGGACACCTGAGGCGCTCGATCTCACAGGCGCAGAATGTCTTGAGGTGGACACCTGGCGGCGCTCGATCTCACAGGCGCTGAACTCCTCAAGGCATGCACGCTGCGGCTCGACGCCCCTcc                                                                                   <  2:406685/208‑1 (MQ=255)                                                                                                                                                                                     gCATGTCATGGGCTCGCATCAAGGCCGCCAGGGGTTCGTCACAACATTTTCAGCGCCTGTGAGATCGAGCGCAGAATGTTTCGAGGCGGACACCTGAGGCGCTCGATCTCACAGGCGCAGAATGTCTTGAGGTGGACACCTGGCGGCGCTCGATCCCACAGGCGCTGAACTCCTCAAGGCATGCACGCTGCGGCTCGACGCCCCTcc                                                                                   <  2:609042/207‑1 (MQ=255)                                                                                                                                                                                         agcgcctgtgagatcgagcgccgccaggtgtccacctcaagacattctGCGCCTGTGAGATCGAGCGCAGAATGTTTCGAGGCGGACACCTGAGGCGCTCGATCTCACAGGCGCAGAATGTCTTGAGGTGGACACCTGGCGgcgc                                                                                                                                             <  2:1029933‑M1/97‑1 (MQ=255)                                                                                                                                                                                          gcgcctgtgagatcgagcgccgccaggtgtccacctcaagacattctGCGCCTGTGAGATCGAGCGCAGAATGTTTCGAGGCGGACACCTGAGGCGCTCGATCTCACAGGCGCAGAATGTCTTGAGGTGGACACCTGGCGGCGCTCGATCTCACAGGCGCTGAACTCCTCAAGGCATGCACGCTGCGGCTCGACGCCCCTCCAAGGTCCTCTGGCCACATCCCt                                                             <  2:546659‑M1/177‑1 (MQ=255)                                                                                                                                                                                                 cTCGCATCAAGGCCGCCAGGGGTTCGTCACAACATTTTCAGCGCCTGTGAGATCGAGCGCAGAATGTTTCGAGGCGGACACCTGAGGCGCTCGATCTCACAGGCGCAGAATGTCTTGAGGTGGACACCTGGCGGCGCTCGATCTCCCAGGCGCTGAACTCCTCAAGGCATGCACGCTGCGGCTCGACGCCCCTCCAAGGTCCTCATGCcac                                                                   >  1:7542/1‑211 (MQ=255)                                                                                                                                                                                                 cTCGCATCAAGGCCGCCAGGGGTTCGTCACAACATTTTCAGCGCCTGTGAGATCGAGCGCAGAATGTTTCGAGGCGGACACCTGAGGCGCTCGATCTCACAGGCGCAGAATGTCTTGAGGTGGACACCTGGCGGCGCTCGATCTCACAGGCGCTGAACTCCTCAAGGCATGCACGCTGCGGCTCGACGCCCCTCCAAGGTCCTCATGCCACATCCCTCAACCTACCGCCCGTCGcc                                          >  1:1071545/1‑236 (MQ=255)                                                                                                                                                                                                 cTCGCATCAAGGCCGCCAGGGGTTCGTCACAACATTTTCAGCGCCTGTGAGATCGAGCGCAGAATGTTTCGAGGCGGACACCTGAGGCGCTCGATCTCACAGGCGCAGAATGTCTTGAGGTGGACACCTGGCGGCGCTCGATCTCACAGGCGCTGAACTCCTCAAGGCATGCACGCTGCGGCTCGACGCCCCTCCAAGGTCCTCATGCCACATCCCTCAACCTACCGCCCGTCGcc                                          >  1:389232/1‑236 (MQ=255)                                                                                                                                                                                                 cTCGCATCAAGGCCGCCAGGGGTTCGTCACAACATTTTCAGCGCCTGTGAGATCGAGCGCAGAATGTTTCGAGGCGGACACCTGAGGCGCTCGATCTCACAGGCGCAGAATGTCTTGAGGTGGACACCTGGCGGCGCTCGACCTCACAGGCGCTGAACTCCTCAAGGCATGCACGCTGCGGCTCGACGCCCCTCCAAgggc                                                                             >  1:477520/1‑199 (MQ=255)                                                                                                                                                                                                   cGCATCAAGGCCGCCAGGGGTTCGTCACAACATTTTCAGCGCCTGTGAGATCGAGCGCAGAATGTTTCGAGGCGGACACCTGAGGCGCTCGATCTCACAGGCGCAGAATGTCTTGAGGTGGACACCTGGCGGCGCTCGATCTCACAGGCGCTGAACTCCTCAAGGCATGCACGCTGCGGCTCGACGCCCCTCCAAGGTCCTCATGCCACATCCCTCAACCTACCGCCCGTcccc                                          >  2:635057/1‑234 (MQ=255)                                                                                                                                                                                                      aTCAAGGCCGCCAGGGGTTCGTCACAACATTTTCAGCGCCTGTGAGATCGAGCGCAGAATGTTTCGAGGCGGACACCTGAGGCGCTCGATCTCACAGGCGCAGAATGTCTTGAGGTGGACACCTGGCGGCGCTCGATCTCACAGGCGCTGAACTCCTCAAGGCATGCACGCTGCGGCTCGACGCCCCTCCAAGGTCCTCATGCCACATCCCTCAACCTACCGccc                                                >  1:704215/1‑225 (MQ=255)                                                                                                                                                                                                       tCAAGGCCGCCAGGGGTTCGTCACAACATTTTCAGCGCCTGTGAGATCGAGCGCAGAATGTTTCGAGGCGGACACCTGAGGCGCTCGATCTCACAGGCGCAGAATGTCTTGAGGTGGACACCTGGCGGCGCTCGATCTCACAGGCGCTGAACTCCTCAAGGCATGCACGCTGCGGCTCGACGCCCCTCCAAGGTCCTCATGCCCCATCCCTCAACCTACCGCCCGTCGCCCCTa                                      >  2:926034/1‑234 (MQ=255)                                                                                                                                                                                                            gccgccAGGGGTTCGTCACAACATTTTCAGCGCCTGTGAGATCGAGCGCAGAATGTTTCGAGGCGGACACCTGAGGCGCTCGATCTCACAGGCGCAGAATGTc                                                                                                                                                                    <  1:374115/103‑1 (MQ=255)                                                                                                                                                                                                             ccgccAGGGGTTCGTCACAACATTTTCAGCGCCTGTGAGATCGAGCGCAGAATGTTTCGAGGCGGACACCTg                                                                                                                                                                                                  >  2:84276/1‑72 (MQ=255)                                                                                                                                                                                                                  aGGGGTTCGTCACAACATTTTCAGCGCCTGTGAGATCGAGCGCAGAATGTTTCGAGGCGGACACCTGAGGCGCTCGATCTCACAGGCGCAGAATGTCTTGAGGTGGACACCTGGCGGCGCTCGATCTCACAGGCGCTGAACTCCTCAAGGCATGCACGCTGCGGCTCGACGCCCCTCCCAGGACCt                                                                           >  2:184011/1‑186 (MQ=255)                                                                                                                                                                                                                   ggggTTCGTCACAACATTTTCAGCGCCTGTGAGATCGAGCGCAGAATGTTTCGAGGCGGACACCTGAGGCGCTCGATCTCACAGGCGCAGAATGTCTTGAGGTGGACACCTGGCGGCGCTCGATCTCACAGGCGCTGAACTCCTCAAGGCATGCACGCTGCGGCTCGACGCCCCTCCAAGGTCCTCATGCCACATCCCTCAACCTACCGCCCGTCGCCCCTACGAAAGTTCCTGt                         >  1:834178/1‑235 (MQ=255)                                                                                                                                                                                                                   ggggTTCGTCACAACATTTTCAGCGCCTGTGAGATCGAGCGCAGAATGTTTCGAGGCGGACACCTGAGGCGCTCGATCTCACAGGCGCAGAATGTCTTGAGGTGGACACCTGGCGGCGCTCGATCTCACAGGCGCTGAACTCCTCAAGGCATGCACGCTGCGGCTCGACGCCCCTCCAAGGTCCTCATGCCACATCCCTCAACCTACCGCCCGTCGCCCCTACGAAAGTTCCTGTc                        >  1:416261/1‑236 (MQ=255)                                                                                                                                                                                                                    gggTTCGTCACAACATTTTCAGCGCCTGTGAGATCGAGCGCAGAATGTTTCGAGGCGGACACCTGAGGCGCTCGATCTCACAGGCGCAGAATGTCTTGAGGTGGACACCTGGCGGCGCTCGATCTCACAGGCGCTGAACTCCTCAAGGCATGCACGCTGCGGCTCGACGCCCCTCCAAGGTCCTCATGCCACATCCCTCAACCTACCGCCCGTCGCCCCTACGAAAGTTCCTGTc                        <  1:856146/235‑1 (MQ=255)                                                                                                                                                                                                                              caagacattctGCGCCTGTGAGATCGAGCGCAGAATGTTTCGAGGCGGACACCTGAGGCGCTCGATCTCACAGGCGCAGAATGCCTTGAGGTGGACACCTGGCGGCGCTc                                                                                                                                           <  1:164592‑M1/99‑1 (MQ=255)                                                                                                                                                                                                                                  aTTTTCAGCGCCTGTGAGATCGAGCGCAGAATGTTTCGAGGCGGACACCTGAGGCGCTCGATCTCACAGGCGCAGAATGTCTTGAGGTGGACACCTGGCGGCGCTCGATCTCACAGGCGCTGAACTCCTCAAGGCATGCACGCTGCGGCTCGACGcc                                                                                        <  2:876369/157‑1 (MQ=255)                                                                                                                                                                                                                                    attctGCGCCTGTGAGATCGAGCGCAGAATGTTTCGAGGCGGACACCTGAGGCGCTCGATCTCACAGGCGCAGAATGTCTTGAGGTGGACACCTGGCGGCGCTCGATCTCACAGGCGCTGAACTCCTCAAGGCATGCACGCTGCgg                                                                                                 <  2:177175‑M1/141‑1 (MQ=255)                                                                                                                                                                                                                                    atgcAGCGCCTGTGAGATCGAGCGCAGAATGTTTCGAGGCGGACACCTGAGGCGCTCGATCTCACAGGCGCAGAATGTCTTGAGGTGGACACCTGGCGGCGCTCGATCTCACAGGCGCTGAACTCCTCAAGGCATGCACGCTGCGGCTCGACGCCCCTCCAAGGTCCTCATg                                                                       <  2:7542/169‑1 (MQ=255)                                                                                                                                                                                                                                         GCGCCTGTGAGATCGAGCGCAGAATGTTTCGAGGCGGACACCTGAGGCGCTCGATCTCACAGGCGCAGAATGACTTGAGGTGGACACCTGGCGGCGCTCGATCTCACAGGCGCTGAACTCCTCAAGGCATGCACGCTGCGGCTCGACGCCCCTCCAAGGTCCTCATGCCACATCCCTCAACCTACCGCCCGTCGCCCCTACGAAAGTTCCTGTCGCTTTGTCGTCAGAAGCTGTCg  <  1:1023107‑M1/236‑1 (MQ=255)                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                            TATCCGCTCGCGAAGAACAACAGTGCGTCGAATCGGGCGCGTAATCGGCGGGTGAATATCGAGCTGGATCGGGTGGCGGTGGTTGAGAAACCGGTGGAAAAGCCGGTTGAGCAAGCGGCGCCGGGTGTTGCACCTGCCTCGGGCGTCCCGGGGGCGAAGGCGCCCTGAGATCTGGTCGGTGCATGTCATGGGCTCGCATCAAGGCCGCCAGGGGTTCGTCACAACATTTTCAGCGCCTGTGAGATCGAGCGCAGAATGTTTCGAGGCGGACACCTGAGGCGCTCGATCTCACAGGCGCAGAATGTCTTGAGGTGGACACCTGGCGGCGCTCGATCTCACAGGCGCTGAACTCCTCAAGGCATGCACGCTGCGGCTCGACGCCCCTCCAAGGTCCTCATGCCACATCCCTCAACCTACCGCCCGTCGCCCCTACGAAAGTTCCTGTCGCTTTGTCGTCAGAAGCTGTCG  >  AE015451/1246432‑1246899

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.