New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AE015451 2064117 =47 (0.820)3 (0.060) 3/310 NT 6.8% intergenic (+21/+80) PP_1840/PP_1841 conserved protein of unknown function/Cytochrome c family protein
?AE015451 2064133 = 40 (0.770)intergenic (+37/+64) PP_1840/PP_1841 conserved protein of unknown function/Cytochrome c family protein

CGTGCAGCCGGGCAGTTTCGCGGGGAATCGCTCAATGCCCAGGTGAAGGAGCTGGGCGACGGGGCCTGGCACCTGGAACTGAGCAAGGTCATGTACGCCACCCATGGCGGGATTGGCGACTTTGAAGAGGCCTTCGAGCAGTTGGTGACACCGTATGGGGGTGAGGTGGAAGGGTGGGGCGTCAAGCAAGAGCGGCTCACGGCCTGACAGTTTTGTGTTGGCCCGTTCGCGGGTTAACCCGCGCCTACACATTGATGGATGGACACCACCTGCCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCCTCAAGGCTTGCGCGTTGCCATGTGCCCCAAATAGGCCAACAGCGCATCCAGTTCCTGTTCACTCAACACACTTTCGGCAAACCCCGGCATCTTCGCCTGCGGCCACCGCCGCAGGCTTTGCGGGTCGCGTATCAACTTGCGTAAAT  >  AE015451/2063890‑2064342
                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                 
cgtGCAGCCGGGCAGTTTCGCGGGGAATCGCTCAATGCCCAGGTGAAGGAGCTGGGCGACGGGGCCTGGCACCTGGAACTGAGCAAGGTCATGTACGCCACCCATGGCGGGATTGGCGACTTTGAAGAGGCCTTCGAGCAGTTGGTGACACCGTATGGGGGTGAGGTGGAAGGGTGGGGCGTCAAGCAAGAGCGGCTCACGGCCTGACAGTTTTGTGTTGGCCCGTTCGCGGGt                                                                                                                                                                                                                             >  2:586493/1‑234 (MQ=255)
cgtGCAGCCGGGCAGTTTCGCGGGGAATCGCTCAATGCCCAGGTGAAGGAGCTGGGCGACGGGGCCTGGCACCTGGAACTGAGCAAGGTCATGTACGCCACCCATGGCGGGATTGGCGACTTTGAAGAGGCCTTCGAGCAGTTGGTGACACCGTATGGGGGTGAGGTGGAAGGGTGGGGCGTCAAGCAAGAGCGGCTCACGGCCTGACAGTTTTGTGTTGGCCCGTTCGCGGGTTa                                                                                                                                                                                                                           >  1:760179/1‑236 (MQ=255)
cgtGCAGCCGGGCAGTTTCGCGGGGAATCGCTCAATGCCCAGGTGAAGGAGCTGGGCGACGGGGCCTGGCACCTGGAACTGAGCAAGGTCATGTACGCCACCCATGGCGGGATTGGCGACTTTGAAGAGGCCTTCGAGCAGTTGGTGACACCGTATGGGGGTGAGGTGGAAGGGTGGGGCGTCAAGCAAGAGCGGCTCACGGCCTGACAGTTTTGTGTTGGCCCGTTCGCGGGTTa                                                                                                                                                                                                                           >  1:769185/1‑236 (MQ=255)
 tattttcagccggtttatttacgcaagttgatacgcgacccgcaaagcctgcggcggtggccgcaggcgaagatgccggggtttgccgaaagtgtgttgagtgaacaggaactggatgcgctgttggcctatttggggcacatggcaacgcgcaagccttgagggcctattcgcgggtgaacccgctcctacaacggcaggtggtgtccatccatcaatgtgtaggCGCGGGTTa                                                                                                                                                                                                                           >  1:404659‑M1/227‑235 (MQ=255)
   ttttcagccggtttatttacggaagttgatacgcgacccgcaaagcctgcggcggtggccgcaggcgaagatgccggggtttgccgaaagtgtgttgagtgaacaggaactggatgcgctgttggcctatttggggcacatggcaacgcgcaagccttgagggcctattcgcgggtgaacccgctcctacaacggcaggtggtgtccatccatcaatgtgtaggCGCGGGTTAAc                                                                                                                                                                                                                         >  1:575429‑M1/225‑235 (MQ=255)
   gCAGCCGGGCAGTTTCGCGGGGAATCGCTCAATGCCCAGGTGAAGGAGCTGGGCGACGGGGCCTGGCACCTGGAACTGAGCAAGGTCATGTACGCCACCCATGGCGGGATTGGCGACTTTGAAGAGGCCTTCGAGCAGTTGGTGACACCGTATGGGGGTGAGGTGGAAGGGTGGGGCGTCAAGCAAGAGCGGCTCACGGCCTGACAGTTTTGTGTTGGCCCGTTCGCGGGTTAAc                                                                                                                                                                                                                         <  2:884950/235‑1 (MQ=255)
