New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 1842345	37 (0.640)	3 (0.060)	3/318	NT	7.7%	coding (2449/2754 nt)	gacS	Sensor protein GacS
	?	AE015451	= 1842393	38 (0.710)					coding (2401/2754 nt)	gacS	Sensor protein GacS

CACGCCGCAATAGCGTGAGGCACCGTTCAGACGGTGTACCTGCTCGATCAGGCCATTTCGGTCATCGGCTGCGCGGGCGGCGCGTATGGCTTCGCGGTCCGTATCCAGGGAGGCCAGCAGCATGCTCAGCATGTCAGCGGCCAGATCTGCCTTGCCAGCGGCCAGGCGCAGGCCCTCTTCGGGGTCGAGTACCTTCAGTTCGTCGCCGTTGGTCAGCAGCTCGGCCTGCGCCTGCTGCGGTGTGCCCAGGCTCAGGCCGGTCCACTTCATCACCACCTGGGCCAGTTGCCGTTCGCTGATCGGTTTGGTCAGGTAGTCGTCCATGCCGCTGTGCAACAACGCGCGTTTTTCGTTGGCCATGGCATGGGCAGTGAGGGCGACGATCGGCAGCGGGTTGCCGCTCTGGGTGTTCTCCCACAGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCG  >  AE015451/1842172‑1842628                                                                                                                                                                                                                              |                                                                                                                                                                                                                                            cACGCCGCAATAGCGTGAGGCACCGTTCAGACGGTGTACCTGCTCGATCAGGCCATTTCGGTCATCGGCTGCGCGGGCGGCGCGTATGGCTTCGCGGTCCGTATCCAGGGAGGCCAGCAGCATGCTCAGCATGTCAGCGGCCAGATCTGCCTTGCCAGCGGCCAGGCGCAGGCCCTCTTCGGGGTCGAGTACCTTCAGTTCGTCGCCGTTGGTCAGCAGCTCGgcctgcgcctgc                                                                                                                                                                                                                                >  1:1076013/1‑235 (MQ=255)  aCGCCGCAATAGCGTGAGGCACCGTTCAGACGGTGTACCTGCTCGATCAGGCCATTTCGGTCATCGGCTGCGCGGGCGGCGCGTATGGCTTCGCGGTCCGTATCCAGGGAGGCCAGCAGCATGCTCAGCATGTCAGCGGCCAGATCTGCCTTGCCAGCGGCCAGGCGCAGGCCCTCTTCGGGGTCGAGTACCTTCAGTTCGTCGCCGTTGGTCAGCAGCTCGGCCTGCGCctgctg                                                                                                                                                                                                                              <  1:798614/236‑1 (MQ=255)        cAATAGCGTGAGGCACCGTTCAGACGGTGTACCTGCTCGATCAGGCCATTTCGGTCATCGGCTGCGCGGGCGGCGCGTATGGCTTCGCGGTCCGTATCCAGGGAGGCCAGCAGCATGCTCAGCATGTCAGCGGCCAGATCTGCCTTGCCAGCGGCCAGGCGCAGGCCCTCTTCGGGGTCGAGTACCTTCAGTTCGTCGCCGTTGGTCAGCAGCTCGGCCTGCGCCTGCTGCGgtgt                                                                                                                                                                                                                        <  1:390107/236‑1 (MQ=255)            aGCGTGAGGCACCGTTCAGACGGTGTACCTGCTCGATCAGGCCATTTCGGTCATCGGCTGCGCGGGCGGCGCGTATGGCTTCGCGGTCCGTATCCAGGGAGGCCAGCAGCATGCTCAGCATGTCAGCGGCCAGATCTGCCTTGCCAGCGGCCAGGCGCAGGCCCTCTTCGGGGTCGAGTACCTTCAGTTCGTCGCCGTTGGTCAGCAGCTCGGCCTGCGCCTGCTGCGgtgt                                                                                                                                                                                                                        <  2:846294/232‑1 (MQ=255)                   ggCACCGTTCAGACGGTGTACCTGCTCGATCAGGCCATTTCGGTCATCGGCTGCGCGGGCGGCGCGTATGGCTTCGCGGTCCGTATCCAGGGAGGCCAGCAGCATGCTCAGCATGTCAGCGGCCAGATCTGCCTTGCCAGCGGCCAGGCGCAGGCCCTCTTCGGGGTCGAGTACCTTCAGTTCGTCGCCGTTGGTCAGCAGCTCGGCCTGCGCCTGCTGCGGTGTGCCCAGGCTCa                                                                                                                                                                                                             >  1:308696/1‑236 (MQ=255)                      