New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 2357793	48 (0.830)	4 (0.070)	3/328	NT	8.3%	coding (518/825 nt)	PP_2072	Transcriptional regulator, AraC family
	?	AE015451	= 2357821	42 (0.760)					coding (490/825 nt)	PP_2072	Transcriptional regulator, AraC family

GGTCATGTGGCTCTGGTCATGAAAGCCTGCGGCAAGGGCGGCGTCGACCAAGGTGAAGCCGTCCAGGATCATTCGGCGCAAGCAGTCGAGGCGGCGCAGGGTGACAAAGCGATAGGGGCTGGTGCCGTACAGCGTGCGAAAGTCCCGCGACAGGCTCCAGCGTTCGCGGCCACTGGCCTGTTCCAGCATGTCCAGTGTTATGCCCACATGCAGGTGTTCCATGATGAAGGCTCGGGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/2357555‑2357793 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgggcgcAAGCGCCTGGATTACCAGGCAGCCGAACGCGCCCGAGCCTTCATCATGGAACACCTGCATGTGGGCATAACACTGGACATGCTGGAACAGGCCAGTGGCCGCGAACGCTGGAGCCTGTCGCGGGACTTTCGCACGCTGTACGGCACCAGCCCCTATCGCTTTGTCACCCTGCGCCGCCTCGACTGCTTGCGCC  <  AE015451/2357821‑2357629                                                                                                                                                                                                                                                                                                                                                                                                                                                  GGTCATGTGGCTCTGGTCATGAAAGCCTGCGGCAAGGGCGGCGTCGACCAAGGTGAAGCCGTCCAGGATCATTCGGCGCAAGCAGTCGAGGCGGCGCAGGGTGACAAAGCGATAGGGGCTGGTGCCGTACAGCGTGCGAAAGTCCCGCGACAGGCTCCAGCGTTCGCGGCCACTGGCCTGTTCCAGCATGTCCAGTGTTATGCCCACATGCAGGTGTTCCATGATGAAGGCTCGG                                                                                                                                                                                                       >  1:859366/1‑235                                                                                                                                                                                         AGCATGTCCAGTGTTATGCCCACATGCAGGTGTTCCATGATGAAGGCTCGGGCGCAAGCGCCTGGATTACCAGGCAGCCGAACGCGCCCGAGCCTTCATCATGGAACACCTGCATGTGGGCATAACACTGGACATGCTGGAACAGGCCAGTGGCCGCGAACGCTGGAGCCTGTCGCGGGACTTTCGCACGCTGTACGGCACCAGCCCCTATCGCTTTGTCACCCTGCGCCGCCTC               >  1:692154/1‑235                                                                                                                                                                                                  AGTGTTATGCCCACATGCAGGTGTTCCATGATGAAGGCTCGGGCGCAAGCGCCTGGATTACCAGGCAGCCGAACGCGCCCGAGCCTTCATCATGGAACACCTGCATGTGGGCATAACACTGGACATGCTGGAACAGGCCAGTGGCCGCGAACGCTGGAGCCTGTCGCGGGACTTT                                                                  >  2:772999/1‑175                                                                                                                                                                                                  AGTGTTATGCCCACATGCAGGTGTTCCATGATGAAGGCTCGGGCGCAAGCGCCTGGATTACCAGGCAGCCGAACGCGCCCGAGCCTTCATCATGGAACACCTGCATGTGGGCATAACACTGGACATGCCGGAACAGGCCAGTGGC                                                                                                >  2:815530/1‑145                                                                                                                                                                                                                 TGCAGGTGTTCCATGATGAAGGCTCGGGCGCAAGCGCCTGGATTACCAGGCAGCCGAACGCGCCCGGGCCTTCATCATGGAACAACTGCATGCGGGCATAACACTGGACATGCTGGAACAGGCCAGTGGCCGCG                                                                                            >  2:859363/1‑134                                                                                                                                                                                                                                              GCAAGCGCCTGGATTACCAGGCAGCCGAACGCGCCCGAGCCTTCATCATGGAACACCTGCATGTGGGCATAACACTGGACATGCTGGAACAGGCCAGTGGCCGCGAACGCTGGAGCCTGTCGCGGGACTTTCGCACGCTGTACGGCACCAGCCCCTATCGCTTTGTCACCCTGCGCCGCCTCGACTGCTTGCGCC  <  2:692151/195‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                  GGTCATGTGGCTCTGGTCATGAAAGCCTGCGGCAAGGGCGGCGTCGACCAAGGTGAAGCCGTCCAGGATCATTCGGCGCAAGCAGTCGAGGCGGCGCAGGGTGACAAAGCGATAGGGGCTGGTGCCGTACAGCGTGCGAAAGTCCCGCGACAGGCTCCAGCGTTCGCGGCCACTGGCCTGTTCCAGCATGTCCAGTGTTATGCCCACATGCAGGTGTTCCATGATGAAGGCTCGGGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/2357555‑2357793 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgggcgcAAGCGCCTGGATTACCAGGCAGCCGAACGCGCCCGAGCCTTCATCATGGAACACCTGCATGTGGGCATAACACTGGACATGCTGGAACAGGCCAGTGGCCGCGAACGCTGGAGCCTGTCGCGGGACTTTCGCACGCTGTACGGCACCAGCCCCTATCGCTTTGTCACCCTGCGCCGCCTCGACTGCTTGCGCC  <  AE015451/2357821‑2357629

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.