           cggtttatttacgcaagttgatacgcgacccgcaaagcctgcggcggtggccgcaggcgaagatgccggggtttgccgaaagtgtgttgagtgaacaggaactggatgcgctgttggcctatttggggcacatggcaacgcgcaagccttgagggcctattcgcgggtgaacccgctcctacaacggcaggtggtgtccatccatcaatgtgtaggCGCGGGTTAACCCGCGcc                                                                                                                                                                                                                  >  1:316800‑M1/217‑234 (MQ=255)
            ggtttatttacgcaagttgatacgcgacccgcaaagcctgcggcggtggccgcaggcgaagatgccggggtttgccgaaagtgtgttgagtgaacaggaactggatgcgctgttggcctatttggggcacatggcaacgcgcaagccttgagggcctattcgcgggtgaacccgctcctacaacggcaggtggtgtccatccatcaatgtgtaggCGCGGGTTa                                                                                                                                                                                                                           <  2:707445‑M1/9‑1 (MQ=255)
                     ggggAATCGCTCAATGCCCAGGTGAAGGAGCTGGGCGACGGGGCCTGGCACCTGGAACTGAGCAAGGTCATGTACGCCACCCATGGCGGGATTGGCGACTTTGAAGAGGCCTTCGAGCAGTTGGTGACACCGTATGGGGGTGAGGTGGAAGGGTGGGGCGTCAAGCAAGAGCGGCTCACGGCCTGACAGTTTTGTGTTGGCCCGTTCGCGGGTTAACCCGCGCCTACACATTgat                                                                                                                                                                                                       <  2:769182/235‑1 (MQ=255)
                                 aaTGCCCAGGTGAAGGAGCTGGGCGACGGGGCCTGGCACCTGGAACTGAGCAAGGTCATGTACGCCACCCATGGCGGGATTGGCGACTTTGAAGAGGCCTTCGAGCAGTTGGTGACACCGTATGGGGGTGAGGTGGAAGGGTGGGGCGTCAAGCAAGAGCGGCTCACGGCCTGACAGTTTTGTGTTGGCCCGTTCGCGGGTTAACCCGCGCCTACACATTGatggatgg                                                                                                                                                                                                 <  2:760176/229‑1 (MQ=255)
                                   gcgacccgcaaagcctgcggcggtggccgcaggcgaagatgccggggtttgccgaaagtgtgttgagtgaacaggaactggatgcgctgttggcctatttggggcacatggcaacgcgcaagccttgagggcctattcgcgggtgaacccgctcctacaacggcaggtggtgtccatccatcaatgtgtaggCGCGGGTTAACCcgcg                                                                                                                                                                                                                    >  2:525968‑M1/193‑208 (MQ=255)
                                        ccgcaaagcctgcggcggtggccgcaggcgaagatgccggggtttgccgaaagtgtgttgagtgaacaggaactggatgcgctgttggcctatttggggcacatggcaacgcgcaagccttgagggcctattcgcgggtgaacccgctcctacaacggcaggtggtgtccatccatcaatgtgtaggcgc                                                                                                                                                                                                                                 <  2:399918‑M1/3‑1 (MQ=255)
                                           tGAAGGAGCTGGGCGACGGGGCCTGGCACCTGGAACTGAGCAAGGTCATGTACGCCACCCATGGCGGGATTGGCGACTTTGAAGAGGCCTTCGAGCAGTTGGTGACACCGTATGGGGGTGAGGTGGAAGGGTGGGGCGTCAAGCAAGAGCGGCTCACGGCCTGACAGTTTTGTGTTGGCCCGTTCGCGGGTTAACCCGCGCCTACACATTGATGGATGGACACCACCTGCCGTTg                                                                                                                                                                                 >  1:457650/1‑235 (MQ=255)
                                            gAAGGAGCTGGGCGACGGGGCCTGGCACCTGGAACTGAGCAAGGTCATGTACGCCACCCATGGCGGGATTGGCGACTTTGAAGAGGCCTTCGAGCAGTTGGTGACACCGTATGGGGGTGAGGTGGAAGGGTGGGGCGTCAAGCAAGAGCGGCTCACGGCCTGACAGTTTTGTGTTGGCCCGTTCGCGGGTTAACCCGCGCCTac                                                                                                                                                                                                               >  1:915186/1‑204 (MQ=255)
                                                     gggCGACGGGGCCTGGCACCTGGAACGGAGCAAGGTCATGTACGCCACCCATGGCGGGATTGGCGACTTTGAAGAGGCCTTCGAGCAGTTGGTGACACCGTATGGGGGTGAGGTGGAAGGGTGGGGCGTCAAGCAAGAGCGGCTCACGGCCTGACAGTTTTGTGTTGGCCCGTTCGCGGGTTAACCCGCGCCTACACATTGATGGATGGACACCACCTGCCGTTGTAGGAGCgg                                                                                                                                                                        <  2:473709/234‑1 (MQ=255)
