New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AE015451 = 240534744 (0.760)3 (0.050) 3/324 NT 6.6% coding (344/432 nt) PP_2108 conserved protein of unknown function
?AE015451 = 2405351 43 (0.790)coding (348/432 nt) PP_2108 conserved protein of unknown function

CTGCAATTACTGTGTGGTGCGCTGGAACAGGTACGTGCGTTGTTTGACGCGCCCATCATCATCAGCAGCGGGTATCGCAGCGAAAGGGTCAATCGGTTGATCGGTGGCGCCTCCGATAGCCAGCACGTGCAAGGGCTGGCGGCGGACTTCACGGTGATCGAGGTCAGCCCGCGCGAGACCGTCCGGCGAATCAGCAAAAGTGCGGTGCCCTTCGATCAGCTGATCCTGGAATTCGACAGATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/2405106‑2405347
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgacagatgCACCCATCTGTCGAATTCCAGGATCAGCTGATCGAAGGGCACCGCACTTTTGCTGATTCGCCGGACGGTCTCGCGCGGGCTGACCTCGATCACCGTGAAGTCCGCCGCCAGCCCTTGCACGTGCTGGCTATCGGAGGCGCCACCGATCAACCGATTGACCCTTTCGCTGCGATACCCGCTGCTGATGATGATGGGCGCGTCAAACAACGCACGTACCTGTTCCAGCGCAC  <  AE015451/2405351‑2405122
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        
CTGCAATTACTGTGTGGTGCGCTGGAACAGGTACGTGCGTTGTTTGACGCGCCCATCATCATCAGCAGCGGGTATCGCAGCGAAAGGGTCAATCGGTTGATCGGTGGCGCCTCCGATAGCCAGCACGTGCAAGGGCTGGCGGCGGACTTCACGGTGATCGAGGTCAGCCCGCGCGAGACCGTCCGGCGAATCAGCAAAAGTGCGGTGCCCTTCGATCAGCTGATCCTGGAATTCGA                                                                                                                                                                                                                                              <  1:23750/236‑1
                                                                            gccGCGAAAGGGTCACTCGGTTGATCGGTGGCGCCTCCGATAGCCAGCACGTGCAAGGGCTGGCGGCGGACTTCACGGTGATCGAGGTCAGCCCGCGCGAGACCGTCCGGCGAATCAGCAAAAGTGCGGTGCCCTTCGATCAGCTGATCCTGGAATTCGACA                                                                                                                                                                                                                                            <  1:182342/159‑1
                                                                                                        TGGCGCCTCCGATAGCCAGCACATGCAAGGGCTGGCGGCGGACTTCACGGTGATCGAGGTCAGCCCGCGCGAGACCGTCCGGCGAATCAGCAAAAGTTCGGTGCCCTTCGATCAGCTGATCCTGGAATTCGACAGATGCACCCATCTGTCGAA                                                                                                                                                                                                                         <  2:574830/153‑1
                                                                                                                                                                              GAGACCGTCCGGCGAATCAGCAAAAGTGCGGTGCCCTTCGATCAGCTGATCCTGGACTTCGACAGATGCACCCATCTGGCGAATTCCAGGATCAGCTGATCGAAGGACACCGCCCTCTAGGCGATTCGCCGG                                                                                                                                                                        >  2:552244/1‑132
                                                                                                                                                                                                                  TTCGATCAGCTGATCCTGGAATTCGACAGATGCACCCATCTGTCGAATTCCAGGATCAGCTGATCGAAGGGCACCGCACTTTTGCTGATTCGCCGGACGGTCTCGCGCGGG                                                                                                                                                         >  2:282332/1‑111
                                                                                                                                                                                                                                         CGACAGATGCACCCATCTGTCGAATTCCAGGATCAGCTGATCGAAGGGCACCGCACTTTTGCTGATTCGCCGGACGGTCTCGCGCGGGCTGACCTCGATCACCGTGAAGTCCGCCGCCAGCCCTTGCACGTGCTGGCTATCG                                                                                                   >  2:179961/1‑142
                                                                                                                                                                                                                                            CAGATGCACCCATCTGTCGAATTCCAGGATCAGCTGATCGAAGGGCACCGCACTTTTGCTGATTCGCCGGACGGTCTCGCGCGGGCTGACCTCGATCACCGTGAAGTCCGCCGCCAGCCCTTGCACGTGCTGG                                                                                                         >  2:779126/1‑133
                                                                                                                                                                                                                                             AGATGCACCCATCTGTCGAATTCCAGGATCAGCTGATCGAAGGGCACCGCACTTTTGCTGATTCGCCGGACGGTCTCGCGCGGGCTGACCTCGATCACCGTGAAGTCCGCCGCCAGCCCTTGCACGTGCTGGCTATCGGAGGCGCCACCGATCAACCGATTGACCCTTTCGCTGCGATACCCGCTGCTGATGATGATGGGCGCGTCAAACAACGCACGTACCTGTTCCAGCGCAC  <  1:578354/235‑1
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        
CTGCAATTACTGTGTGGTGCGCTGGAACAGGTACGTGCGTTGTTTGACGCGCCCATCATCATCAGCAGCGGGTATCGCAGCGAAAGGGTCAATCGGTTGATCGGTGGCGCCTCCGATAGCCAGCACGTGCAAGGGCTGGCGGCGGACTTCACGGTGATCGAGGTCAGCCCGCGCGAGACCGTCCGGCGAATCAGCAAAAGTGCGGTGCCCTTCGATCAGCTGATCCTGGAATTCGACAGATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/2405106‑2405347
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgacagatgCACCCATCTGTCGAATTCCAGGATCAGCTGATCGAAGGGCACCGCACTTTTGCTGATTCGCCGGACGGTCTCGCGCGGGCTGACCTCGATCACCGTGAAGTCCGCCGCCAGCCCTTGCACGTGCTGGCTATCGGAGGCGCCACCGATCAACCGATTGACCCTTTCGCTGCGATACCCGCTGCTGATGATGATGGGCGCGTCAAACAACGCACGTACCTGTTCCAGCGCAC  <  AE015451/2405351‑2405122

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.