New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 3082592	57 (0.990)	3 (0.050)	3/326	NT	5.2%	coding (1476/1551 nt)	PP_2692	putative Transporter, BCCT family
	?	AE015451	= 3082723	54 (0.980)					coding (1345/1551 nt)	PP_2692	putative Transporter, BCCT family

CTGTTGGGCATTGTTGTTGTACCTGGATGGATCATGTTCAGACGCCTTGTTCACGGGCCATGTGTCGAGCGATGCGCACGGCATCCCACAGGGCTGGCAGGATCACCAGCGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/3082480‑3082592 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccagcgacGATAAACCGAAGAAGTGGTTGCGCGGTTTCTGGGCAATCGGCATGGGCCTGGCGGCGGTGGTGCTGATCACCATTGGCGCAGGCGGTGTGACGGCCCTGCAATCCTTCATTGTCATCACCGCGGTGCCGGTGTCGCTGGTGATCCTGCCAGCCCTGTGGGATGCCGTGCGCATCGCTCGACACATGGCCCGTGAACAAGGCGTCTGAACATGATCCAT  <  AE015451/3082723‑3082506                                                                                                                                                                                                                                                                                                                                             gTGTGGGGCAGTGTTGTTGTACCTGGATGGATCATGTTCAGACGCCTGGTTCACGGGCCATGTGTCGAGCGATGCGCACGGCATCCCACAGGGCTGGCAGGATCACCAGCGACGATAAACCGAAGAAGTGGTTGCGCGGTTTC                                                                                                                                                                                              <  2:64545/142‑1                                                 GTTCACGGGCCATGTGTCGAGCGATGCGCACGGCATCCCACAGGGCTGGCAGGATCACCAGCGACGATAAACCGAAGAAGTGGTTG                                                                                                                                                                                                       >  1:981812/1‑86                                                 GTTCACGGGCCATGTGTCGAGCGATGCGCACGGCATCCCACAGGGCTGGCAGGATCACCAGCGACGATAAACCGAAGAAGTGGTTG                                                                                                                                                                                                       <  2:981809/86‑1                                                                                                           CAGCGACGATAAACCGAAGAAGTGGTTGCGCGGTTTCTGGGCAATCGGCATGGGCCTGGCGGCGGTGGTGCTGATCACCATTGGCGCAGGCGGTGTGACGGCCCTGCAATCCTTCATTGTCATCACCGCGGTGCCGGTGTCGCTGGTGATCCTGCCAGCCCTGTGGGATGCCGTGCGCATCGCTCGACACATGGCCCGTGAA                         <  1:184121/202‑1                                                                                                             GCGACGATAAACCGAAGAAGTGGTTGCGCGGTTTCTGGGCAATCGGCATGGGCCTGGCGGCGGTGGTGCTGATCACCATTGGCGCAGGCGGTGTGACGGCCCTGCAATCCTTCATTGTCATCACCGCGGTGCCGGTGTCGCTGGTGATCCTGCCAGCCCTGTGGGATGCCGTGCGCATCGCTCGACACATGGCCCGTGAACAAGGCGTCTG              <  2:827397/211‑1                                                                                                               GACGATAAACCGAAGAAGTGGTTGCGCGGTTTCTGGGCAATCGGCATGGGCCTGGCGGCGGTGGTGCTGATCACCATTGGCGCAGGCGGTGTGACGGCCCTGCAATCCTTCATGGTCATCACCGCGGTGCCGGTGTCGCTGGTGATCCTGCCA                                                                      <  1:794297/153‑1                                                                                                                 CGATAAACCGAAGAAGTGGTTGCGCGGTTTCTGGGCAATCGGCATGGGCCTGGCGGCGGTGGTGCTGATCACCATTGGCGCAGGCGGTGTGACGGCCCTGCAATCCTTCATTGTCATCACCGCGGTGCCGGTGTCGCTGGTGATCCTGCCAGCCCTGTGGGATGCCGTGCGCATCGCTCGACACATGGCCCGTGAACAAGGCGTCTGAACATGATCCAT  <  1:1085041/219‑1                                                                                                                                                                                                                                                                                                                                             CTGTTGGGCATTGTTGTTGTACCTGGATGGATCATGTTCAGACGCCTTGTTCACGGGCCATGTGTCGAGCGATGCGCACGGCATCCCACAGGGCTGGCAGGATCACCAGCGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/3082480‑3082592 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccagcgacGATAAACCGAAGAAGTGGTTGCGCGGTTTCTGGGCAATCGGCATGGGCCTGGCGGCGGTGGTGCTGATCACCATTGGCGCAGGCGGTGTGACGGCCCTGCAATCCTTCATTGTCATCACCGCGGTGCCGGTGTCGCTGGTGATCCTGCCAGCCCTGTGGGATGCCGTGCGCATCGCTCGACACATGGCCCGTGAACAAGGCGTCTGAACATGATCCAT  <  AE015451/3082723‑3082506

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.