                                                       gCGACGGGGCCTGGCACCTGGAACTGAGCAAGGTCATGTACGCCACCCATGGCGGGATTGGCGACTTTGAAGAGGCCTTCGAGCAGTTGGTGACACCGTATGGGGGTGAGGTGGAAGGGTGGGGCGTCAAGCAAGAGCGGCTCACGGCCTGACAGTTTTGTGTTGGCCCGTTCGCGGGTTAACCCGCGCCTACACATTgatggatg                                                                                                                                                                                                  <  2:616579/206‑1 (MQ=255)
                                                        cGACGGGGCCTGGCACCTGGAACTGAGCAAGGTCATGTACGCCACCCATGGCGGGATTGGCGACTTTGAAGAGGCCTTCGAGCAGTTGGTGACACCGTATGGGGGTGAGGTGGAAGGGTGGGGCGTCAAGCAAGAGCGGCTCACGGCCTGACAGTTTTGTGTTGGCCCGTTCGCGGGTTAACCCGCGCCTACACATTGATGGATGGACACCACCTGCCGTTGTAGGAGCGGGTTCa                                                                                                                                                                   >  1:691360/1‑236 (MQ=255)
                                                             ccgcaggcgaagatgccggggtttgccgaaagtgtgttgagtgatcaggaactggatgcgctgttggcctatttggggcacatggcaacgcgcaagccttgagggcctattcgcgggtgaacccgctcctacaacggcaggtggtgtccatccatcaatgtgtaggCGCgg                                                                                                                                                                                                                               <  1:681460‑M1/5‑1 (MQ=255)
                                                                  tGGCACCTGGAACTGAGCAAGGTCATGTACGCCACCCATGGCGGGATTGGCGACTTTGAAGAGGCCTTCGAGCAGTTGGTGACACCGTATGGGGGTGAGGTGGAAGGGTGGGGCGTCAAGCAAGAGCGGCTCACGGCCTGACAGTTTTGTGTTGGCCCGTTCGCGGGTTAACCcg                                                                                                                                                                                                                      <  1:800988/175‑1 (MQ=255)
                                                                    gCACCTGGAACTGAGCAAGGTCATGTACGCCACCCATGGCGGGATTGGCGACTTTGAAGAGGCCTTCGAGCAGTTGGTGACACCGTATGGGGGTGAGGTGGAAGGGTGGGGCGTCAAGCAAGAGCGGCTCACGGCCTGACAGTTTTGTGTTGGCCCGTTCGCGGGTTAACCCGCGCCTACACATTGATGGATGGACACCACCTGCCGTTGTa                                                                                                                                                                               <  1:315506/212‑1 (MQ=255)
                                                                                   cAAGGTCATGTACGCCACCCATGGCGGGATTGGCGACTTTGAAGAGGCCTTCGAGCAGTTGGTGACACCGTATGGGGGTGAGGTGGAAGGGTGGGGCGTCAAGCAAGAGCGGCTCACGGCCTGACAGTTTTGTGTTGGCCCGTTCGCGGGTTAACCCGCGCCTACACATTGATGGATGGACACCACCTGCCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCCTCAAGGCt                                                                                                                                            <  2:457647/232‑1 (MQ=255)
                                                                                   cAAGGTCATGTACGCCACCCATGGCGGGATTGGCGACTTTGAAGAGGCCTTCGAGCAGTTGGTGACACCGTATGGGGGTGAGGTGGAAGGGTGGGGCGTCAAGCAAGAGCGGCTCACGGCCTGACAGTTTTGTGTTGGCCCGTTCGCGGGTTAACCCGCGCCTACACATTGATGGATGGACACCACCTGCCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCCTCAAGGCTTgc                                                                                                                                         <  1:959333/235‑1 (MQ=255)
                                                                                       gTCATGTACGCCACCCATGGGGGGATTGGCGGCTTGGAAGAGGCCTTCGAGCAGTTGGTGACACCGTATGGGGGTGAGGTGGAAGGGTGGGGCGTCAAGCAAGAGCGGCTCACGGCCTGACAGTTTTGTGTTGGCCCGTTCGCGGGTTAACCCGCGCCTACACATTGATGGATGGACACCACCTGCCGTTGTAGGAGCGGGTTCACCcgc                                                                                                                                                              <  1:171817/210‑1 (MQ=255)
