| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AE015451 | 2064117 = | 47 (0.820) | 3 (0.060) | 3/310 | NT | 6.8% | intergenic (+21/+80) | PP_1840/PP_1841 | conserved protein of unknown function/Cytochrome c family protein |
| ? | AE015451 | 2064133 = | 40 (0.770) | intergenic (+37/+64) | PP_1840/PP_1841 | conserved protein of unknown function/Cytochrome c family protein | |||||
CGAGTATTTTCAGCCGGTTTATTTACGCAAGTTGATACGCGACCCGCAAAGCCTGCGGCGGTGGCCGCAGGCGAAGATGCCGGGGTTTGCCGAAAGTGTGTTGAGTGAACAGGAACTGGATGCGCTGTTGGCCTATTTGGGGCACATGGCAACGCGCAAGCCTTGAGGGCCTATTCGCGGGTGAACCCGCTCCTACAACGGCAGGTGGTGTCCATCCATCAATGTGTAGGCGCGGGTTAACCCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AE015451/2064362‑2064117‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcgggttaacccgcgCCTACACATTGATGGATGGACACCACCTGCCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCCTCAAGGCTTGCGCGTTGCCATGTGCCCCAAATAGGCCAACAGCGCATCCAGTTCCTGTTCACTCAACACACTTTCGGCAAACCCCGGCATCTTCGCCTGCGGCCACCGCCGCAGGCTTTGCGGGTCGCGTATCAACTTGCGTAAATAAACCGGCTGAAAATA > AE015451/2064133‑2064358 CGAGTATTTTCAGCCGGTTTATTTACGCAAGTTGATACGCGACCCGCAAAGCCTGCGGCGGTGGCCGCAGGCGAAGATGCCGGGGTTTGCCGAAAGTGTGTTGAGTGAACAGGAACTGGATGCGCTGTTGGCCTATTTGGGGCACATGGCAACGCGCAAGCCTTGAGGGCCTATTCGCGGGTGAACCCGCTCCTACAACGGCAGGTGGTGTCCATCCATCAATGTGTAGGCGCGG > 1:8079/1‑235CGAGTATTTTCAGCCGGTTTATTTACGCAAGTTGATACGCGACCCGCAAAGCCTGCGGCGGTGGCCGCAGGCGAAGATGCCGGGGTTTGCCGAAAGTGTGTTGAGTGAACAGGAACTGGATGCGCTGTTGGCCTATTTGGGGCACATGGCAACGCGCAAGCCTTGAGGGCCTATTCGCGGGTGAACCCGCTCCTACAACGGCAGGTGGTGTCCATCCATCAATGTGTAGGCGCGG > 1:923463/1‑235 GGTTTATTTACGCAAGTTGATACGCGACCCGCAAAGCCTGCGGCGGTGGCCGCAGGCGAAGATGCCGGGGTTTGCCGAAAGTGTGTTGAGTGAACAGGAACTGGATGCGCTGTTGGCCTATTTGGGGCACATGGCAACGCGCAAGCCTTGAGGGCCTATTCGCGGGTGAACCCGCTCCTACAACGGCAGGTGGTGTCCATCCATCAATGTGTAGGCGCGGGTTA < 1:707448/224‑1 GTGGCCGCAGGCGAAGATGCCGGGGTTTGCCGAAAGTGTGTTGAGTGAACAGGAACTGGATGCGCTGTTGGCCTATTTGGGGCACATGGCAACGCGCAAGCCTTGAGGGCCTATTCGCGGGTGAACCCGCTCCTACAACGGCAGGTGGTGTCCATCCATCAATGTGTAGGCGC < 2:299426/173‑1 GGGGTTTGCCGAAAGTGTGTTGAGTGAACAGGAACTGGATGCGCTGTTGGCCTATTTGGGGCACATGGCAACGCGCAAGCCTTGAGGGCCTATTCGCGGGTGAACCCGCTCCTACAACGGCAGGTGGTGTCCATCCATCAATGTGTAGGCGCGG < 2:958007/154‑1 CCGAAGGTGTGTGGAGTGAACAGGAACGGGATGCGCTGTTGGCCTATTTGGGGCACATGGCAACGCGCAAGCCTTGAGGGCCTATTCGCGGGTGAACCCGCTCCTACAACGGCAGGTGGTGTCCATCCATCAATGTGTAGGCGCGGGTTA < 2:170192/150‑1 AACAGGAACTGGATGCGCTGTTGGCCTATTTGGGGCACATGGCAACGCGCAAGCCTTGAGGGCCTATTCGCGGGTGAACCCGCTCCTACAACGGCAGGTGGTGTCCATCCATCAATGTGTAGGCGCGGGTTAACCCGCGCCTACACATTGATGGATGGACACCACCTGCCGTTGTA < 1:707705/176‑1 cgGGATGCGCTGTTGGCCTATTTGGGGCACATGGCAACGCGCAAGCCTTGAGGGCCTATTCGCGGGTGAACCCGCTCCTACAACGGCAGGTGGTGTCCATCCATCAATGTGTAGGCGCGGGTTAACCCGCGCCTACACATTGATGGATGG < 1:139925/148‑1 ACGGCAGGTGGTGTCCATCCATCAATGTGTAGGCGCGGGTTAACCCGCGCCTACACATTGATGGATGGACACCACCTGCCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCCTCAAGGCTTGCGCGTTGCCATGTGCCCCAAATAGGCCCACAGCGCATCCAGT > 2:974774/1‑165 cgtcCGCGCGTTAACCCGCCCCTCCACATTGATGGATGGACACCACCTTCCGTTGTAGCAGCGGGTTCACCCGCGAATAGGCCCTCAAGGCTTGCGCGTTGCCATGTGCC < 2:991674/106‑1 GGCGCGGGTTAACCCGCGCCTACACATTGATGGATGGACACCACCTGCCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCCTCAAGGCTTGCGCGTTGCCATGTGCCCCAAATAGGCCAACAGCGCATCCAGTTCCTGTTCACTCAACACACTTTCGGCAAACCCCGGCATCTTCGCCTGCGGCCACCGCCGCAGGCTTTGCGGGTCGCGTATCAACTTGCGTAAATAAACCG > 1:316800/1‑234 GCGCGGGTTAACCCGCGCCTACACATTGATGGATGGACACCACCTGCCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCCTCAAGGCTTGCGCGTTGCCATGTGCCCCAAATCGGCCAACAGCGCATCAAGTTCCTGTTCACTCAACACACT > 2:846590/1‑153 CGCGGGTTAACCCGCGCCTACACATTGATGGATGGACACCACCTGCCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCCTCAAGGCTTGCGCGTTGCCATGTGCCCCAAATAGGCCAACAGCGCATCCAGTTCCTGTTCACTCAACACACTTTCGGCAAACCCCGGCATCTTCGCCTGCGGCCACCGCCGCAGGCTTTGCGGGTCGC > 2:525968/1‑208 GTTAACCCGCGCCTACACATTGATGGATGGACACCACCTGCCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCCTCAAGGCTTGCGCGTTGCCATGTGCCCCAAATAGGCCAACAGCGCATCCAGTTCCTGTTCACTCAACACACTTTCGGCAAACCCCGGCATCTTCGCCTGCGGCCACCGCCGCAGGCTTTGCGGGTCGCGTATCAACTTCCGTAAATAAACCGGCTGAAAA > 1:575429/1‑235 TAACCCGCGCCTACACATTGATGGATGGACACCACCTGCCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCCTCAAGGCTTGCGCGTTGCCATGTGCCCCAAATAGGCCAACAGCGCATCCAGTTCCTGTTCACTCAACACACTTTCGGCAAACCCCGGCATCTTCGCCTGCGGCCACCGCCGCAGGCTTTGCGGGTCGCGTATCAACTTGCGTAAATAAACCGGCTGAAAATA > 1:404659/1‑235 TAACCCGCGCCTACACATTGATGGATGGACACCACCTGCCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCCTCAAGGCTTGCGCGTTGCCATGTGCCCCAAATAGGCCAACAGCGCATCCAGTTCCTGTTCACTCAACACACTTTCGGCAAACCCCGGCATCTTCGCCTGCGGCCACCGCCGCAGGCTTTGCGGGTCGCGTATCAACTTGCGTAAATAAACC < 2:707445/224‑1 CCGCGCCTACACATTGATGGATGGACACCACCTGCCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCCTCAAGGCTTGCGCGTTGCCATGTGCCCCAAATAGGCCAACAGCGCATCCAGTTCCTGATCACTCAACACACTTTCGGCAAACCCCGGCATCTTCGCCTGCGG < 1:681460/171‑1 GCGCCTACACATTGATGGATGGACACCACCTGCCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCCTCAAGGCTTGCGCGTTGCCATGTGCCCCAAATAGGCCAACAGCGCATCCAGTTCCTGTTCACTCAACACACTTTCGGCAAACCCCGGCATCTTCGCCTGCGGCCACCGCCGCAGGCTTTGCGG < 2:399918/190‑1 CGAGTATTTTCAGCCGGTTTATTTACGCAAGTTGATACGCGACCCGCAAAGCCTGCGGCGGTGGCCGCAGGCGAAGATGCCGGGGTTTGCCGAAAGTGTGTTGAGTGAACAGGAACTGGATGCGCTGTTGGCCTATTTGGGGCACATGGCAACGCGCAAGCCTTGAGGGCCTATTCGCGGGTGAACCCGCTCCTACAACGGCAGGTGGTGTCCATCCATCAATGTGTAGGCGCGGGTTAACCCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AE015451/2064362‑2064117‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcgggttaacccgcgCCTACACATTGATGGATGGACACCACCTGCCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCCTCAAGGCTTGCGCGTTGCCATGTGCCCCAAATAGGCCAACAGCGCATCCAGTTCCTGTTCACTCAACACACTTTCGGCAAACCCCGGCATCTTCGCCTGCGGCCACCGCCGCAGGCTTTGCGGGTCGCGTATCAACTTGCGTAAATAAACCGGCTGAAAATA > AE015451/2064133‑2064358 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |