New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 2130405	64 (1.110)	4 (0.080)	4/310	NT	6.6%	coding (1794/2496 nt)	fimD	Type 1 pili subunit FimD
	?	AE015451	= 2130389	56 (1.070)					coding (1810/2496 nt)	fimD	Type 1 pili subunit FimD

TGGCCACGCCAGGGACTTCGATCAAGGCCGCGGTATCTCCCAGGTATCGGCCGAACTCCAGCCCGTCAGCATGCAGCAGCACCGCACCACTGGCATTCAATGACAGGCTGCGGTAGTTGTCGGCTTCGGTATAGCCAGCACTCACGCTGGCATAGGGGGCCTGATGGCCGAGCGACAGTGCCGCTGTCTTGCGGGCGTGTTCGTCACGGCTCAGGCTGGTGCTGTAGCTCAGCGCGCGCGCGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/2130161‑2130405 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcgcgcgcgcgctgAGCTACAGCACCAGCCTGAGCCGTGACGAACACGCCCGCAAGACAGCGGCACTGTCGCTCGGCCATCAGGCCCCCTATGCCAGCGTGAGTGCTGGCTATACCGAAGCCGACAACTACCGCAGCCTGTCATTGAATGCCAGTGGTGCGGTGCTGCTGCATGCTGACGGGCTGGAGTTCGGCCGATACCTGGGAGATACCGCGGCCTTGATCGAAGTCCCT  <  AE015451/2130389‑2130171                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  TGGCCACGCCAGGGACTTCGATCAAGGCCGCGGTATCTCCCAGGTATCGGCCGAACTCCAGCCCGTCAGCATGCAGCAGCACCGCACCACTGGCATTCAATGACAGGCTGCGGTAGTTGTCGGCTTCGGTATAGCCAGCACTCACGCTGGCATAGGGGGCCTGATGGCCGAGCGACAGTGCCGCTGTCTTGCGGGCGTGTTCGTCACGGCTCAGGCTGGTGCTGTAGCTCAGCGC                                                                                                                                                                                                                                       >  1:501347/1‑235                                                                                           TGGCATTCAAGGACAGGCTGCGGTAGTTGTCGGCTTCGGTATAGCCAGCACTCACGCTGGCATAGGGGGCCTGATGGCCGAGCGACAGTGCCGCTGTCTTGCGGGCGTGTTCGTCACGGCTCAGGCTGGTGCTGTAGCTCAGCGCGCGCGCGCTGAGCTACAGCACCAGCCTGAGCCGTGACGAACACGCCCGCAAGACAGCGGCACTGTC                                                                                                                                                                     <  1:541765/211‑1                                                                                                                                              TCACGCTGGCGTAGGGGGCCTGATGGCCGAGCGACAGTGCCGCTGTCTTGCGGGCGTGTTCGTCACGGCTCAGGCTGGTGCTGTAGCTCAGCGCGCGCGCGCTGAGCTACAGCACCAGCCTGA                                                                                                                                                                                                          <  2:358919/123‑1                                                                                                                                                                                                          CGTCACGGCTCAGGCTGGTGCTGTAGCTCAGCGCGCGCGCGCTGAGCTACAGCACCAGCCTGAGCCGTGACGAACACGCCCGCAAGACAGCGGCACT                                                                                                                                                                        >  1:910026/1‑97                                                                                                                                                                                                                          GGTGCTGTAGCTCAGCGCGCGCGCGCTGAGCTACAGCACCAGCCTGAGCCGTGACGAACACGCCCGCAAGACAGCGGCACTGTCGCTCGGCCATCAGGCCCCCTATGCCAGCGTGAGTGCTGGCTATACCGAAGCCGACAACTACCGCAGCCTGTCATTGAATGCCAGTGGTGCGGTGCTGCTGCATGCTGACGGGCTGGAGTTCGGCCGATACCTGGGAGATACCGCGGCCTTGA             >  1:450936/1‑236                                                                                                                                                                                                                                       AGCGCGCGCGCGCTGAGCTACAG                                                                                                                                                                                                                     <  2:181370/23‑1                                                                                                                                                                                                                                                 CGCTGAGCTACAGCACCAGCCTGAGCCGTGACGAACACGCCCGCAAGACAGCGGCACTGTCGCTCGGCCATCAGGCCCCCTATGCCAGCGTGAGTGCTGGCTATACCGAAGCCGACAACTACCGCAGCCTGTCATTGAATGCCAGTGGTGCGGTGCTGCTGCATGCTGACGGGCTGGAGTTCGGCCGATACCTGGGAGATACCGCGGCCTTGATCGAAGTCCCT  <  2:450933/224‑1                                                                                                                                                                                                                                                   cgGAGCTACAGCACCAGCCTGAGCCGTGACGAACACGCCCGCAAGACAGCGGCACTGTCGCTCGGCCATCAGGCCCCCTAT                                                                                                                                               <  2:12067/79‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  TGGCCACGCCAGGGACTTCGATCAAGGCCGCGGTATCTCCCAGGTATCGGCCGAACTCCAGCCCGTCAGCATGCAGCAGCACCGCACCACTGGCATTCAATGACAGGCTGCGGTAGTTGTCGGCTTCGGTATAGCCAGCACTCACGCTGGCATAGGGGGCCTGATGGCCGAGCGACAGTGCCGCTGTCTTGCGGGCGTGTTCGTCACGGCTCAGGCTGGTGCTGTAGCTCAGCGCGCGCGCGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/2130161‑2130405 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcgcgcgcgcgctgAGCTACAGCACCAGCCTGAGCCGTGACGAACACGCCCGCAAGACAGCGGCACTGTCGCTCGGCCATCAGGCCCCCTATGCCAGCGTGAGTGCTGGCTATACCGAAGCCGACAACTACCGCAGCCTGTCATTGAATGCCAGTGGTGCGGTGCTGCTGCATGCTGACGGGCTGGAGTTCGGCCGATACCTGGGAGATACCGCGGCCTTGATCGAAGTCCCT  <  AE015451/2130389‑2130171

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.