New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	1569240 =	55 (0.950)	3 (0.050)	3/328	NT	5.5%	coding (51/1203 nt)	pcaF‑I	beta‑ketoadipyl‑CoA thiolase
	?	AE015451	1569284 =	51 (0.920)					coding (95/1203 nt)	pcaF‑I	beta‑ketoadipyl‑CoA thiolase

ACGTTGCGGTTGTCTTCACCGGCCTGGTTGGCGCAGCCGAAGAACACTTCGTCTACCTGGTCCCACTGCACGCCAGGGTTGCGCTCGATCAGCGCCTTCAGCGGCACGGCGGCCAGGTCGTCGGCCCGCACGCTGGCCAGGGCGCCGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/1569389‑1569240 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgccgTGCCGCTGAAGGCGCTGATCGAGCGCAACCCTGGCGTGCAGTGGGACCAGGTAGACGAAGTGTTCTTCGGCTGCGCCAACCAGGCCGGTGAAGACAACCGCAACGTGGCCCGCATGGCACTGCTGCTGGCCGGCCTGCCGGAAAGCATCCCGGGCGTCACCCTGAACCGTCTGTGCGCGTCGGGCATGGATGCCGTCGGCACCGCGTTCCGCGCCATCGCCAGCGGC  >  AE015451/1569284‑1569510                                                                                                                                                                                                                                                                                                                                                                                           ACGTTGCGGTTGTCTTCACCGGCCTGGTTGGCGCAGCCGAAGAACACTTCGTCTACCTGGTCCCACTGCACGCCAGGGTTGCGCTCGATCAGCGCCTTCAGCGGCACGGCGGCCAGGTCGTCGGCCCGCACGCTGGCCAGGGCGC                                                                                                                                                                                                                                          >  2:533415/1‑145    TTGCGGTTGTCTTCACCGGCCTGGTTGGCGCAGCCGAAGAACACTTCGTCTACCTGGTCCCACTGCACGCCAGGGTTGCGCTCGATCAGCGCCTTCAGCGGCACGGCGGCCAGGTCGTCGGCCCGCACGCTGGCCAGGGCGCCGCCGTGCCGCTGAAGGCGCTGATCGAGCGCAACCCTGGCGTG                                                                                                                                                                                               <  2:521761/185‑1                                   AGCCGACGAACACTTCGTCTACCTGGTCCCACTGCACGCCAGGGTTGCGCTCGATCAGCGCCTTCAGCGGCACGGCGGCCAGGTCGTCGGCCCGCACGCTGGCCAGGGCGCCGCCGTGCCGCTGAAGGCGCTGATCGAGCG                                                                                                                                                                                                            <  2:846605/141‑1                                                                                                                           GGCCCGCACGCTGGCCAGGGCGCCGCCGTGCCGCTGAAGGCGCTGATCGAGCGCAACCCTGGCGT                                                                                                                                                                                                <  1:355819/65‑1                                                                                                                                               ccCCGCCGTGCGTCTGAAGGCGCTGATCGAGCGCAACCCTGGCGTGCAGTGGGACCATGTAGACGAAGTGTTCTTCGGCTGCGCCAACCAGGCCGGTGAAGACAACCGCAACGTGGCCCGCATGGCACTGCTGCTGGCCGGCCTGCCGGAAAGCACCCCGGGCGTCACCCTGAACCGTCTGTGCG                                                    <  2:661367/183‑1                                                                                                                                                 CCGCCGTGCCGCTGAAGGCGCTGATCGAGCGCAACCCTGGCGTGCAGTGGGACCAGGTAGACGAAGTGTTCTTCGGCTGCGCCAACCAGGCCGGTGAAGACAACCGCAACGTGGCCCGCATGGCACTGCTGCTGGCCGGCCTGCCGGAAAGCATCCCGGGCGTCACCCTGAACCGTCTGTGCGCGTCGGGCATGGATGCCGTCGGCACCGCGTTCCGCGCCATCGCCAGCGGC  >  2:852049/1‑233                                                                                                                                                                                                                                                                                                                                                                                           ACGTTGCGGTTGTCTTCACCGGCCTGGTTGGCGCAGCCGAAGAACACTTCGTCTACCTGGTCCCACTGCACGCCAGGGTTGCGCTCGATCAGCGCCTTCAGCGGCACGGCGGCCAGGTCGTCGGCCCGCACGCTGGCCAGGGCGCCGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/1569389‑1569240 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgccgTGCCGCTGAAGGCGCTGATCGAGCGCAACCCTGGCGTGCAGTGGGACCAGGTAGACGAAGTGTTCTTCGGCTGCGCCAACCAGGCCGGTGAAGACAACCGCAACGTGGCCCGCATGGCACTGCTGCTGGCCGGCCTGCCGGAAAGCATCCCGGGCGTCACCCTGAACCGTCTGTGCGCGTCGGGCATGGATGCCGTCGGCACCGCGTTCCGCGCCATCGCCAGCGGC  >  AE015451/1569284‑1569510

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.