aCCGTTCAGACGGTGTACCTGCTCGATCAGGCCATTTCGGTCATCGGCTGCGCGGGCGGCGCGTATGGCTTCGCGGTCCGTATCCAGGGAGGCCAGCAGCATGCTCAGCATGTCAGCGGCCAGATCTGCCTTGCCAGCGGCCAGGCGCAGGCCCTCTTCGGGGTCGAGTACCTTCAGTTCGTCGCCGTTGGTCAGCAGCTCGGCCTGCGCCTGCTGCGGTGTGCCCAGGCTCAGGc                                                                                                                                                                                                          >  1:466267/1‑236 (MQ=255)                        cGTTCAGACGGTGTACCTGCTCGATCAGGCCATTTCGGTCATCGGCTGCGCGGGCGGCGCGTATGGCTTCGCGGTCCGTATCCAGGGAGGCCAGCAGCATGCTCAGCATGTCAGCGGCCAGATCTGCCTTGCCAGCGGCCAGGCGCAGGCCCTCTTCGGGGTCGAGTACCTTCAGTTCGTCGCCGTTGGTCAGCAGCTCGGCCTGCGCCTGCTGCGGTGTGCCCAGGCTCAGGCCg                                                                                                                                                                                                        <  1:425346/236‑1 (MQ=255)                                     tACCTGCTCGATCAGGCCATTTCGGTCATCGGCTGCGCGGGCGGCGCGTATGGCTTCGCGGTCCGTATCCAGGGAGGCCAGCAGCATGCTCAGCATGTCAGCGGCCAGATCTGCCTTGCCAGCGGCCAGGCGCAGGCCCTCTTCGGGGTCGAGTACCTTCAGTTCGTCGCCGTTGGTCAGCAGCTCGGCCTGCGCCTGCTGCGGTGTGCCCAGGCTCAGGCCGGTCCACTtcatca                                                                                                                                                                                           >  1:1034711/1‑236 (MQ=255)                                        cTGCTCGATCAGGCCATTTCGGTCATCGGCTGCGCGGGCGGCGCGTATGGCTTCGCGGTCCGTATCCAGGGAGGCCAGCAGCATGCTCAGCATGTCAGCGGCCAGATCTGCCTTGCCAGCGGCCAGGCGCAGGCCCTCTTCGGGGTCGAGTACCTTCAGTTCGTCGCCGTTGGTCAGCAGCTCGGCCTGCGCCTGCTGCGgtgt                                                                                                                                                                                                                        <  2:682531/204‑1 (MQ=255)                                                tCAGGCCATTTCGGTCATCGGCTGCGCGGGCGGCGCGTATGGCTTCGCGGTCCGTATCCAGGGAGGCCAGCAGCATGCTCAGCATGTCAGCGGCCAGATCTGCCTTGCCAGCGGCCAGGCGCAGGCCCTCTTCGGGGTCGAGTACCTTCAGTTCGTCGCCGTTGGTCAGCAGCTCGGCCTGCGCctgctg                                                                                                                                                                                                                              >  2:77462/1‑190 (MQ=255)                                                tCAGGCCATTTCGGTCATCGGCTGCGCGGGCGGCGCGTATGGCTTCGCGGTCCGTATCCAGGGAGGCCAGCAGCATGCTCAGCATGTCAGCGGCCAGATCTGCCTTGCCAGCGGCCAGGCGCAGGCCCTCTTCGGGGTCGAGTACCTTCAGTTCGTCGCCGTTGGTCAGCAGCTCGGCCTGCGCCTGCTGCGGTGTGCCCAGGCTCAGGCCGGTCCACTTCATCACCACCTGGGc                                                                                                                                                                                 >  1:1048762/1‑235 (MQ=255)                                                tCAGGCCATTTCGGTCATCGGCTGCGCGGGCGGCGCGTATGGCTTCGCGGTCCGTATCCAGGGAGGCCAGCAGCATGCTCAGCATGTCAGCGGCCAGATCTGCCTTGCCAGCGGCCAGGCGCAGGCCCTCTTCGGGGTCGAGTACCTTCAGTTCGTCGCCGTTGGTCAGCAGCTCGGCCTGCGCCTGCTGCGGTGTGCCCAGGCCCAGGCCGGTCCACTTCATCACCACCTGGGc                                                                                                                                                                                 >  1:808887/1‑235 (MQ=255)                                                   ggCCATTTCGGTCATCGGCTGCGCGGGCGGCGCGTATGGCTTCGCGGTCCGTATCCAGGGAGGCCAGCAGCATGCTCAGCATGTCAGCGGCCAGATCTGCCTTGCCAGCGGCCAGGCGCAGGCCCTCTTCGGGGTCGAGTACCTTCAGTTCGTCGCCGTTGGTCAGCAGCTCGGCCTGCGCCTGCTGCGGTGTGCCCAGGCTCa                                                                                                                                                                                                             <  2:1028214/204‑1 (MQ=255)                                                           cGGTCATCGGCGGCGCGGGCGGCGCGTATGGCTTCGCGGTCCGTATCCAGGGAGGCCAGCAGCATGCTCAGCATGTCAGCGGCCAGATCTGCCTTGCCAGCGGCCAGGCGCAGGCCCTCTTCGGGGTCGAGTACCTTCAGTTCGTCGCCGTTGGTCAGCAGCTCGGCCTGCGCCTGCTGCGGtgtg                                                                                                                                                                                                                       <  2:157153/186‑1 (MQ=255)                                                                             gcggcgCGTATGGCTTCGCGGTCCGTATCCAGGGAGGCCAGCAGCATGCTCAGCATGTCAGCGGCCAGATCTGCCTTGCCAGCGGCCAGGCGCAGGCCCTCTTCGGGGTCGAGTACCTTCAGTTCGTCGCCGTTGGTCAGCAGCTCGGCCTGCGCCTGCTGCGGTGTGCCCAGGCTCAGGCCGGTCCACTTCATCACCACCTGGGCCAGTTGCCGTTCGCTGATCGGTTTGGTCAg                                                                                                                                                   <  1:787375/236‑1 (MQ=255)                                                                                          cTTCGCGGTCCGTATCCAGGGAGGCCAGCAGCATGCTCAGCATGTCAGCGGCCAGATCTGCCTTGCCAGCGGCCAGGCGCAGGCCCTCTTCGGGGTCGAGTACCTTCAGTTCGTCGCCGTTGGTCAGCAGCTCGGCCTGCGCCTGCTGCGGTGTGCCCAGGCTCAGGCCGGTCCACTTCATCACCACCTGGGCCAGTTGCCGTTCGCTGATCGGTTTGGTCAGGTAGTCGTCCATg                                                                                                                                      <  1:495197/236‑1 (MQ=255)                                                                                              gcgGTCCGTATCCAGGGAGGCCAGCAGCATGCTCAGCATGTCAGCGGCCAGATCTGCCTTGCCAGCGGCCAGGCGCAGGCCCTCTTCGGGGTCGAGTACCTTCAGTTCGTCGCCGTTGGTCAGCAGCTCGGCCTGCGCCTGCTGCGGTGTGCCCAGGCTCAGGCCGGTCCACTTCATCACCACCTGGGCCAGTTGCCGTTCGc                                                                                                                                                                   <  2:937926/203‑1 (MQ=255)                                                                                                ggTCCGTATCCAGGGAGGCCAGCAGCATGCTCAGCATGTCAGCGGCCAGATCTGCCTTGCCAGCGGCCAGGCGCAGGCCCTCTTCGGGGTCGAGTACCTTCAGTTCGTCGCCGTTGGTCAGCAGCTCGGCCTGCGCCTGCTGCGGTGTGCCCAGGCTCAGGCCGGTCCACTtcatca                                                                                                                                                                                           >  2:834701/1‑177 (MQ=255)                                                                                                ggTCCGTATCCAGGGAGGCCAGCAGCATGCTCAGCATGTCAGCGGCCAGATCTGCCTTGCCAGCGGCCAGGCGCAGGCCCTCTTCGGGGTCGAGTACCTTCAGTTCGTCGCCGTTGGTCAGCAGCTCGGCCTGCGCCTGCTGCGGTGTGCCCAGGCTCAGGCCGGTCCACTtcatca                                                                                                                                                                                           <  1:834704/177‑1 (MQ=255)                                                                                                               aGGCCAGCAGCATGCTCAGCATGTCAGCGGCCAGATCTGCCTTGCCAGCGGCCAGGCGCAGGCCCTCTTCGGGGTCGAGTACCTTCAGTTCGTCGCCGTTGGTCAGCAGCTCGGCCTGCGCCTGCTGCGGTGTGCCCAGGCTCAGGCCGGTCCACTTCATCACCACCTGGGCCAGTTGCCGTTCGCTGATCGGTTTGGTCAGGTAGTCGTCCATGCCGCTGTGCAACAAcgcgcg                                                                                                                  >  1:367186/1‑235 (MQ=255)                                                                                                                    agcagcATGCTCAGCATGTCAGCGGCCAGATCTGCCTTGCCAGCGGCCAGGCGCAGGCCCTCTTCGGGGTCGAGTACCTTCAGTTCGTCGCCGTTGGTCAGCAGCTCGGCCTGCGCCTGCTGCGGTGTGCCCAGGCTCa                                                                                                                                                                                                             >  1:904736/1‑139 (MQ=255)                                                                                                                    agcagcATGCTCAGCATGTCAGCGGCCAGATCTGCCTTGCCAGCGGCCAGGCGCAGGCCCTCTTCGGGGTCGAGTACCTTCAGTTCGTCGCCGTTGGTCAGCAGCTCGGCCTGCGCCTGCTGCGGTGTGCCCAGGCTCa                                                                                                                                                                                                             <  2:904733/139‑1 (MQ=255)                                                                                                                    agcagcATGCTCAGCATGTCAGCGGCCAGATCTGCCTTGCCAGCGGCCAGGCGCAGGCCCTCTTCGGGGTCGAGTACCTTCAGTTCGTCGCCGTTGGTCAGCAGCTCGGCCTGCGCCTGCTGCGGTGTGCCCAGGCTCAGGCCGGTCCACTTCATCACCACCTGGGCCAGTTGCCGTTCGCTGATCGGTTTGGTCAGGTAGTCGTCCATGCCGCTGTGCCACAACGCGCGTTTTTc                                                                                                            >  1:1024964/1‑236 (MQ=255)                                                                                                                         caTGCTCAGCATGTCAGCGGCCAGATCTGCCTTGCCAGCGGCCAGGCGCAGGCCCTCTTCGGGGTCGAGTACCTTCAGTTCGTCGCCGTTGGTCAGCAGCTCGGCCTGCGCCTGCTGCGGTGTGCCCAGGCTCAGGCCGGTCCACTTCATCACCACCTGGGCCAGTTGCCGTTCGCTGATCGGTTTGGTCAGGTAGTCGTCCATGCCGCTGTGCAACAACGCGCGTTTTTCGTTg                                                                                                        <  1:641149/235‑1 (MQ=255)                                                                                                                                               aGATCTGCCTTGCCAGCGGCCAGGCGCAGGCCCTCTTCGGGGTCGAGTACCTTCAGTTCGTCGCCGTTGGTCAGCAGCTCGGCCTGCGCCTGCTGCGGTGTGCCCAGGCTCAGGc                                                                                                                                                                                                          <  2:1059501/115‑1 (MQ=255)                                                                                                                                               aGATCTGCCTTGCCAGCGGCCAGGCGCAGGCCCTCTTCGGGGTCGAGTACCTTCAGTTCGTCGCCGTTGGTCAGCAGCTCGGCCTGCGCCTGCTGCGGTGTGCCCAGGCTCAGGc                                                                                                                                                                                                          >  1:1059504/1‑115 (MQ=255)                                                                                                                                                          gCCAGCGGCCAGGCGCAGGCCCTCTTCGGGGTCGAGTACCTTCAGTTCGTCGCCGTTGGTCAGCAGCTCGGCCTGCGCCTGCTGCGGTGTGCCCAGGCTCAGGCCGGTCCACGTCATcacc                                                                                                                                                                                         >  1:423109/1‑121 (MQ=255)                                                                                                                                                                ggCCAGGCGCAGGCCCTCTGCGGGGTCGAGTACCTTCAGTTCGTCGCCGTTGGTCAGCAGCTCGGCCTGCGCCTGCTGCGGTGTGCCCAGGCTCAGGCCGGTCCACTTCATCACCACCTGGGCCAGTTGCCGTTCGCTGATCGGTTTGGTCAgg                                                                                                                                                  <  2:319982/154‑1 (MQ=255)                                                                                                                                                                    aGGCGCAGGCCCTCTTCGGGGTCGAGTACCTTCAGTTCGTCGCCGTTGGTCAGCAGCTCggcctgcgcctggccgctggcaaggcagatct                                                                                                                                                                                                             >  2:793307‑M2/1‑59 (MQ=255)                                                                                                                                                                    aGGCGCAGGCCCTCTTCGGGGTCGAGTACCTTCAGTTCGTCGCCGTTGGTCAGCAGCTCggcctgcgcctggccgctggcaaggcagatct                                                                                                                                                                                                             <  1:793310‑M2/91‑33 (MQ=255)                                                                                                                                                                           ggCCCTCTTCGGGGTCGAGTACCTTCAGTTCGTCGCCGTTGGTCAGCAGCTCGGCCTGCGCCTGCTGCGGTGTGCCCAGGCTCAGGCCGGTCCACTTCATCACCACCTGGGCCAGTTGCCGTTCGCTGATCGGTTTg                                                                                                                                                        <  2:499835/137‑1 (MQ=255)                                                                                                                                                                                    cGGGGTCGAGTACCTTCAGTTCGTCGCCGTTGGTCAGCAGCTCggcctgcgcct                                                                                                                                                                                                                                  <  2:308064‑M2/54‑12 (MQ=255)                                                                                                                                                                                               aCCTTCAGTTCGTCGCCGTTGGTCAGCAGCTCGGCCTGCGCCTGCTGCGGTGTGCCCAGGCTCAGGCCGGTCCACTTCATCACCACCTGGGCCAGTTGCCGTTCGCTGATCGGTTTGGTCAGGTAGTCGTCCATGCCGCTGTGCAACAACGCGCGTTTTTCGTTGGCCATGGCATGGGCAGTGAGGGCGACGATCGGCAGCGGGTTGCCGCTCTGGGTGTTCTCCcacc                                        >  1:247427/1‑228 (MQ=255)                                                                                                                                                                                               aCCTTCAGTTCGTCGCCGTTGGTCAGCAGCTCGGCCTGCGCCTGCTGCGGTGTGCCCAGGCTCAGGCCGGTCCACTTCATCACCACCTGGGCCAGTTGCCGTTCGCTGATCGGTTTGGTCAGGTAGTCGTCCATGCCGCTGTGCAACAACGCGCGTTTTTCGTTGGCCATGGCATGGGCAGTGAGGGCGACGATCGGCAGCGGGTTGCCGCTCTGGGTGTTCTCCCACAGGCGGa                                  >  1:390745/1‑235 (MQ=255)                                                                                                                                                                                               aCCTTCAGTTCGTCGCCGTTGGTCAGCAGCTCGGCCTGCGCCTGCTGCGGTGTGCCCAGGCTCAGGCCGGTCCACTTCATCACCACCTGGGCCAGTTGCCGTTCGCTGATCGGTTTGGTCAGGTAGTCGTCCATGCCGCTGTGCAACAACGCGCGTTTTTCGTTGGCCATGGCATGGGCAGTGAGGGCGACGATCGGCAGCGGGTTGCCGCTCTGGGTGTTCTCCCACAGGCGGa                                  >  1:809766/1‑235 (MQ=255)                                                                                                                                                                                               aCCTTCAGTTCGTCGCCGTTGGGCAGCAGCTCGGCCTGCGCCTGCTGCGGTGTGCCCAGGCTCAGGCCGGTCCACGTCATCACCACCTGGGCCAGTTGCCGTACGCTGATCGGTTTGGTCAGGTAGTCGTCCATGCCGCTGTGCAACAACGCGCGTTTTTCGTTg                                                                                                        <  2:591637/165‑1 (MQ=255)                                                                                                                                                                                                 cTTCAGTTCGTCGCCGTTGGTCAGCAGCTCGGCCTGCGCCTGCTGCGGTGTGCCCAGGCTCAGGCCGGTCCACTTCATCACCACCTGGGCCAGTTGCCGTTCGCTGATCGGTTTGGTCAGGTAGTCGTCCATGCCGCTGTGCAACAACGCGCGTTTTTCGTTGGCCATGGCATGGGCAGTGAGGGCGACGATCGGCAGCGGGTTGCCGctc                                                        <  2:367183/211‑1 (MQ=255)                                                                                                                                                                                                 cTTCAGTTCGTCGCCGTTGGTCAGCAGCTCGGCCTGCGCCTGCTGCGGTGTGCCCAGGCTCAGGCCGGTCCACTTCATCACCACCTGGGCCAGTTGCCGTTCGCTGATCGGTTTGGTCAGGTAGTCGTCCATGCCGCTGTGCAACAACGCGCGTTTTTCGTTGGCCATGGCATGGGCAGTGAGGGCGACGATCGGCAGCGGGTTGCCGCTCTGGGTGTTCTCCCACAGGCGGAt                                 <  2:398354/234‑1 (MQ=255)                                                                                                                                                                                                       gtcggcgCCGTTGGTCAGCAGCTCGGCCTGCGCCTGCTGCGGTGTGCCCAGGCTCAGGCCGGTCCACTGCATCACCACCTGGGCCAGTGGcc                                                                                                                                                                         <  2:89900/91‑1 (MQ=255)                                                                                                                                                                                                         cgtcgCCGTTGGTCAGCAGCTCggcctgcgcctggccgctggcaaggcagatctggccgctgac                                                                                                                                                                                                   >  2:221866‑M2/1‑22 (MQ=255)                                                                                                                                                                                                              ccGTTGGTCAGCAGCTCGGCCTGCGCCTGCTGCGGTGTGCCCAGGCTCAGGCCGGTCCACTTCATCACCACCTGGGCCAGTTGCCGTTCGCTGTTCgggt                                                                                                                                                          >  1:241947/1‑98 (MQ=255)                                                                                                                                                                                                              ccGTTGGTCAGCAGCTCGGCCTGCGCCTGCTGCGGTGTGCCCAGGCTCAGGCCGGTCCACTTCATCACCACCTGGGCCAGTTGCCGTTCGCTGACCGGtt                                                                                                                                                          >  2:71743/1‑100 (MQ=255)                                                                                                                                                                                                               cGTTGGTCAGCAGCTCGGCCTGCGCCTGCTGCGGTGTGCCCAGGCTCAGGCCGGTCCACTTCATCACCACCTGGGCCAGTTGCCGTTCGCTGATCGGTTTGGTCAGGTAGTCGTCCATGCCGCTGTGCAACAACGCGCGtttt                                                                                                              >  2:343135/1‑143 (MQ=255)                                                                                                                                                                                                               cGTTGGTCAGCAGCTCGGCCTGCGCCTGCTGCGGTGTGCCCAGGCTCAGGCCGGTCCACTTCATCACCACCTGGGCCAGTTGCCGTTCGCTGATCGGTTTGGTCAGGTAGTCGTCCATGCCGCTGTGCAACAACGCGCGtttt                                                                                                              <  1:343138/143‑1 (MQ=255)                                                                                                                                                                                                                      