New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	1569240 =	55 (0.950)	3 (0.050)	3/328	NT	5.5%	coding (51/1203 nt)	pcaF‑I	beta‑ketoadipyl‑CoA thiolase
	?	AE015451	1569284 =	51 (0.920)					coding (95/1203 nt)	pcaF‑I	beta‑ketoadipyl‑CoA thiolase

TACCGAAGCACCCTGACCAGGAGCCTCCAAATGCCACGCGCAGACCATTTCCGAACCCACCCAAATCGAGCTGTCCGCCATGCGTGACCTCGACGCCCGTACCGCCGCTGACCATGGCCAGCTGGCAGGAGAAGCCTGATGCACGACGTATTCATCTGTGACGCCATCCGTACCCCGATCGGCCGCTTCGGCGGCGCCCTGGCCAGCGTGCGGGCCGACGACCTGGCCGCCGTGCCGCTGAAGGCGCTGATCGAGCGCAACCCTGGCGTGCAGTGGGACCAGGTAGACGAAGTGTTCTTCGGCTGCGCCAACCAGGCCGGTGAAGACAACCGCAACGTGGCCCGCATGGCACTGCTGCTGGCCGGCCTGCCGGAAAGCATCCCGGGCGTCACCCTGAACCGTCTGTGCGCGTCGGGCATGGATGCCGTCGGCACCGCGTTCCGCGCCATCGCCAGCGGCGAGATGGA  >  AE015451/1569052‑1569518                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                           tACCGAAGCACCCTGACCAGGAGCCTCCAAATGCCACGCGCAGACCATTTCCGAACCCACCCAAATCGAGCTGTCCGCCATGCGTGACCTCGACGCCCGTACCGCCGCTGACCATGGCCAGCTGGCAGGAGAAGCCTGATGCACGACGTATTCATCTGTGACGCCATCCGTACCCCGATCGGCCGCTTCGGCGGCGCCCTGGCCAGCGTGCGGGCCGACGACCTGGCCGCCGTGc                                                                                                                                                                                                                                          >  1:658051/1‑235 (MQ=255)     gAAGCACCCTGACCAGGAGCCTCCAAATGCCACGCGCAGACCATTTCCGAACCCACCCAAATCGAGCTGTCCGCCATGCGTGACCTCGACGCCCGTACCGCCGCTGACCATGGCCAGCTGGCAGGAGAAGCCTGATGCACGACGTATTCATCTGTGACGCCATCCGTACCCCGATCGGCCGCTTCGGCGGCGCCCTGGCCAGCGTGCGGGCCGACGACCTGGCCGCCGTGCCg                                                                                                                                                                                                                                        >  2:651128/1‑233 (MQ=255)     gAAGCACCCTGACCAGGAGCCTCCAAATGCCACGCGCAGACCATTTCCGAACCCACCCAAATCGAGCTGTCCGCCATGCGTGACCTCGACGCCCGTACCGCCGCTGACCATGGCCAGCTGGCAGGAGAAGCCTGATGCACGACGTATTCATCTGTGACGCCATCCGTACCCCGATCGGCCGCTTCGGCGGCGCCCTGGCCAGCGTGCGGGCCGACGACCTGGCCGCCGTGCCGCt                                                                                                                                                                                                                                      >  1:796395/1‑235 (MQ=255)                             aaaTGCCACGCGCAGACCATTTCCGAACCCACCCAAATCGAGCTGTCCGCCATGCGTGACCTCGACGCCCGTACCGCCGCTGACCATGGCCAGCTGGCAGGAGAAGCCTGATGCACGACGTATTCATCTGTGACGCCATCCGTACCCCGATCGGCCGCTTCGGCGGCGCCCTGGCCAGCGTGCGGGCCGACGACCTGGCCGCCGTGCCGCTGAAGGCGCTGATCGAGCGCAAc                                                                                                                                                                                                                >  1:838442/1‑233 (MQ=255)                                tGCCACGCGCAGACCCTTTCCGAACCCACCCAAATCGAGCTGTCCGCCATGCGTGACCTCGACGCCCGTACCGCCGCTGACCATGGCCAGCTGGCAGGAGAAGCCTGATGCACGACGTATTCATCTGTGACGCCATCCGTACCCCGATCGGCCGCTTCGGCGGCGCCCTGGCCAGCGTGCGGGCCGACGACCTGGCCGCCGTGCCGCTGAAGGCGCTGATCGAGCGCAACCCTg                                                                                                                                                                                                            <  2:433255/234‑1 (MQ=255)                                          aGACCATTTCCGAACCCACCCAAATCGAGCTGTCCGCCATGCGTGACCTCGACGCCCGTACCGCCGCTGACCATGGCCAGCTGGCAGGAGAAGCCTGATGCACGACGTATTCATCTGTGACGCCATCCGTACCCCGATCGGCCGCTTCGGCGGCGCCCTGGCCAGCGTGCGGGCCGACGACCTGGCCGCCGTGCCGCTGAAGGCGCTGATCGAGCGCAACCCTGGc                                                                                                                                                                                                          >  1:333677/1‑226 (MQ=255)                                              cATTTCCGAACCCACCCAAATCGAGCTGTCCGCCATGCGTGACCTCGACGCCCGTACCGCCGCTGACCATGGCCAGCTGGCAGGAGAAGCCTGATGCACGACGTATTCATCTGTGACGCCATCCGTACCCCGATCGGCCGCTTCGGCGGCGCCCTGGCCAGCGTGCGGGCCGACGACCTGGCCGCCGTGCCGCTGAAGGCGCTGATCGa                                                                                                                                                                                                                       <  2:634928/209‑1 (MQ=255)                                                              caAATCGAGCTGTCCGCCATGCGTGACCTCGACGCCCGTACCGCCGCTGACCATGGCCAGCTGGCAGGAGAAGCCTGATGCACGACGTATTCATCTGTGACGCCATCCGTACCCCGATCGGCCGCTTCGGCGGCGCCCTGGCCAGCGTGCGGGCCGACGACCTGGCCGCCGTGCCGCTGAAGGCGCTGATCGAGCGCAACCCTGGCGTGCAGTGGGACCAGGTAGAc                                                                                                                                                                                     >  1:165439/1‑227 (MQ=255)                                                                     cgCTGTCCGCCAGGCGGGACCTCGACGCCCGTACCGCCGCTGACCATGGCCAGCTGGCAGGAGAAGCCTGATGCCCGACGTATTCATCTGTGACGCCATCCGTACCCCGATCGGCCGCTTCGGCGGCGCCCTGGCCAGCGTGCGGGCCGACGACCTGGCCGCCGTGCCGCTGAAGGCGCTg                                                                                                                                                                                                                            <  1:311965/180‑1 (MQ=255)                                                                       cTGTCCGCCATGCGTGACCTCGACGCCCGTACCGCCGCTGACCATGGCCAGCTGGCAGGAGAAGCCTGATGCACGACGTATTCATCTGTGACGCCATCCGTACCCCGATCGGCCGCTTCGGCGGCGCCCTGGCCAGCGTGCGGGCCGACGACCTGGCCGCCGTGCCGCTGAAGGCGCTGATCGAGCGCAACCCTGGCGTGCAGTGGGACCAGGTAGACGAAGTGTTCTTCGGCTgc                                                                                                                                                                   <  1:651131/236‑1 (MQ=255)                                                                        tGTCCGCCATGCGTGACCTCGACGCCCGTACCGCCGCTGACCATGGCCAGCTGGCAGGAGAAGCCTGATGCACGACGTATTCATCTGTGACGCCATCCGTACCCCGATCGGCCGCTTCGGCGGCGCCCTGGCCAGCGTGCGGGCCGACGACCTGGCCGCCGTGCCGCTGAAGGCGCTGATCGAGCGCAACCCTGGCGTGCAGTGGGACCAGGTAGACGAAGTGTTCTTCGGCt                                                                                                                                                                     <  2:1043800/233‑1 (MQ=255)                                                                                 tccGTGCCCTCGCCGCCCGTACCGCCGCTGCCCATGGCCAGCTGGCAGGAGAAGCCTGATGCACGACGTATTCATCTGTGACGCCATCCGTACCCCGATCGGCCGCTTCGGCGGCGCCCTGGCCAGCGTGCGGGCCGACGACCTGGCCGCCGTGCCGCTGAAGGCGCTGATCGAGCGCAACCCTGGCGTGCAGTGGGACCAGGTAGACGAAGTGTTCTTCGGCTGCGCCaa                                                                                                                                                              <  1:268777/229‑1 (MQ=255)                                                                                      ttgcggttgtcttcaccggcctggttggcgcagccgaagaacacttcgtctacctggtcccactgcacgccagggttgcgctcgatcagcgccttcagcggcacggcggccaggtcgtcggcccgcacgctggccagggcgccgccgTGCCGCTGAAGGCGCTGATCGAGCGCAACCCTGGCGTg                                                                                                                                                                                                       <  2:521761‑M2/38‑1 (MQ=255)                                                                                              cGCCCGTACCGCCGCTGACCATGGCCAGCTGGCAGGAGAAGCCTGATGCACGACGTATTCATCTGTGACGCCATCCGTACCCCGATCGGCCGCTTCGGCGGCGCCCTGGCCAGCGTGCGGGCCGACGACCTGGCCGCCGTGCCGCTGAAGGCGCTGATCGAGCGCAACCCTGGCGTGCAGTgg                                                                                                                                                                                                 <  2:333674/183‑1 (MQ=255)                                                                                              cGCCCGTACCGCCGCTGACCATGGCCAGCTGGCAGGAGAAGCCTGATGCACGACGTATTCATCTGTGACGCCATCCGTACCCCGATCGGCCGCTTCGGCGGCGCCCTGGCCAGCGTGCGGGCCGACGACCTGGCCGCCGTGCCGCTGAAGGCGCTGATCGAGCGCAACCCTGGCGTGCAGTGGGACCAGGTAg                                                                                                                                                                                       <  2:893105/193‑1 (MQ=255)                                                                                               gCCCGTACCGCCGCTGACCATGGCCAGCTGGCAGGAGAAGCCTGATGCACGACGTATTCATCTGTGATGCCATCCGTACCCCGATCGGCCGCTTCGGCTGCGCCCTGGCCAGCGTGCGGGCCGACGACCTGGCCGCCGTGCCGCTGAAGGCGCTGATCGAGCGCAACCCTGGCGTGCAGTGGGACCAGGTAGACGAAgt                                                                                                                                                                                >  1:588329/1‑199 (MQ=255)                                                                                               gCCCGTACCGCCGCTGACCATGGCCAGATGGCAGGAGAAGCCTGATGCACGACGTATTCATCTGTGACGCCATCCGTACCCCGATCGGCCGCTTCGGCGGCGCCCTGGCCAGCGTGCGGGCCGACGACCTGGCCGCCGt                                                                                                                                                                                                                                            <  2:50767/139‑1 (MQ=255)                                                                                                       cgccgcTGACCATGGCCAGCTGGCAGGAGAAGCCTGATGCACGACGTATTCATCTGTGACGCCATCCGTACCCCGATCGGCCGCTTCGGCGGCGCCCTGGCCAGCGTGCGGGCCGACGACCTGGCCGCCGTGCCGCTGAAGGCGCTGATCGAGCGCAACCCTGGCGTGCAGTgg                                                                                                                                                                                                 <  2:247066/174‑1 (MQ=255)                                                                                                       cgccgcTGACCATGGCCAGCTGGCAGGAGAAGCCTGATGCACGACGTATTCATCTGTGACGCCATCCGTACCCCGATCGGCCGCTTCGGCGGCGCCCTGGCCAGCGTGCGGGCCGACGACCTGGCCGCCGTGCCGCTGAAGGCGCTGATCGAGCGCAACCCTGGCGTGCAGTGGGACCAGGTAGACGAAGTGTTCTTCGGCTGCGCCAACCAGGCCGGTGAAGACAACCGCAACGt                                                                                                                                   <  1:317246/236‑1 (MQ=255)                                                                                                           gcTGGCCATGGCCAGCTGGCAGGAGGAGCCTGATGCGCGACGTATTCAGCTGTGACGCCATCCGTACCCCGATCGGCCGCGTCGGCGGCGCCCTGGCCAGCGTGCGGGCCGACGACCTGGCCGCCGTGCCGCTGAAGGCGCTGATCGAGCGCAACCCTg                                                                                                                                                                                                            <  2:700706/159‑1 (MQ=255)                                                                                                            cTGACCATGGCCAGCTGGCAGGAGAAGCCTGATGCACGACGTATTCATCTGTGACGCCATCCGTACCCCGATCGGCCGCTTCGGCGGCGCCCTGGCCAGCGTGCGGGCCGACGACCTGGCCGCCGTGCCGCTGAAGGCGCTGATCGAGCGCAACCCTGGCGTGCAGTGGGACCAGGTAGACGAAGTGTTCTTCGGCTGCGCCAACCAGGCCGGTGaa                                                                                                                                                 >  2:787956/1‑217 (MQ=255)                                                                                                              gACCATGGCCAGCTGGCAGGAGAAGCCTGATGCACGACGTATTCATCTGTGACGCCATCCGTACCCCGATCGGCCGCTTCGGCGGCGCCCTGGCCAGCGTGCGGGCCGACGACCTGGCCGCCGTGCCGCTGAAGGCGCTGATCGAGCGCAACCCTGGCGTGCAGTGGGACCAGGTAGACGAAGTGTTCTTCGGCTGCGCCAACCAGGCCGGTGAAGACAACCGCAACGTGGCCCg                                                                                                                             >  1:624352/1‑235 (MQ=255)                                                                                                                 cATGGCCAGCTGGCAGGAGAAGCCTGATGCACGACGTATTCATCTGTGACGCCATCCGTACCCCGATCGGCCGCTTCGGCGGCGCCCTGGCCAGCGTGCGGGCCGACGACCTGGCCGCCGTGCCGCTGAAGGCGCTGATCGAGCGCAACCCTGGCGTGCAGTGGGACCAGGTAGACGAAGTGTTCTTCGGCTGCGCCAACCAGGCCGGTGAAGACAACCGCAACGTGGCCCGCATg                                                                                                                         <  1:605719/236‑1 (MQ=255)                                                                                                                     