New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | AE015451 | 3155135 = | 42 (0.730) | 4 (0.070) | 4/330 | NT | 9.4% | intergenic (+13/+24) | PP_2770/PP_2771 | conserved exported protein of unknown function/Sigma‑54 dependent transcriptional regulator |
? | AE015451 | 3155157 = | 37 (0.670) | intergenic (+35/+2) | PP_2770/PP_2771 | conserved exported protein of unknown function/Sigma‑54 dependent transcriptional regulator |
ATCGTTTCTGCCACTGCAACCAGGTGCACACGGCCAGCCTGCTGGGCCTGAGCCGCAACATCACCCGCGCCCGACTGATCGCCATCGGCGAACTGGTGGTCAATCGGCGCCGGCCAGAGCCCCAGACGCGCCCTGAGCGGGCGATGCAACTATCAATCTGAGAGGCCGGGGGGACGCCACCGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AE015451/3155319‑3155135 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccggccTCTCAGATTGATAGTTGCATCGCCCGCTCAGGGCGCGTCTGGGGCTCTGGCCGGCGCCGATTGACCACCAGTTCGCCGATGGCGATCAGTCGGGCGCGGGTGATGTTGCGGCTCAGGCCCAGCAGGCTGGCCGTGTGCACCTGGTTGCAGTGGCAGAAACGATAGGCACTGCGTAGCAGGC > AE015451/3155157‑3155337 ATCGTTTCTGCCACTGCAACCAGGTGCACACGGCCAGCCTGCTGGGCCTGAGCCGCAACATCACCCGCGCCCGACTGATCGCCATCGGCGAACTGGTGGTCAATCGGCGCCGGCCAGAGCCCCAGACGCGCCCTGAGCGGGCGATGCAACTATCAATCTGAGAGGCCGGGGGGACGCCACCGGCCTCTCAGATTGATAGT < 1:804575/200‑1 ATCGTTTCTGCCACTGCAACCAGGTGCACACGGCCAGCCTGCTGGGCCTGAGCCGCAACATCACCCGCGCCCGACTGATCGCCATCGGCGAACTGGTGGTCAATCGGCGCCGGCCAGAGCCCCAGACGCGCCCTGAGCGGGCGATGCAACTATCAATCTGAGAGGCCGGGGGGACGCCACCGGCCTCTCAGATTGATAGT > 2:804572/1‑200 GTTTCTGCCACTGCAACCAGGTGCACACGGCCAGCCTGCTGGGCCTGAGCCGCAACATCACCCGCGCCCGACTGATCGCCATCGGCGAACTGGTGGTCAATCGGCGCCGGCCAGAGCCCCAGACGCGCCCTGAGCGGGCGATGCAACTATCAATCTGAGAGGCCGGGGGGACGCCACCGGCC < 1:243757/182‑1 CACTGCAACCAGGTGCACACGGCCAGCCTGCTGGGCCTGAGCCGCAACATCACCCGCGCCCGACTGATCGCCATCGGCGAACTGGTGGTCAATCGGCGCCGGCCAGAGCCCCAGACGCGCCCTGAGCGGGCGATGCAACTATCAATCTGAGAGGCCGGGGGGACGCCAC < 1:776702/169‑1 GCGCCGGCCAGAGCCCCAGACGCGCCCTGAGCGGGCGATGCAACTATCAATCTGAGAGGCCGGGGGGACGCCAC < 1:153152/74‑1 CTGAGAGGCCGGGGGGACGCCACCGGCCTCTCAGATTGATAGTTGCATCGCCCGCTCAGGGCGCGTCTGGGGCTCTGGCCGGCGCCGATTGACCACCAGTTCGCCGATGGCGATCAGTCGGGCGCGGGTGATGTTGCGGCTCAGGCCCAGCAGGCTGGCCGTGTGCACCTGGTTGCAGTGGCAGAAACGATAGGCACTGCGTAGCAGGC > 1:940293/1‑209 GAGGCCGGGGGGACGCCACCGGCCTCTCAGATTGATAGTTGCATCGCCCGCTC < 2:803150/53‑1 GCCTCTCAGATTGATAGTTGCATCGCCCGCTCAGGGCGCGTCTGGGGCTC > 1:455332/1‑50 GCCTCTCAGATTGATAGTTGCATCGCCCGCTCAGGGCGCGTCTGGGGCTC < 2:455329/50‑1 GCCTCTCAGATTGATAGTTGCATCGCCCGCTCA < 2:995671/33‑1 ATCGTTTCTGCCACTGCAACCAGGTGCACACGGCCAGCCTGCTGGGCCTGAGCCGCAACATCACCCGCGCCCGACTGATCGCCATCGGCGAACTGGTGGTCAATCGGCGCCGGCCAGAGCCCCAGACGCGCCCTGAGCGGGCGATGCAACTATCAATCTGAGAGGCCGGGGGGACGCCACCGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AE015451/3155319‑3155135 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccggccTCTCAGATTGATAGTTGCATCGCCCGCTCAGGGCGCGTCTGGGGCTCTGGCCGGCGCCGATTGACCACCAGTTCGCCGATGGCGATCAGTCGGGCGCGGGTGATGTTGCGGCTCAGGCCCAGCAGGCTGGCCGTGTGCACCTGGTTGCAGTGGCAGAAACGATAGGCACTGCGTAGCAGGC > AE015451/3155157‑3155337 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |