New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	2320513 =	50 (0.870)	3 (0.050)	3/326	NT	6.0%	coding (728/945 nt)	PP_2041	Transcriptional regulator, LysR family
	?	AE015451	2320540 =	47 (0.860)					coding (701/945 nt)	PP_2041	Transcriptional regulator, LysR family

AGACCTGTATTGGGTCGGCCTGCCTGGGCACGGCCCTGACGAGTCGCCCATCACCTTGGCTGAAGCCGCAGCGAGCCGCCTGGTAATGCCACCCCGTAGCCTGCACTTGCGCAGGCGCATCGAGCAGGCTGCCATGGAAACCGGTGTGACACTGGACTCCAGCTACGAACAGCAGTCGGCCCCCGGTATCACCAGCCTGGTCCGTGCTGGCCTGGCGGCCACCATCAGCAACTGGCCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/2320752‑2320513 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggccgccAGGCCAGCACGGACCAGGCTGGTGATACCGGGGGCCGACTGCTGTTCGTAGCTGGAGTCCAGTGTCACACCGGTTTCCATGGCAGCCTGCTCGATGCGCCTGCGCAAGTGCAGGCTACGGGGTGGCATTACCAGGCGGCTCGCTGCGGCTTCAGCCAAGGTGATGGGCGACTCGTCAGGGCCGTGCCCAGGCAGGCCGACCCAATACAGGTCTTCGGAAAACACGGGCTCGGCGA  >  AE015451/2320540‑2320774                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             AGACCTGTATCGGGTCGGCCTGCCTGGGCACGGCCCTGACGAGTCGCCCATCACCTTGGCTGAAGCCGCAGCGAGCCGCCTGGTAATGCCACCCCGTAGCCTGCACTTGCGCAGGCGCATCGAGCAGGCTGCCATGGAAACCGGTGTGACACTGGACTCCAGCTACGAACAGCAGTCGGCCCCCGGTATCACCAGCCTGGTCCGTGCTGGCCTGGCGGCCACCATCAGCAACTGGC                                                                                                                                                                                                                                                 <  1:327095/236‑1                     TGCCTGGGCACGGCCCTGACGAGTCGCCCATCACCTTGGCTGAAGCCGCAGCGAGCCGCCTGGTAATGCCACCCCGTAGCCTGCACTTGCGCAGGCGCATCGAGCAGGCTGCCATGGAAACCGGTGTGACACTGGACTCCAGCTACGAACAGCAGTCGGCCCCCGGTATCACCAGCCTGGTCCGTGCTGGCCTGGCGGCCACCATCAGCAACTGGCCGCC                                                                                                                                                                                                                                             <  1:1010341/220‑1                     TGCCTGGGCACGGCCCTGACGAGTCGCCCATCACCTTGGCTGAAGCCGCAGCGAGCCGCCTGGTAATGCCACCCCGTAGCCTGCACTTGCGCAGGCGCATCGAGCAGGCTGCCATGGAAACCGGTGTGACACTGGACTCCAGCTACGAACAGCAGTCGGCCCCCGGTATCACCAGCCTGGTCCGTGCTGGCCTGGCGGCCACCATCAGCAACTGGCCGCC                                                                                                                                                                                                                                             >  2:1010338/1‑220                                              GCCCATCACCTTGGCTGAAGCCGCAGCGAGCCGCCTGGTAATGCCACCCCGTAGCCTGCACTTGCGCAGGCGCATCGAGCAGGCTGCCATGGAAACCGGTGTGACACTGGACTCCAGCTACGAACAGCAGTCGGCCCCCGGTATCACCAGCCTGGTCCGTGCTGGCCTGGCGGCCACCATCAGCAACTGGCCGCCAGGCCAGCACG                                                                                                                                                                                                                                  <  1:1014846/206‑1                                                                 GCCGCAGCGAGCCGCCTGGTAATGCCACCCCGTAGCCTGCACTTGCGCAGGCGCATCGAGCAGGCTGCCATGGAAACCGGTGTGACACTGGACTCCGGCTACGAACAGCAGTCGGCCCCCGGTATCACCAGCCTGGTCCGTGCTTGCCTCGCGGCCACCCTCAGCAACT                                                                                                                                                                                                                                                    >  2:534176/1‑169                                                                                                GTAGCCTGCACTTGCGCAGGCGCATCGAGCAGGCTGCCATGGAAACCGGTGTGACACTGGACTCCAGCTACGAACAGCAGTCGGCCCCCGGTATCACCAGCCTGGTCCGTGCTGGCCTGGCGGCCACCATCAGCAACTGGCCGCCAGGCCAGCACGGACCAGGCTGGTGATACCGGGGGCCGACTGCTGTTCG                                                                                                                                                                                             >  1:672826/1‑193                                                                                                                                         GAAACCGGTGTGACACTGGACTCCAGCTACGAACAGCAGTCGGCCCCCGGTATCACCAGCCTGGTCCGTGCTGGCCTGGCGGCCACCATCAGCAACTGGCCGCCAGGCCAGCACGGACCAGGCTGGTGATACCGGGGGC                                                                                                                                                                                                          <  2:672823/139‑1                                                                                                                                                                                                                                            CCGCCAGGCCAGCACGGACCAGGCTGGTGATACCGGGGGCCGACTGCTGTTCGTAGCTGGAGTCCAGTGTCACACCGGTTTCCATGGCAGCCTGCTCGAGGCGCCTGCGCAAGTGC                                                                                                                              >  2:299839/1‑116                                                                                                                                                                                                                                                CAGGCCAGCACGGACCAGGCTGGTGATACCGGGGGCCGACTGCTGTTCGTAGCTGGAGTCCAGTGTCACACCGGTTTCCATGGCAGCCTGCTCGATGCGCCTGCGCAAGTGCAGGCTACGGGGTGGCATTACCAGGCGGCTCGCTGCGGCTTCAGCCAAGGTGATGGGCGACTCGTCAGGGCCGTGACCAGGCCGGCCGACCCAATACAGGTCTTCGGAAAACACGGGCTCGGCGA  >  1:52438/1‑236                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             AGACCTGTATTGGGTCGGCCTGCCTGGGCACGGCCCTGACGAGTCGCCCATCACCTTGGCTGAAGCCGCAGCGAGCCGCCTGGTAATGCCACCCCGTAGCCTGCACTTGCGCAGGCGCATCGAGCAGGCTGCCATGGAAACCGGTGTGACACTGGACTCCAGCTACGAACAGCAGTCGGCCCCCGGTATCACCAGCCTGGTCCGTGCTGGCCTGGCGGCCACCATCAGCAACTGGCCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/2320752‑2320513 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggccgccAGGCCAGCACGGACCAGGCTGGTGATACCGGGGGCCGACTGCTGTTCGTAGCTGGAGTCCAGTGTCACACCGGTTTCCATGGCAGCCTGCTCGATGCGCCTGCGCAAGTGCAGGCTACGGGGTGGCATTACCAGGCGGCTCGCTGCGGCTTCAGCCAAGGTGATGGGCGACTCGTCAGGGCCGTGCCCAGGCAGGCCGACCCAATACAGGTCTTCGGAAAACACGGGCTCGGCGA  >  AE015451/2320540‑2320774

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.