New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 1842345	37 (0.640)	3 (0.060)	3/318	NT	7.7%	coding (2449/2754 nt)	gacS	Sensor protein GacS
	?	AE015451	= 1842393	38 (0.710)					coding (2401/2754 nt)	gacS	Sensor protein GacS

GCGCCTGGGGATTGTCCTGCTTCAGCAAGGTCTCGCTGCGTTGACACGCTGCCCGTAACTGCGGCACGCCGCAATAGCGTGAGGCACCGTTCAGACGGTGTACCTGCTCGATCAGGCCATTTCGGTCATCGGCTGCGCGGGCGGCGCGTATGGCTTCGCGGTCCGTATCCAGGGAGGCCAGCAGCATGCTCAGCATGTCAGCGGCCAGATCTGCCTTGCCAGCGGCCAGGCGCAGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/1842108‑1842345 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caggcgcaggccGAGCTGCTGACCAACGGCGACGAACTGAAGGTACTCGACCCCGAAGAGGGCCTGCGCCT  <  AE015451/1842393‑1842335                                                                                                                                                                                                                                                                                                           GCGCCTGGGGATTGTCCTGCTTCAGCAAGGTCTCGCTGCGTTGACACGCTGCCCGTAACTGCGGCACGCCGCAATAGCGTGAGGCACCGTTCAGACGGTGTACCTGCTCGATCAGGCCATTTCGGTCATCGGCTGCGCGGGCGGCGCGTATGGCTTCGCGGTCCGTATCCAGGGAGGCCAGCAGCATGCTCAGCATGTCAGCGGCCAGATCTGCCTTGCCAGCGGCCAGGCGCAG                                                                <  1:1035223/235‑1                                                                                             AGACGGTGTACCTGCTCGATCAGGCCATTTCGGTCATCGGCTGCGCGGGCGGCGCGTATGGCTTCGCGGTCCGTATCCAGGGAGGCCAGCAGCATGGTCAGCATGTCAGCGGCCAGATCTGCCTTGCCAGCGGCCAGG                                                                     >  1:443885/1‑138                                                                                                                                                                                                     GTCAGCGGCCAGATCTGCCTTGCCAGCGGCCAGGCGCAGGCCGAGCTGCTGACCAACGGCGACG                                       >  2:221866/1‑64                                                                                                                                                                                                               AGATCTGCCTTGCCAGCGGCCAGGCGCAGGCCGAGCTGCTGACCAACGGCGACGAACTGAAGGTACTCGACCCCGAAGAGGGCCTGCGCCT  <  1:793310/91‑1                                                                                                                                                                                                               AGATCTGCCTTGCCAGCGGCCAGGCGCAGGCCGAGCTGCTGACCAACGGCGACGAACTGAAGGTACTCGACCCCGAAGAGGGCCTGCGCCT  >  2:793307/1‑91                                                                                                                                                                                                                                    AGGCGCAGGCCGAGCTGCTGACCAACGGCGACGAACTGAAGGTACTCGACCCCG                  <  2:308064/54‑1                                                                                                                                                                                                                                                                                                           GCGCCTGGGGATTGTCCTGCTTCAGCAAGGTCTCGCTGCGTTGACACGCTGCCCGTAACTGCGGCACGCCGCAATAGCGTGAGGCACCGTTCAGACGGTGTACCTGCTCGATCAGGCCATTTCGGTCATCGGCTGCGCGGGCGGCGCGTATGGCTTCGCGGTCCGTATCCAGGGAGGCCAGCAGCATGCTCAGCATGTCAGCGGCCAGATCTGCCTTGCCAGCGGCCAGGCGCAGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/1842108‑1842345 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caggcgcaggccGAGCTGCTGACCAACGGCGACGAACTGAAGGTACTCGACCCCGAAGAGGGCCTGCGCCT  <  AE015451/1842393‑1842335

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.