                                                                                         cATGTACGCCACCCATGGCGGGATTGGCGACTTTGAAGAGGCCTTCGAGCAGTTGGTGACACCGTATGGGGGTGAGGTGGAAGGGTGGGGCGTCAAGCAAGAGCGGCTCACGGCCTGACAGTTTTGTGTTGGCCCGTTCGCGGGTTAACCCGCGCCTACACATTGATGGATGGACACCACCTGCCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCCTCAAGGCTTGCGCGTTGc                                                                                                                                  <  1:1076704/236‑1 (MQ=255)
                                                                                           tGTACGCCACCCATGGCGGGATTGGCGACTTTGAAGAGGCCTTCGAGCAGTTGGTGACACCGTATGGGGGTGAGGTGGAAGGGTGGGGCGTCAAGCAAGAGCGGCTCACGGCCTGACAGTTTTGTGTTGGCCCGTTCGCGGGTTAACCCGCGCCTACACATTGATGGATGGACACCACCTGCCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCCTCAAGGCTTGCGCGTTGcc                                                                                                                                 <  1:636530/235‑1 (MQ=255)
                                                                                           agtgtgttgagtgaacaggaacttgatgcgctgttggccgatttggggcacatggcaacgcgcaagccttgagggcctattcgcgggtgaacccgctcctacaacggcaggtggtgtccatccatcaatgtgtaggCGCGGGTTAACCCgcgc                                                                                                                                                                                                                   >  2:846590‑M1/137‑153 (MQ=255)
                                                                                                     ccATGGCGGGATTGGCGACTTTGAAGAGGCCTTCGAGCAGTTGGTGACACCGTATGGGGGTGAGGTGGAAGGGTGGGGCGTCAAGCAAGAGCGGCTCACGGCCTGACAGTTTTGTGTTGGCCCGTTCGCGGGTTAACCCGCGCCTACACATTGATGGATGGACACCACCTGCCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCCTCAAGGCTTGCGCGTTGCCAt                                                                                                                               >  1:570633/1‑227 (MQ=255)
                                                                                                       aTGGCGGGATTGGCGACTTTGAAGAGGCCTTCGAGCAGTTGGTGACACCGTATGGGGGTGAGGTGGAAGGGTGGGGCGTCAAGCAAGAGCGGCTCACGGCCTGACAGTTTTGTGTTGGCCCGTTCGCGGGTTa                                                                                                                                                                                                                           >  2:778551/1‑133 (MQ=255)
                                                                                                             ggATTGGCGACTTTGAAGAGGCCTTCGAGCAGTTGGTGACACCGTATGGGGGTGAGGTGGAAGGGTGGGGCGTCAAGCAAGAGCGGCTCACGGCCTGACAGTTTTGTGTTGGCCCGTTCGCGGGTTAACCCGCGCCTACACATTGATGGATGGACACCACCTGCCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCCTCAAGGCTTGCGCGTTGCCATGTGCCCCAAATAGGcc                                                                                                               <  1:966294/235‑1 (MQ=255)
                                                                                                               actggatgcgctgtgggcctatttggggcacatggcaacgcgcaagccttgagggcctattcgcgggtgaacccgctcctacaacggcaggtggtgtccatccatcaatgtgtaggCGCGGGTTAACCCGCGCCTACACATTGATGGATGGACACCACCTGCCGt                                                                                                                                                                                   >  2:974774‑M1/117‑165 (MQ=255)
                                                                                                                 tGGCGACTTTGAAGAGGCCTTCGAGCAGTTGGTGACACCGTATGGGGGGGAGGTGGAAGGGTGGGGCGTCAAGCAAGAGCGGCTCACGGCCTGACAGTTTTGTGTTGGCCCGGTCGCGGGTTAACCCGCGCCTACACATTGATGGATGGACACCACCTGCCGTTGTAGGAGCGGGGTCACCCGCGAATAGGCCCTCAAGGCTTGCGCGGTGCCAt                                                                                                                               >  1:241858/1‑215 (MQ=255)