cagcagCTCGGCCTGCGCCTGCTGCGGTGTGCCCAGGCTCAGGCCGGTCCACTTCATCACCACCTGGGCCAGCTGCCGTTCGCTGATCGGTTTGGTCAGGTAGTCGTCCATGCCGCTGTGCAACAACGCGCGCTTTTCGTTGGCCATGGCATGGGCAGTGAGGGCGACGATCGGCAGCGGGt                                                                >  1:152227/1‑182 (MQ=255)                                                                                                                                                                                                                            cTCGGCCTGCGCCTGCTGCGGTGTGCCCAGGCTCAGGCCGGTCCACTTCATCACCACCTGGGCCAGtt                                                                                                                                                                            <  2:26573/68‑1 (MQ=255)                                                                                                                                                                                                                            cTCGGCCTGCGCCTGCTGCGGTGTGCCCAGGCTCAGGCCGGTCCACTTCATCACCACCTGGGCCAGtt                                                                                                                                                                            >  1:26574/1‑68 (MQ=255)                                                                                                                                                                                                                            cTCGGCCTGCGCCTGCTGCGGTGTGCCCAGGCTCAGGCCGGTCCACTTCATCACCACCTGGGCCAGTTGCCGTTCGCTGATCGGTTTGGTCAGGTAGTCGTCCATGCCGCTGTGCAACAACGCGCGTTTTTCGTTGGCCATGGCATggg                                                                                           >  1:901511/1‑149 (MQ=255)                                                                                                                                                                                                                              cGGCCTGCGCCTGCTGCGGTGTGCCCAGGCTCAGGCCGGTCCACTTCATCACCACCTGGGCCAGTTGCCGTTCGCTGATCGGTTTGGTCAGGTAGTCGTCCATGCCGCTGTGCAACAACGCGCGTTTTTCGTTGGCCATGGCATGGGCAGTGAGGGCGACGATCGGCAGCGGGTTGCCGCTCTGGGTGTTCTCCCACAGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCg  >  1:280178/1‑236 (MQ=255)                                                                                                                                                                                                                              cGGCCTGCGCCTGCTGCGGTGTGCCCAGGCTCAGGCCGGTCCACTTCATCACCACCTGGGCCAGTTGCCGTTCGCTGATCGGTTTGGTCAGGTAGTCGTCCATGCCGCTGTGCAACAACGCGCGTTTTTCGTTGGCCATGGCATGGGCAGTGAGGGCGACGATCGGCAGCGGGTTGCCGCTCTGGGTGTTCTCCCACAGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCg  >  1:767312/1‑236 (MQ=255)                                                                                                                                                                                                                              |                                                                                                                                                                                                                                            CACGCCGCAATAGCGTGAGGCACCGTTCAGACGGTGTACCTGCTCGATCAGGCCATTTCGGTCATCGGCTGCGCGGGCGGCGCGTATGGCTTCGCGGTCCGTATCCAGGGAGGCCAGCAGCATGCTCAGCATGTCAGCGGCCAGATCTGCCTTGCCAGCGGCCAGGCGCAGGCCCTCTTCGGGGTCGAGTACCTTCAGTTCGTCGCCGTTGGTCAGCAGCTCGGCCTGCGCCTGCTGCGGTGTGCCCAGGCTCAGGCCGGTCCACTTCATCACCACCTGGGCCAGTTGCCGTTCGCTGATCGGTTTGGTCAGGTAGTCGTCCATGCCGCTGTGCAACAACGCGCGTTTTTCGTTGGCCATGGCATGGGCAGTGAGGGCGACGATCGGCAGCGGGTTGCCGCTCTGGGTGTTCTCCCACAGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCG  >  AE015451/1842172‑1842628

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.