New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 1886259	54 (0.940)	5 (0.100)	5/310	NT	9.2%	coding (926/1488 nt)	rmuC	DNA recombination limiting inversions protein
	?	AE015451	= 1886243	50 (0.960)					coding (910/1488 nt)	rmuC	DNA recombination limiting inversions protein

CAGGCCTTGAAGGGCCAGAAAACCCAGGGTAACTGGGGTGAGCTTATCCTCGAACGTGTGCTGGAACATGCCGGCCTGGAAAAGGGCCGCGAATACCAGACCCAGGTCAGCCTGAAAAGCGCCGATGGTGAGCGTTTCCAGCCGGATGTGCTGATCATGCTGCCCGGCGACAAGCAGGTGGTGGTGGACGCCAAGGTCAGCCTCACGGCGTACCAGCAGTTCGTTGCCGGCAACGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/1886024‑1886259 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcgttgccggcaacgaACTGCTGGTACGCCGTGAGGCTGACCTTGGCGTCCACCACCACCTGCTTGTCGCCGGGCAGCATGATCAGCACATCCGGCTGGAAACGCTCACCATCGGCGCTTTTCAGGCTGACCTGGGTCTGGTATTCGCGGCCCTTTTCCAGGCCGGCATGTTCCAGCACACGTTCGAGGATAAGCTCACCC  <  AE015451/1886243‑1886059                                                                                                                                                                                                                                                                                                                                                                                                                                       CAGGCCTTGAAGGGCCAGAAAACCCAGGGTAACTGGGGTGAGCTTATCCTCGAACGTGTGCTGGAACATGCCGGCCTGGAAAAGGGCCGCGAATACCAGACCCAGGTCAGCCTGAAAAGCGCCGATGGTGAGCGTTTCCAGCCGGATGTGCTGATCATGCTGCCCGGCGACAAGCAGGTGGTGGTGGACGCCAAGGTCAGCCTCACGGCGTACCAGCAGTTCGTTGCCGGCAACG                                                                                                                                                                                            >  1:827457/1‑235                                                           TGCTGGAACATGCCGGCCTGGAAAAGGGCCGCGAATACCAGACCCAGGTCAGCCTGAAAAGCGCCGATGGTGAGCGTTTCCAGCCGGATGTGCTGATCATGCTGCCCGGCGACAAGCAGGTGGTGGTGGACGCCAAGGTCAGCCTCACGGCGTACCAGCAGTTCGTTGCCGGCAACGAACTGCTGGTACG                                                                                                                                                                               <  2:378454/190‑1                                                             aTGGAACATGCCGGCCTGGAAAAGGGCCGCGAATACCAGACCCAGGTCAGCCTGAAAAGCGCCGATGGTGAGCGTTTCCAGCCGGATGTGCTGATCATGCTGCCCGGCGACAAGCAGGTGGTGGTGGACGCCAAGGTCAGCCTCACGGCGTACCAGCAGTTCGTTGCCGG                                                                                                                                                                                                 <  1:92596/169‑1                                                                             TGGAAAAGGGCCGCGAATACCAGACCCAGGTCAGCCTGAAAAGCGCCGATGGTGAGCGTTTCCAGCCGGATGTGCTGATCATGCTGCCCGGCGACAAGCAGGTGGTGGTGGACGCCAAGGTCAGCCTCACGGCGTACCAGCAGTTCGTTGCCGGCAACGAACTGCTGGTACGCCGTGAGGCTGACCTTGGCGTCCACCCCCACCTGCa                                                                                                                                           >  2:357905/1‑207                                                                                    gtGCCGCGAATACCAGACCCAGGTCAGCCTGAAAAGCGCCGATGGTGAGCGTTTCCAGCCGGATGTGCTGATCATGCTGCCCGGCGACAAGCAGGTGGTGGTGGACGCCAAGGTCAGCCTCACGGCGTACCAGCAGTTCGTTGCCGGCAACG                                                                                                                                                                                            <  2:734074/150‑1                                                                                             ATACCAGACCCAGGTCAGCCTGAAAAGCGCCGATGGTGAGCGTTTCCAGCCGGATGTGCTGATCATGCTGCCCGGCGACAAGCAGGTGGTGGTGGACGCCAAGGTCAGCCTCACGGCGTACCAGCAGTTCGTTGCGGGCAAC                                                                                                                                                                                             >  2:292927/1‑142                                                                                                                      AGCGCCGATGGTGAGCGGTTCCAGCCGGATGTGCTGATCATGCTGCCCGGCGACAAGCAGGTGGTGGTGGACGCCAAGGTCAGCCTCACGGCGTACCAGCAGTTCGTTGCCGGCAACGAACTGCTGGTACGCCGTGAGGCTGACCTTGGCGTCCACCACCACCTGCTTGTCG                                                                                                                                      <  2:463744/172‑1                                                                                                                                                                  GCCCGGCGACAAGCAGGTGGTGGTGGACGCCAAGGTCAGCCTCACGGCGTACCAGCAGTTCGTTGCCGGCAACGAACTGCTGGTACGCCGTGAGGCTGACCTTGGCGTCCACCACCACCTGCTTGTCGCCGGGCAGCATGATCAGCACATCCGGCTGGAAACGCTCACCATCGGCGCTTTTCAGGCTGACCTGGGTCTGGTATTCGCGGCCCTTTTCCAGGCCGGCct                                  >  1:357908/1‑226                                                                                                                                                                                           agagacagGGTCAGCCTCACGGCGTACCAGCAGTTCGTTGCCGGCAACGAACTGCTGGTACGCCGTGAGGCTGACCTTGGCGTCCACCACCACCTGCTTGTCGCCGGGCAGCATGATCAGCACATCCGGCTGGAAACGCTCACCATCGGCGCTTTTCAGGCTGACCTGGGTCTGGTATTCGCGGCCCTTTTCCAGGCCGGCATGTTCCAGCACACGTTCGAGGATAAGCTCACCC  <  1:378457/227‑1                                                                                                                                                                                                                                TTGCCGGCAACGAACTGCTGGTACGCCGTGAGGCTGACCTTGGCGTCCACCACCACCTGCTTGTCGCCGGGCAGCATGATCAGCACATCCGGCTGGAAACGCTCACCATCGGCGCTTTTCAGGCTGACCTGGGTCTGGTATTCGCGGCCCTTTTCCAGGCCGGCATGTTCCAGCACACGTTCGAGGATAA          <  2:810431/190‑1                                                                                                                                                                                                                                                                                                                                                                                                                                       CAGGCCTTGAAGGGCCAGAAAACCCAGGGTAACTGGGGTGAGCTTATCCTCGAACGTGTGCTGGAACATGCCGGCCTGGAAAAGGGCCGCGAATACCAGACCCAGGTCAGCCTGAAAAGCGCCGATGGTGAGCGTTTCCAGCCGGATGTGCTGATCATGCTGCCCGGCGACAAGCAGGTGGTGGTGGACGCCAAGGTCAGCCTCACGGCGTACCAGCAGTTCGTTGCCGGCAACGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/1886024‑1886259 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcgttgccggcaacgaACTGCTGGTACGCCGTGAGGCTGACCTTGGCGTCCACCACCACCTGCTTGTCGCCGGGCAGCATGATCAGCACATCCGGCTGGAAACGCTCACCATCGGCGCTTTTCAGGCTGACCTGGGTCTGGTATTCGCGGCCCTTTTCCAGGCCGGCATGTTCCAGCACACGTTCGAGGATAAGCTCACCC  <  AE015451/1886243‑1886059

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.