                                                                                                                       cTTTGAAGAGGCCTTCGAGCAGTTGGTGACACCGTATGGGGGCGAGGTGGAAGGGTGGGGCGTCAAGCAAGAGCGGCTCACGGCCTGACAGTTTTGTGTTGGCCCGTTCGCGGGTTAACCCGCGCCTACACATTGATGGATGGACACCACCTGCCGTTGTAGGAGCGGGTTCACCCGCGa                                                                                                                                                            <  2:605310/180‑1 (MQ=255)
                                                                                                                         ttGAAGAGGCCTTCGGGCAGTTGGTGACACCGTATGGGGGTGAGGTGGAAGGGTGGGGCGTCAAGCAAGAGCGGCTCACGGCCTGACAGTTTTGTGTTGGCCCGTTCGCGGGTTAACCCGCGCCTACACATTGATGGATGGACACCACCTGCCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCCTCAAGGCTTGCGCGTTGCCATGTGcccc                                                                                                                        <  2:494186/214‑1 (MQ=255)
                                                                                                                         ttGAAGAGGCCTTCGAGCAGTTGGTGACACCGTATGGGGGTGAGGTGGAAGGGTGGGGCGTCAAGCAAGAGCGGCTCACGGCCTGACAGTTTTGTGTTGGCCCGTTCGCGGGTTAACCCGCGCCTACACATTGATGGATGGACACCACCTGCCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCCTCAAGGCTTGCGCGTTGc                                                                                                                                  <  1:450586/204‑1 (MQ=255)
                                                                                                                                  ccTTCGAGCAGTTGGTGACACCGTATGGGGGTGAGGTGGAAGGGTGGGGCGTCAAGCAAGAGCGGCTCACGGCCTGACAGTTTTGTGTTGGCCCGTTCGCGGGTTAACCCGCGCCTACACATTGATGGATGGACACCACCTGCCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCCTCAAGGCTTGCGCGTTGCCATGTGCCCCAAATAGGCCAACAGCGCATCCAGTTCCTg                                                                                           <  2:942426/234‑1 (MQ=255)
                                                                                                                                    ttCGAGCAGTTGGTGACACCGTATGGGGGTGAGGTGGAAGGGTGGGGCGTCAAGCAAGAGCGGCTCACGGCCTGACAGTTTTGTGTTGGCCCGTTCGCGGGTTAACCCGCGCCTACACATTGATGGATGGACACCACCTGCCGTTGTAGGAGCGGGTTCACCCGCGAATa                                                                                                                                                         >  1:90256/1‑170 (MQ=255)
                                                                                                                                         ggcacatggcaacgcgcaagccttgagggcctattcgcgggtgaacccgctgctacaacggaaggtggtgtccatccatcaatgtggaggGGCGGGttaacgcgcggacg                                                                                                                                                                                                                <  2:991674‑M1/20‑5 (MQ=255)
                                                                                                                                                  gACACCGTATGGGGGTGAGGTGGAAGGGTGGGGCGTCAAGCAAGAGCGGCTCACGGCCTGACAGTTTTGTGTTGGCCCGTTCGCGGGTTAACCCGCGCCTACACATTGATGGATGGACACCACCTGCCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCCTCAAGGCTTGCGCGTTGCCATGTGCCCCAAATAGGCCAACAg                                                                                                          >  1:5618/1‑203 (MQ=255)
                                                                                                                                                     acCGTATGGGGGTGAGGTGGAAGGGTGGGGCGTCAAGCAAGAGCGGCTCACGGCCTGACAGTTTTGTGTTGGCCCGTTCGCGGGTTAACCCGCGCCTACACATTGATGGATGGACACCACCTGCCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCCTCAAGGCTTGCGCGTTGCCATGTGCCCCAAATAGGCCAACAGCGCATCCAGTTCCTGTTCACTCAACACACTTTCg                                                                        <  2:691357/234‑1 (MQ=255)
                                                                                                                                                          aTGGGGGTGAGGTGGAAGGGTGGGGCGTCAAGCAAGAGCGGCTCACGGCCTGACAGTTTTGTGTTGGCCCGTTCGCGGGTTAACCCGCGCCTACACATTGATGGATGGACACCACCTGCCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCCTCAAGGCTTGCGCGTTGCCATGTGCCCCAAATAGGCCAACAGCGCATCCAGTTCCTGTTCACt                                                                                     >  1:767462/1‑216 (MQ=255)
                                                                                                                                                             ggggtggggtGGAAGGGTGGGGCGTCAAGGAAGAGCGGCTCACGGCCTGACAGTTGTGTGTTGGCCCGTTCGCGGGTTAACCCGCGCCTACACATTGATGGATGGACACCACCTGCCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCCTCAAGGCTTGCGCGtt                                                                                                                                    <  2:30596/166‑1 (MQ=255)
                                                                                                                                                             ggggTGAGGTGGAAGGGTGGGGCGTCAAGCAAGAGCGGCTCACGGCCTGACAGTTTTGTGTTGGCCCGTTCGCGGGTTAACCCGCGCCTACACATTGATGGATGGACACCACCTGCCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCCTCAAGGCTTGCGCGTTGCCATGTGCCCCAAATAGGCCAACAg                                                                                                          >  2:1047202/1‑192 (MQ=255)
                                                                                                                                                                 tGAGGTGGAAGGGTGGGGCGTCAAGCAAGAGCGGCTCACGGCCTGACAGTTTTGTGTTGGCCCGTTCGCGGGTTAACCCGCGCCTACACATTGATGGATGGACACCACCTGCCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCCTCAAGGCTTGCGCGTTGCCATGTGCCCCAAATAGGCCAACAGCGCATCCAGTTCCTGTTCACTCAACACACTTTCGGCAAAcc                                                                 <  2:569124/229‑1 (MQ=255)
                                                                                                                                                                    ggTGGAAGGGTGGGGCGTCAAGCAAGAGCGGCTCACGGCCTGACAGTTTTGTGTTGGCCCGTTCGCGGGTTAACCCGCGCCTACACATTGATGGATGGACACCACCTGCCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCCTCAAGGCTTGCGCGTTGCCATGTGCCCCAAATAGGCCaa                                                                                                             >  1:54460/1‑182 (MQ=255)
                                                                                                                                                                      tGGAAGGGTGGGGCGTCAAGCAAGAGCGGCTCACGGCCTGACAGTTTTGTGTTGGCCCGTTCGCGGGTTAACCCGCGCCTACACATTGATGGATGGACACCACCTGCCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCCTCAAGGc                                                                                                                                             >  2:8079/1‑148 (MQ=255)
                                                                                                                                                                      tGGAAGGGTGGGGCGTCAAGCAAGAGCGGCTCACGGCCTGACAGTTTTGTGTTGGCCCGTTCGCGGGTTAACCCGCGCCTACACATTGATGGATGGACACCACCTGCCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCCTCAAGGCTTGCGCGTTGCCATGTGCCCCAAATAGGCCAACAGCGCATCCAGTTCCTGTTCACTCAACACACTTTCGGCAAACCCCGGCATCTTCg                                                     >  1:474121/1‑236 (MQ=255)
                                                                                                                                                                         aaGGGTGGGGCGTCAAGCAAGAGCGGCTCACGGCCTGACAGTTTTGTGTTGGCCCGTTCGCGGGTTAACCCGCGCCTACACATTGATGGATGGACACCACCTGCCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCCTCAAGGCTTGCGCGTTGCCATGTGCCCCAAATAGGCCAACAGCGCATc                                                                                                    <  1:519626/186‑1 (MQ=255)