agccgacgaacacttcgtctacctggtcccactgcacgccagggttgcgctcgatcagcgccttcagcggcacggcggccaggtcgtcggcccgcacgctggccagggcgccgccgTGCCGCTGAAGGCGCTGATCGAgcg                                                                                                                                                                                                                    <  2:846605‑M2/25‑1 (MQ=255)                                                                                                                            ggCAGGAGAAGCCTGATGCACGACGTATTCATCTGTGACGCCATCCGTACCCCGATCGGCCGCTTCGGCGGCGCCCTGGCCAGCGTGCGGGCCGACGACCTGGCCGCCGTGCCGCTGAAGGCGCTGATCGAGCGCAACCCTGGCGTg                                                                                                                                                                                                       >  1:1084693/1‑147 (MQ=255)                                                                                                                            ggCAGGAGAAGCCTGATGCACGACGTATTCATCTGTGACGCCATCCGTACCCCGATCGGCCGCTTCGGCGGCGCCCTGGCCAGCGTGCGGGCCGACGACCTGGCCGCCGTGCCGCTGAAGGCGCTGATCGAGCGCAACCCTGGCGTGCAGTGGGACCAGGTAGACGAAGTGTTCTTCGGCTGCGCCAACCAGGCCGGTGAAGACAACCGCAACGTGGCCCGCATGGCActgctgct                                                                                                              >  1:409453/1‑236 (MQ=255)                                                                                                                             gCAGGAGAAGCCTGATGCACGACGTATTCATCTGTGACGCCATCCGTACCCCGATCGGCCGCTTCGGCGGCGCCCTGGCCAGCGTGCGGGCCGACGACCTGGCCGCCGTGCCGCTGAAGGCGCTGATCGAGCGCAAcccc                                                                                                                                                                                                             >  2:166742/1‑139 (MQ=255)                                                                                                                              cAGGAGAAGCCTGATGCACGACGTATTCATCTGTGACGCCATCCGTACCCCGATCGGCCGCTTCGGCGGCGCCCTGGCCAGCGTGCGGGCCGACGACCTGGCCGCCGTGCCGCTGAAGGCGCTGATCGAGCGCAACCCTGGCGTGCCGTGGGACCAg                                                                                                                                                                                           >  1:337718/1‑157 (MQ=255)                                                                                                                                    caGCCTGATGCACGACGTATTCATCTGTGACGCCATCCGTACCCCGATCGGCCGCTTCGGCGGCGCCCTGGCCAGCGTGCGGGCCGACGACCTGGCCGCCGTGCCGCTGAAGGCGCTGATCGAgcg                                                                                                                                                                                                                    <  2:332536/125‑1 (MQ=255)                                                                                                                                               acgacgTATTCATCTGTGACGCCATCCGTACCCCGATCGGCCGCTTCGGCGGCGCCCTGGCCAGCGTGCGGGCCGACGACCTGGCCGCCGTGCCGCTGAAGGCGCTGATCGAGCGCAACCCTGGCGTGCAGTGGGACCAGGTAGACGAAGTGTTCTTCGGCTGCGCCAACCAGGCCGGTGAAGACAACCGCAACGTGGCCCGCATGGCACTGCTGCTGGCCGGCCt                                                                                                     <  2:487244/226‑1 (MQ=255)                                                                                                                                               acgacgTATTCATCTGTGACGCCATCCGTACCCCGATCGGCCGCTTCGGCGGCGCCCTGGCCAGCGTGCGGGCCGACGACCTGGCCGCCGTGCCGCTGAAGGCGCTGATCGAGCGCAACCCTGGCGTGCAGTGGGACCAGGTAGACGAAGTGTTCTTCGGCTGCGCCAACCAGGCCGGTGAAGACAACCGCAACGTGGCCCGCATGGCACTGCTGCTGGCCGGCCTGCCGGAAAg                                                                                            >  1:684760/1‑235 (MQ=255)                                                                                                                                                  acgTATTCATCTGTGACGCCATCCGTACCCCGATCGGCCGCTTCGGCGGCGCCCTGGCCAGCGTGCGGGCCGACGACCTGGCCGCCGTGCCGCTGAAGGCGCTGATCGAGCGCAACCCTGGCGTGCAGTGGGACCAGGTAGACg                                                                                                                                                                                    <  2:767193/144‑1 (MQ=255)                                                                                                                                                      aTTCATCTGTGACGCCATCCGTACCCCGATCGGCCGCTTCGGCGGCGCCCTGGCCAGCGTGCGGGCCGACGACCTGGCCGCCGTGCCGCTGAAGGCGCTGATCGAGCGCAACCCTGGCGTGCAGTGGGACCAGGTAGACGAAGTGTTCTTCGGCTGCGCCAACCAGGCCGGTGAAGACAACCGCAACGTGGCCCGCATGGCACTGCTGCTGGCCGGCCTGCCGGAAAGCATCCCgg                                                                                    <  1:787959/236‑1 (MQ=255)                                                                                                                                                       cacgccagggttgcgctcgatcagcgccttcagcggcaCGGCGGCGCCCTGGCCAGCGTGCGGGCCGACGACCTGGCCGCCGTGCCGCTGAAGGCGCTGATCGAGCGCAACCCTGGCGTGCAGTGGGACCAGGTAGACGAAGTGTTCTTCGGCTGCGCCAACCAGGCCGGTGAAGACAACCGCaa                                                                                                                                      <  2:521761‑M1/147‑1 (MQ=255)                                                                                                                                                         cATCTGTGACGCCATCCGTACCCCGATCGGCCGCTTCGGCGGCGCCCTGGCCAGCGTGCGGGCCGACGACCTGGCCGCCGTGCCGCTGAAGGCGCTGATCGAGCGCAACCCTGGCGTGCAGTGGGACCAGGTAGACGAAGTGTTCTTCGGCTGCGCCAACCAGGCCGGTGAAGACAACCGCAACGTGGcc                                                                                                                               >  2:625347/1‑190 (MQ=255)                                                                                                                                                                gACGCCATCCGTACCCCGATCGGCCGCTTCGGCGGCGCCCTGGCCAGCGTTCGGGCCGACGACCTGGCCGCCGTGCCGCTGACGGCGCTGATCGAGCGCAACCCTGGCGTGCAGTGGGACCAgg                                                                                                                                                                                          >  2:342990/1‑124 (MQ=255)                                                                                                                                                                gACGCCATCCGTACCCCGATCGGCCGCTTCGGCGGCGCCCTGGCCAGCGTGCGGGCCGACGACCTGGCCGCCGTGCCGCTGAAGGCGCTGATCGAGCGCAACCCTGGCGTGCAGTGGGACCAGGTAGACGAAGTGTTCTTCGGCTGCGCCAACCAGGCCGGTGAAGACAACCGCa                                                                                                                                       >  2:171622/1‑175 (MQ=255)                                                                                                                                                                gACGCCATCCGTACCCCGATCGGCCGCTTCGGCGGCGCCCTGGCCAGCGTGCGGGCCGACGACCTGGCCGCCGTGCCGCTGAAGGCGCTGATCGAGCGCAACCCTGGCGTGCAGTGGGACCAGGTAGACGAAGTGTTCTTCGGCTGCGCCAACCAGGCCGGTGAAGACAACCGCAACGTGGCCCGCa                                                                                                                           >  1:318123/1‑187 (MQ=255)                                                                                                                                                                gACGCCATCCGTACCCCGATCGGCCGCTTCGGCGGCGCCCTGGCCAGCGTGCGGGCCGACGACCTGGCCGCCGTGCCGCTGAAGGCGCTGATCGAGCGCAACCCTGGCGTGCAGTGGGACCAGGTAGACGAAGTGTTCTTCGGCTGCGCCAACCAGGCCGGTGAAGACAACCGCAACGTGGCCCGCATGGCACTGCTGCTGGCCGGCCTGCCGGAAAGCGTCCCGGGCGTCAccc                                                                           >  1:609220/1‑235 (MQ=255)                                                                                                                                                                gACGCCATCCGTACCCCGATCGGCCGCTTCGGCGGCGCCCTGGCCAGCGTGCGGGCCGACGACCTGGCCGCCGTGCCGCTGAAGGCGCTGATCGAGCGCAACCCTGGCGTGCAGTGGGACCAGGTAGACGAAGTGTTCTTCGGCTGCGCCAACCAGGCCGGTGAAGACAACCGCAACGTGGCCCGCATGGCACTGCTGCTGGCCGGCCTGCCGGAAAGCATCCCGGGCGTCAccc                                                                           >  1:725805/1‑235 (MQ=255)                                                                                                                                                                 aCGCCATCCGGGCCCCGATCGGCCGCTTCGGCGGCGCCCTGGCCAGCGTGCGGGCCGACGACCTGGCCGCCGTGCCGCTGAAGGCGCTGATCGAGCGCAACCCTGGCGTGCAGTGGGACCAGGTAGACGAAGTGTTCTTCGGCTGCGCCAACCAgg                                                                                                                                                         <  2:350894/156‑1 (MQ=255)                                                                                                                                                                  cGCCATCCGTACCCCGATCGGCCGCTTCGGCGGCGCCCTGGCCAGCGTGCGGGCCGACGACCTGGCCGCCGTGCCGCTGAAGGCGCTGATCGAGCGCAACCCTGGCGTGCAGTGGGACCAGGTAGACGAAGTGTTCTTCGGCTGCGCCAACCAGGCCGGTGAAGACAACCGCAACGTGGCCCGCATGGCACTGCTGCTGGCCGGCCTGCCGGAAAGCATCCCGGGCGTCACCCTGa                                                                        >  1:609708/1‑236 (MQ=255)                                                                                                                                                                    cgctcgatcagcgccttcagcggcaCGGCGGCGCCCTGGCCAGCGTGCGGGCCGACGACCTGGCCGCCGTGCCGCTGAAGGCGCTGATCGAGCGCAACCCTGGCGTGCAGTGGGACCAGGTAGACGAAGTGTTCGTCGGCt                                                                                                                                                                     <  2:846605‑M1/116‑1 (MQ=255)                                                                                                                                                                    ccATCCGTACCCCGATCGGCCGCTTCGGCGGCGCCCTGGCCAGCGTTCGGGCCGACGACCTGGCCGCCGTGCCGCTGCAGGCGCTGATCGAGCGCAACCCTGGCGTGCAGTGGGACCAGGTAGCCGCAGTGTTCTCCgg                                                                                                                                                                       >  2:89551/1‑139 (MQ=255)                                                                                                                                                                         cGTACCCCGATCGGCCGCTTCGGCGGCGCCCTGGCCAGCGTGCGGGCCGACGACCTGGCCGCCGTGCCGCTGAAGGCGCTGATCGAGCGCAACCCTgg                                                                                                                                                                                                           >  1:239295/1‑98 (MQ=255)                                                                                                                                                                         cGTACCCCGATCGGCCGCTTCGGCGGCGCCCTGGCCAGCGTGCGGGCCGACGACCTGGCCGCCGTGCCGCTGAAGGCGCTGATCGAGCGCAACCCTgg                                                                                                                                                                                                           <  2:239292/98‑1 (MQ=255)                                                                                                                                                                                   gcGGCCGCTTCGGCGGCGCCCTGGCCGGCGTGCGGGCCGACGACCTGGCCGCCGTGCCGCTGAAGGTGCTGATCGAGCGCAACCCTGGCGTGCAGTGGGACCAGGTAGACGAAGTGTTCTTCGGCTGCGCCAAcc                                                                                                                                                            <  1:174706/134‑1 (MQ=255)                                                                                                                                                                                    cGGCCGCTTCGGCGGCGCCCTGGCCAGCGTGCGGGCCGACGACCTGGCCGCCGTGCCGCTGAAGGCGCTGATCGAGCGCAACCCTGGCGTGCAGTGGGACCAGGTAGACGAAGTGTTCTTCGGCTGCGCCAACCAGGCCGGTGAAGACAACCGCAACGTGGCCCGCAt                                                                                                                          >  1:307595/1‑168 (MQ=255)                                                                                                                                                                                     ggCCGCTTCGGCGGCGCCCTGGCCAGCGTGCGGGCCGACGACCTGGCCGCCGTGCCGCTGAAGGCGCTGATCGAGCGCAACCCTGGCGTGCAGTGGGACCAGGTAGACGAAGTGTTCTTCGGCTGCGCCAACCAGGCCGGTGAAGACAACCGCAACGTGGCCCGCATGGCACTGCTGCTGGCCGGCCTGCCGGAAAGc                                                                                           >  1:1065021/1‑198 (MQ=255)                                                                                                                                                                                     ggCCGCTTCGGCGGCGCCCTGGCCAGCGTGCGGGCCGACGACCTGGCCGCCGTGCCGCTGAAGGCGCTGATCGAGCGCAACCCTGGCGTGCAGTGGGACCAGGTAGACGAAGTGTTCTTCGGCTGCGCCAACCAGGCCGGTGAAGACAACCGCAACGTGGCCCGCATGGCACTGCTGCTGGCCGGCCTGCCGGAAAGCATCCCGGGCGTCACCCTGAACCGTCTGTgc                                                             <  1:850956/228‑1 (MQ=255)                                                                                                                                                                                     ggCCGCTTCGGCGGCGCCCTGGCCAGCGTGCGGGCCGACGACCTGGCCGCCGTGCCGCTGAAGGCGCTGATCGAGCGCAACCCTGGCGTGCAGTGGGACCAGGTAGACGAAGTGTTCTCCGGCTgcg                                                                                                                                                                  >  1:104590/1‑127 (MQ=255)                                                                                                                                                                                     ggCCGCTTCGGCGGCGCCCTGGCCAGCGTACGGGCCGACGACCTGGCCGCCGTGCCGCTGAAGGCGCTGATCGAGCGCAACCCTGGCGTGCAGTGGGACCAGGTAGACGAAGTGTTCTTCGGCTGCGCCAACCAGGCCGGTGaa                                                                                                                                                 >  1:370442/1‑144 (MQ=255)                                                                                                                                                                                         gCTTCGGCGGCGCCCTGGCCAGCGTGCGGGCCGACGACCTGGCCGCCGTGCCGCTGAAGGCGCTGATCGAGCGCAACCCTGGCGTGCAGTGGGACCAGGTAGACGAAGTGTTCTTCGGCTGCGCCAACCAGGCCGGTGAAGACAACCGCAACGTGGCCCGCATGGCACTGCTGCTGGCCGGCCTGCCGGAAAGCATCCCGGGCGTCACCCTGAACCGTCTGTGCGCGTCGGGCATg                                                 >  1:923690/1‑236 (MQ=255)                                                                                                                                                                                          cTTCGGCGGCGCCCTGGCCAGCGTGCGGGCCGACGACCTGGCCGCCGTGCCGCTGAAGGCGCTGATCGAGCGCAACCCTGGCGTGCAGTGGGACCAGGTAGACGAAGTGTTCTTCGGCTGCGCCAACCAGGCCGGTGAAGACAACCGCAACGt                                                                                                                                   <  1:177382/153‑1 (MQ=255)                                                                                                                                                                                           ttCGGCGGCGCCCTGGCCAGCGTGCGGGCCGACGACCTGGCCGCCGTGCCGCTGAAGGCGCTGATCGAGCGCAACCCTGGCGTGCAGTGGGACCAGGTAGACGAAGTGTTCTTCGGCTGCGCCAACCAGGCCGGTGAAGACAACCGCAACGTGGCCCGCATGGCACTGCTGCTGGCCGGCCTGCCGGAAAGCATCCCGGGCGTCACCCTGAACCGTCTGTGCGCGTCGGGCATg                                                 <  2:684757/234‑1 (MQ=255)                                                                                                                                                                                                  GCGCCCTGGCCAGCGTGCGGGCCGACGACCTGGCCGCCGTGCCGCTGAAGGCGCTGATCGAGCGCAACCCTGGCGTGCAGTGGGACCAGGTAGACGAAGTGTTCTTCGGCTGCGCCAACCAGGCCGGTGAAGACAACCGCAACGt                                                                                                                                   >  2:533415‑M1/1‑145 (MQ=255)                                                                                                                                                                                                     cccTGGCCAGCGTGCGGGCCGCCGACCTGGCCGCCGTGCCGCTGAAGGCGCTGATCGAGCGCAACCCTGGCGTGCAGTGGGACCAGGTAGACGAAGTGTTCTTCGGCTGCGCCAACCAGGCCGGTGAAGACAACCGCAACGTGGCCCGCATGGCACTGCTGCTGGCCGGCCTGCCGGAAAGCATCCCgg                                                                                    <  2:1021709/189‑1 (MQ=255)                                                                                                                                                                                                        tGGCCAGCGTGCGGGCCGACGACCTGGCCGCCGTGCCGCTGAAGGCGCTGATCGAGCGCAACCCTGGCGTGCAGTGGGACCAGGTAGACGAAGTGTTCTTCGGCTGCGCCAACCAGGCCGGTGAAGACAACCGCAACGTGGCCCGCATGGCACTGCTGCTGGCCGGCCTGCCGGAAAGCATCCCGGGCGTCACCCTGAACCGt                                                                   >  1:233273/1‑203 (MQ=255)                                                                                                                                                                                                             ggcccgcacgctggccagggcgccgccgTGCCGCTGAAGGCGCTGATCGAGCGCAACCCTGGCGt                                                                                                                                                                                                        <  1:355819‑M2/37‑1 (MQ=255)                                                                                                                                                                                                                  gCGGGCCGACGACCTGGCCGCCGTGCCGCTGAAGGCGCTGATCGAGCGCAACCCTGGCGTGCAGTGGGACCAGGTAGACGAAGTGTTCTTCGGCTGCGCCAACCAGGCCGGTGAAGACAACCGCAACGTGGCCCGCATGGCACTGCTGCTGGCCGGCCTGCCGGAAAGCATCCCGGGCGTCACCCTGAACCGTCTGTgc                                                             <  2:796392/199‑1 (MQ=255)                                                                                                                                                                                                                                tGGCCGCCGTGCCGCTGAAGGCGCTGATCGGGCGCAACCCTGGCGGGCAGGGGGACCAGGTAGACGAAGGGTTCTTCGGCTGCGCCAACCAGGCCGGGGAAGACAACCGCAACGTGGCCCGCATGGCAct                                                                                                                    >  2:299314/1‑130 (MQ=38)                                                                                                                                                                                                                                 ccccgccgTGCGTCTGAAGGCGCTGATCGAGCGCAACCCTGGCGTGCAGTGGGACCATGTAGACGAAGTGTTCTTCGGCTGCGCCAACCAGGCCGGTGAAGACAACCGCAACGTGGCCCGCATGGCACTGCTGCTGGCCGGCCTGCCGGAAAGCACCCCGGGCGTCACCCTGAACCGTCTGTgcg                                                            <  2:661367‑M2/177‑1 (MQ=255)                                                                                                                                                                                                                                   ccgccgTGCCGCTGAAGGCGCTGATCGAGCGCAACCCTGGCGTGCAGTGGGACCAGGTAGACGAAGTGTTCTTCGGCTGCGCCAACCAGGCCGGTGAAGACAACCGCAACGTGGCCCGCATGGCACTGCTGCTGGCCGGCCTGCCGGAAAGCATCCCGGGCGTCACCCTGAACCGTCTGTGCGCGTCGGGCATGGATGCCGTCGGCACCGCGTTCCGCGCCATCGCCAgcggc          >  2:852049‑M2/7‑233 (MQ=255)                                                                                                                                                                                                                                         tGCCGCTGAAGGCGCTGATCGAGCGCAACCCTGGCGTGCAGTGGGACCAGGTAGACGAAGTGTTCTTCGGCTGCGCCAACCAGGCCGGTGAAGACAACCGCAACGTGGCCCGCATGGCACTGCTGCTGGCCGGCCTGCCGGAAAGCATCCCGGGCGTCACCCTGAACCGTCTGTGCGCGTCGGGCATGGATGCCGTCGGCACCGCGTTCCGCGCCATCGCCAGCGGCGAGATGGa  >  1:835611/1‑235 (MQ=255)                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                           TACCGAAGCACCCTGACCAGGAGCCTCCAAATGCCACGCGCAGACCATTTCCGAACCCACCCAAATCGAGCTGTCCGCCATGCGTGACCTCGACGCCCGTACCGCCGCTGACCATGGCCAGCTGGCAGGAGAAGCCTGATGCACGACGTATTCATCTGTGACGCCATCCGTACCCCGATCGGCCGCTTCGGCGGCGCCCTGGCCAGCGTGCGGGCCGACGACCTGGCCGCCGTGCCGCTGAAGGCGCTGATCGAGCGCAACCCTGGCGTGCAGTGGGACCAGGTAGACGAAGTGTTCTTCGGCTGCGCCAACCAGGCCGGTGAAGACAACCGCAACGTGGCCCGCATGGCACTGCTGCTGGCCGGCCTGCCGGAAAGCATCCCGGGCGTCACCCTGAACCGTCTGTGCGCGTCGGGCATGGATGCCGTCGGCACCGCGTTCCGCGCCATCGCCAGCGGCGAGATGGA  >  AE015451/1569052‑1569518

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.