New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AE015451 = 171447541 (0.710)3 (0.060) 3/322 NT 6.9% coding (319/870 nt) PP_1509 conserved protein of unknown function
?AE015451 = 1714500 42 (0.770)coding (344/870 nt) PP_1509 conserved protein of unknown function

ACGCCAACAGTAACCAAATGCTTGGCTTCTACAGCCAGGTGTTCAACGCCGTCGAAGGCAACACCACTTTCTACGCACGTCCCGCTCCCGGCACCATTGCCCGCTGGGCGCAGCTCATGCCCGAGCACTTTCGCTTCACTGCCAAGTTTCCGCGGGATGTCAGCCATGAAGGCGACCTGCGAGACCAGCTTGAGCCTGCCTTCGACTTCACCCGGCTGATGGCCCCGCTGGGCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/1714239‑1714475
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgggccggcAACTGCAGCCAGTAGGGTGATACGCGCCGGCCCAGCGGGGCCATCAGCCGGGTGAAGTCGAAGGCAGGCTCAAGCTGGTCTCGCAGGTCGCCTTCATGGCTGACATCCCGCGGAAACTTGGCAGTGAAGCGAAAGTGCTCGGGCATGAGCTGCGCCCAGCGGGCAATGGTGCCGGGAGCGGGACGTGCGTAGAAAGTGGTGTTGCCTT  <  AE015451/1714500‑1714293
                                                                                                                                                                                                                                                                                                                                                                                                                                                             
ACGCCAACAGTAACCAAATGCTTGGCTTCTACAGCCAGGTGTTCAACGCCGTCGAAGGCAACACCACTTTCTACGCACGTCCCGCTCCCGGCACCATTGCCCGCTGGGCGCAGCTCATGCCCGAGCACTTTCGCTTCACTGCCAAGTTTCCGCGGGATGTCAGCCATGAAGGCGACCTGCGAGACCAGCTTGAGCCTGCCTTCGACTTCACCCGGCTGATGGCCCCGCTGCGCCGG                                                                                                                                                                                                                   >  1:295306/1‑236
                          TTCTACAGCCAGGTGTTCAACGCCGTCGAAGGCAACACCACTTTCTACGCACGTCCCGCTCCCGGCACCATTGCCCGCTGGGCGCAGCTCATGCCCGAGCACTTTCGCTTCACTGCCAAGTTTCCGCGGGATGTCAGCCATGAAGGCGACCTGCGAGACCAGCTTGAGCCTGCCTTCGCCTTCACCCGGCTGATGGCCCCGCTGGGCCGGC                                                                                                                                                                                                                  >  2:314743/1‑211
                                                                              gcCCCGCTCCCGGCACCATTGCCCGCTGGGCGCAGCTCATGCCCGAGCACTTTCGCTTCACTGCCAAGTTTCCGCGGGATGTCAGCCATGAAGGCGACCTGCGAGACCAGCTTGAGCCTGCCTTCGACTTCCCCCGGCTGATGGCCCCGCTGGGC                                                                                                                                                                                                                      <  2:125622/153‑1
                                                                               TCCCGCTCCCGGCACCATTGCCCGCTGGGCGCAGCTCATGCCCGAGCACTTTCGCTTCACTGCCAAGTTTCCGCGGGATGTCAGCCATGAAGGCGACCTGCGAGACCAGCTTGAGCCTGCCTTCGACTTCACCGGGCTGATGGCCCCGCT                                                                                                                                                                                                                          >  2:1078061/1‑150
                                                                                                                       CCCGAGCACTTTCGCTTCACTGCCAAGTTTCCGCGGGATGTCAGCCATGAAGGCGACCTGCGAGACCAGCTTGAGCCTGCCTTCGACTTCACCCGGCTGATGGCCCCGCT                                                                                                                                                                                                                          >  2:355634/1‑110
                                                                                                                                                AGTTTCCGCGGGATGTCAGCCATGAAGGCGACCTGCGAGACCAGCTTGAGCCTGCCTTCGACTTCACCCGGCTGCTGGCCCCGCTGGGCCGGCAACTGCAGCCAGTAGGGTGAGACGCGCCG                                                                                                                                                                                     >  2:905991/1‑122
                                                                                                                                                                                 TGCGAGACCAGCTTGAGCCTGCCTTCGACTTCACCCGGCTGATGGCCCCGCTGGGCCGGCAACTGCAGCCAGTAGG                                                                                                                                                                                                  >  2:301166/1‑76
                                                                                                                                                                                              TGAGCCTGCCTTCGACTTCACCCGGCTGATGGCCCCGCTGGGCCGGCAACTGCAGCCAGTAGGGCGATACGCGCCGGCCCAGCGGGGCCATCAGCCGGGTGAAGTCGAAGGCAGGCCCAAGCTGGTCTCGCAGGTCGC                                                                                                                       >  2:207148/1‑138
                                                                                                                                                                                                                                       GCCGGCAACTGCAGCCAGTAGGGTGATACGCGCCGGCCCAGCGGGGCCATCAGCCGGGTGAAGTCGAAGGCAGGCTCAAGCTGGTCTCGCAGGTCGCCTTCATGGCTGACATCCCGCGGAAACTTGGCAGTGAAGCGAAAGTGCTCGGGCATGAGCTGCGCCCAGCGGGCAATGGTGCCGGGAGCGGGACGTGCGTAGAAAGTGGTGTTGCCTT  <  2:750414/214‑1
                                                                                                                                                                                                                                                                                                                                                                                                                                                             
ACGCCAACAGTAACCAAATGCTTGGCTTCTACAGCCAGGTGTTCAACGCCGTCGAAGGCAACACCACTTTCTACGCACGTCCCGCTCCCGGCACCATTGCCCGCTGGGCGCAGCTCATGCCCGAGCACTTTCGCTTCACTGCCAAGTTTCCGCGGGATGTCAGCCATGAAGGCGACCTGCGAGACCAGCTTGAGCCTGCCTTCGACTTCACCCGGCTGATGGCCCCGCTGGGCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/1714239‑1714475
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgggccggcAACTGCAGCCAGTAGGGTGATACGCGCCGGCCCAGCGGGGCCATCAGCCGGGTGAAGTCGAAGGCAGGCTCAAGCTGGTCTCGCAGGTCGCCTTCATGGCTGACATCCCGCGGAAACTTGGCAGTGAAGCGAAAGTGCTCGGGCATGAGCTGCGCCCAGCGGGCAATGGTGCCGGGAGCGGGACGTGCGTAGAAAGTGGTGTTGCCTT  <  AE015451/1714500‑1714293

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.