                                                                                                                                                                                  gCGTCAAGCAAGAGCGGCTCACGGCCTGACAGTTTTGTGTTGGCCCGTTCGCGGGTTAACCCGCGCCTACACATTGATGGATGGACACCACCTGCCGTTGTAGGAGCGGGTTCACCCGCGAATAGGccc                                                                                                                                                    >  2:1082592/1‑129 (MQ=255)
                                                                                                                                                                                  gCGTCAAGCAAGAGCGGCTCACGGCCTGACAGTTTTGTGTTGGCCCGTTCGCGGGTTAACCCGCGCCTACACATTGATGGATGGACACCACCTGCCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCCTCAAGGCTTGCGCGTTGCCATGTGCCCCAAATAGGCCAACAGCGCATCCAGTTCCTGTTCACTCAACACACTTTCGGCAAACCCCGGCATCTTCGCCTGCGGCCAc                                          >  1:521145/1‑235 (MQ=255)
                                                                                                                                                                                              tacaacggcaggtggtgtccatccatcaatgtgtaggCGCGGGTTAACCCGCGCCTACACATTGATGGATGGACACCACCTGCCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCCTCAAGGCTTGCGCGTTGCCATGTGCCCCAAATAGGCCAACAGCGCATCCAGTTCCTGtt                                                                                         <  1:707705‑M1/139‑1 (MQ=255)
                                                                                                                                                                                                cGGCTCACGGCCTGACAGTTTTGTGTTGGCCCGTTCGCGGGTTAACCCGCGCCTACACATTGATGGATGGACACCACCTGCCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCCTCAAGGCTTGCGCGTTGCCATGTGCCCCAAATAGGCCAACAGCGCATCCAGTTCCTGTTCACTCAACACACTTTc                                                                         <  1:84876/190‑1 (MQ=255)
                                                                                                                                                                                                  gCTCACGGCCTGACAGTTTTGTGTTGGCCCGTTCGCGGGTTAACCCGCGCCTACACATTGATGGATGGACACCACCTGCCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCCTCAAGGCTTGCGCGTTGCCATGTGCCCCAAATAGGCCAACAGCGCATCCAGTTCCTGTTCACTCAACACACTTTCGGCAAACCCCGGCATCTTCGCCTGCGGCCACCGCCGCAGGCTTTGCg                          <  1:887573/235‑1 (MQ=255)
                                                                                                                                                                                                   atCACGGCCTGACAGTTTTGTGTTGGCCCGTTCGCGGGTTAACCCGCGCCTACACATTGATGGATGGACACCACCTGCCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCCTCAAGGCTTGCGCGTTGCCATGTGCCCCAAATAGGCCAACAGCGCATCCAGTTCCTGTTCACTCAACACACTTTCGGCAAACCCCGGCATCTTCGCCTGCGGCCACCGCCGCAGGCTTTGCggg                        <  2:547314/235‑1 (MQ=255)
                                                                                                                                                                                                      ccGGCCTGACAGTTTTGTGTTGGCCCGTTCGCGGGTTAACCCGCGCCTACACATTGATGGATGGACACCACCTGCCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCCTCAAGGCTTGCGCGTTGCCATGTGCCCCAAATAGGCCAACAGCGCATCCAGTTCCTGTTCACTCAACACACTTTCGGCAAAcc                                                                 <  1:331109/191‑1 (MQ=255)
                                                                                                                                                                                                                ccatccatcaatgtgtaggCGCGGGTTAACCCGCGCCTACACATTGATGGATGGACACCACCTGCCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCCTCAAGGCTTGCGCGTTGCCATGTGCCCCAAATAGGCCAACAGCGCatcccg                                                                                                 <  1:139925‑M1/131‑3 (MQ=255)
                                                                                                                                                                                                                aGTTTTGTGTTGGCCCGTTCGCGGGTTAACCCGCGCCTACACATTGATGGATGGACACCACCTGCCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCCTCAAGGCTTGCGCGTTGCCATGTGCCCCAAATAGGccg                                                                                                              >  2:657921/1‑136 (MQ=255)
                                                                                                                                                                                                                       tgtTGGCCCGTTCGCGGGTTAACCCGCGCCTACACATTGATGGATGGACACCACCTGCCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCCTCAAGGCTTGCGCGTTGCCATGTGCCCCAAATAGGCCAACAGCGCATCCAGTTCCTGTTCACTCAACACACtt                                                                           >  2:186034/1‑165 (MQ=255)
                                                                                                                                                                                                                         ttGGCCCGGTCGCGGGTTAACCCGCGCCTACACATTGATGGATGGACACCACCTGCCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCCTCAAGGCTTGCGCGTTGCCATGTGCCCCAAATAGGCCAACGGCGCATCCAGTTCCTGTTCACTCAACACACTTTCGGCAAACCCCGGCATCTTCGCCTGCGGCCACCGCCGCAGGCTTTGCGGGTCGCGTATCAACTTGCGtaaat  <  1:561611/236‑1 (MQ=255)
                                                                                                                                                                                                                            gCCCGTTCGCGGGTTAACCCGCGCCTACACATTGATGGATGGACACCACCTGCCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCCTCAAGGCTTGCGCGTTGCCATGTGCCCCAAATAGGCCAACAGCGCATCCAGTTCCTGTTCACTCAACACACTTTCGGCAAACCCCGGCATCTTCGCCTGCGGCCACCGCCGCAGGCTTTGCgg                         <  2:949405/210‑1 (MQ=255)
                                                                                                                                                                                                                               cGTTCGCGGGTTAACCCGCGCCTACACATTGATGGATGGACACCACCTGCCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCCTTAAGGCTTGCTCGTTTCCATGTGCCCCAAATa                                                                                                                   >  2:899827/1‑117 (MQ=255)
                                                                                                                                                                                                                               cGTTCGCGGGTTAACCCGCGCCTACACATTGATGGATGGACACCACCTGCCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCCTCAAGGCTTGCGCGTTGCCATGTGCCCCAAATAGGCCAACAGCGCATCCAGTTCCTGTTCACTCAACACACTTTCGGCAAAca                                                                 >  1:182539/1‑166 (MQ=255)
                                                                                                                                                                                                                                 ttCGCGGGTTAACCCGCGCCTACACATTGATGGATGGACACCACCTGCCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCCTCAAGGCTTGCGCGTTGCCATGTGCCCCAAATAGGCCAACAGCGCATCCAGTTCCTGTTCACTCAACACACTTTCGGCAAACCCCGGCATCTTCGCCTg                                                 >  1:295265/1‑181 (MQ=255)
                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                 
CGTGCAGCCGGGCAGTTTCGCGGGGAATCGCTCAATGCCCAGGTGAAGGAGCTGGGCGACGGGGCCTGGCACCTGGAACTGAGCAAGGTCATGTACGCCACCCATGGCGGGATTGGCGACTTTGAAGAGGCCTTCGAGCAGTTGGTGACACCGTATGGGGGTGAGGTGGAAGGGTGGGGCGTCAAGCAAGAGCGGCTCACGGCCTGACAGTTTTGTGTTGGCCCGTTCGCGGGTTAACCCGCGCCTACACATTGATGGATGGACACCACCTGCCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCCTCAAGGCTTGCGCGTTGCCATGTGCCCCAAATAGGCCAACAGCGCATCCAGTTCCTGTTCACTCAACACACTTTCGGCAAACCCCGGCATCTTCGCCTGCGGCCACCGCCGCAGGCTTTGCGGGTCGCGTATCAACTTGCGTAAAT  >  AE015451/2063890‑2064342

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.