New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	3155135 =	42 (0.730)	4 (0.070)	4/330	NT	9.4%	intergenic (+13/+24)	PP_2770/PP_2771	conserved exported protein of unknown function/Sigma‑54 dependent transcriptional regulator
	?	AE015451	3155157 =	37 (0.670)					intergenic (+35/+2)	PP_2770/PP_2771	conserved exported protein of unknown function/Sigma‑54 dependent transcriptional regulator

GCCAAGGGGCTGGTGCAGCCGCTGAAACTATCCTGCTCCGACCATGAAGGCGGTGGCGCGGTGCGCTTCCAGCAGTGGGACGGGCAGAAGTGGAAACTGATCAGCGACTGGGTACAGGCCGACCGCGCGTTCTTGCGGCCGATCATCGAGGCCTCGTCGCATCAATATGCCAAGGAAAAGGGTATTACCCCGCGTGATTGCAGCCAGGAAGGCTGAGCGCGCCGGCAGGGCCGGTGGCGTCCCCCCGGCCTCTCAGATTGATAGTTGCATCGCCCGCTCAGGGCGCGTCTGGGGCTCTGGCCGGCGCCGATTGACCACCAGTTCGCCGATGGCGATCAGTCGGGCGCGGGTGATGTTGCGGCTCAGGCCCAGCAGGCTGGCCGTGTGCACCTGGTTGCAGTGGCAGAAACGATAGGCACTGCGTAGCAGGCTGTCCTCG  >  AE015451/3154907‑3155345                                                                                                                                                                                                                                     |                                                                                                                                                                                                                   gcCAAGGGGCTGGTGCAGCCGCTGAAACTATCCTGCTCCGACCATGAAGGCGGTGGCGCGGTGCGCTTCCAGCAGTGGGACGGGCAGAAGTGGAAACTGATCAGCGACTGGGTACAGGCCGACCGCGCGTTCTTGCGGCCGATCATCGAGGCCTCGTCGCATCAATATGCCAAGGAAAAGGGTATTACCCCGCGTGATTGCAGCCAGGAAGGCTGAGCGCGCCGGCAGGGCCgg                                                                                                                                                                                                               >  2:619684/1‑234 (MQ=255)    aaGGGGCTGGTGCAGCCGCTGAAACTATCCTGCTCCGACCATGAAGGCGGTGGCGCGGTGCGCTTCCAGCAGTGGGACGGGCAGAAGTGGAAACTGATCAGCGACTGGGTACAGGCCGACCGCGCGTTCTTGCGGCCGATCATCGAGGCCTCGTCGCATCAATATGCCAAGGAAAAGGGTATTACCCCGCGTGATTGCAGCCAGGAAGGCTGAGCGCGCCGGCAGGGCCGGt                                                                                                                                                                                                              <  1:829957/232‑1 (MQ=255)       gggCTGGTGCAGCCGCTGAAACTATCCTGCTCCGACCATGAAGGCGGTGGCGCGGTGCGCTTCCAGCAGTGGGACGGGCAGAAGTGGAAACTGATCAGCGACTGGGTACAGGCCGACCGCGCGTTCTTGCGGCCGATCATCGAGGCCTCGTCGCATCAATATGCCAAGGAAAAGGGTATTACCCCGCGTGATTGCAGCCAGGAAGGCTGAGCGCGCCGGCAGGGc                                                                                                                                                                                                                  <  1:183303/225‑1 (MQ=255)           tGGTGCAGCCGCTGAAACTATCCTGCTCCGACCATGAAGGCGGTGGCGCGGTGCGCTTCCAGCAGTGGGACGGGCAGAAGTGGAAACTGATCAGCGACTGGGTACAGGCCGACCGCGCGTTCTTGCGGCCGATCATCGAGGCCTCGTCGCATCAATATGCCAAGGAAAAGGGTATTACCCCGCGTGATTGCAGCCAGGAAGGCTGAGCGCGCCGGCAGGGCCGGTGGCGTcccccc                                                                                                                                                                                                   <  1:122349/236‑1 (MQ=255)                                        gACCATGAAGGCGGTGGCGCGGTGCGCTTCCAGCAGTGGGACGGGCAGAAGTGGAAACTGATCAGCGACTGGGTACAGGCCGACCGCGCGTTCTTGCGGCCGATCATCGAGGCCTCGTCGCATCAATATGCCAAGGAAAAGGGTATTACCCCGCGTGATTGCAGCCAGGAAGGCTGAGCGCGCCGGCAGGGCCGGTGGCGTCCCCCCGGCCTCTCAGAtt                                                                                                                                                                                      >  2:1053015/1‑220 (MQ=255)                                          ccATGAAGGCGGTGGCGCGGTGCGCTTCCAGCAGTGGGACGGGCAGAAGTGGAAACTGATCAGCGACTGGGTACAGGCCGACCGCGCGTTCTTGCGGCCGATCATCGAGGCCTCGTCGCATCAATATGCCAAGGAAAAGGGTATTACCCCGCGTGATTGCAGCCAGGAAGGCTGAGCGCGCCGGCAGGGCCGGTGGCGt                                                                                                                                                                                                         >  1:738287/1‑199 (MQ=255)                                            aTGAAGGCGGTGGCGCGGTGCGCTTCCAGCAGTGGGACGGGCAGAAGTGGAAACTGATCAGCGACTGGGTACAGGCCGACCGCGCGTTCTTGCGGCCGATCATCGAGGCCTCGTCGCATCAATATGCCAAGGAAAAGGGTATTACCCCGCGTGATTGCAGCCAGGAAGGCTGAGCGCGCCGGCAGGGCCGGTGGCGTCCCCCCGGCCTCTCAGATTGATAGTTGCATCGCCCg                                                                                                                                                                     >  2:364467/1‑233 (MQ=255)                                            aTGAAGGCGGTGGCGCGGTGCGCTTCCAGCAGTGGGACGGGCAGAAGTGGAAACTGATCAGCGACTGGGTACAGGCCGACCGCGCGTTCTTGCGGCCGATCATCGAGGCCTCGTCGCATCAATATGCCAAGGAAAAGGGTATTACCCCGCGTGATTGCAGCCAGGAAGGCTGAGCGCGCCGGCAGGGCCGGTGGCGTCCCCCCGGCCTCTCAGATTGATAGTTGCATCGCCCg                                                                                                                                                                     >  2:578373/1‑233 (MQ=255)                                              ccgcaagaacgcgcGGTGCGCTTCCAGCAGTGGGACGGGCAGAAGTGGAAACTGATCAGCGACTGGGTACAGGCCGACCGCGCGTTCTTGCGGCCGATCATCGAGGCCTCGTCGCATCAATATGCCAAGGAAAAGGGTATTACCCCGCGTGATTGCAGCCAGGAAGGCTGAGCGCGCCGGCAGGGCCGGTGGCGTCCCCCCGGCCTCTCAGATTGATAGTTGCATCGCCCGCTCAg                                                                                                                                                                >  1:827919/11‑236 (MQ=255)                                                gcctgctacgcagtgcctatcgtttctgccactgcaaccaggtgcacacggccagcctgctgggcctgagccgcaacatcacccgcgcccgactgatcgccatcggcgaactggtggtcaatcggcgccggccagagccccagacgcgccctgagcgggcgatgcaactatcaatctgagaGGCCGGTGGCGTCCCCCCGGCCTCTCAg                                                                                                                                                                                         >  1:940293‑M1/182‑209 (MQ=255)                                                 ggCGGTGGCGCGGTGCGCTTCCAGCAGTGGGACGGGCAGAAGTGGAAACTGATCAGCGACTGGGTACAGGCCGACCGCGCGTTCTTGCGGCCGATCATCGAGGCCTCGTCGCATCAATATGCCAAGGAAAAGGGTATTACCCCGCGTGATTGCAGCCAGGAAGGCTGAGCGCGCCGGCAGGGCCGGTGGCGTCCCCCCGGCCTCTCAGATTGATAGTTGCATCGCCCGCTCAggg                                                                                                                                                              >  1:744787/1‑235 (MQ=255)                                                        gcgcGGTGCGCTTCCAGCAGTGGGACGGGCAGAAGTGGAAACTGATCAGCGACTGGGTACAGGCCGACCGCGCGTTCTTGCGGCCGATCATCGAGGCCTCGTCGCATCAATATGCCAAGGAAAAGGGTATTACCCCGCGTGATTGCAGCCAGGAAGGCTGAGCGCGCCGGCAGGGCCGGTGGCGTCCCCCCGGCCTCTCAGATTGATAGTTGCATCGCCCGCTCAGGGCGCGTCTg                                                                                                                                                      >  1:372392/1‑236 (MQ=255)                                                           cgGTGCGCTTCCAGCAGTGGGACGGGCAGAAGTGGAAACTGATCAGCGACTGGGTACAGGCCGACCGCGCGTTCTTGCGGCCGATCATCGAGGCCTCGTCGCATCAATATGCCAAGGAAAAGGGTATTACCCCGCGTGATTGCAGCCAGGAAGGCTGAGCGCGCCGGCAGGGCCGGTGGCGTCCCCCCGGCCTCTCAGATTGATAGTTGCATCGCCCGCTCAGGGCGCGTCTggg                                                                                                                                                    <  1:553130/235‑1 (MQ=255)                                                                cgcTTCCAGCAGTGGGACGGGCAGAAGTGGAAACTGATCAGCGACTGGGTACAGGCCGACCGCGCGTTCTTGCGGCCGATCATCGAGGCCTCGTCGCATCAATATGCCAAGGAAAAGGGTATTACCCCGCGTGATTGCAGCCAGGAAGGCTGAGCGCGCCGGCAGGGCCGGTGGCGTCCCCCCGGCCTCTCAGATTGATAGTTGCATCGCCCGCTCAGGGCGCGTCTGGGGCTCTg                                                                                                                                              <  1:387983/236‑1 (MQ=255)                                                                  cTTCCAGCAGTGGGACGGGCAGAAGTGGAAACTGATCAGCGACTGGGTACAGGCCGACCGGGCGTTCTTGCGGCCGACCATCGAGGCCTCGTCGCATCAATATGCCAAGGAAAAGGGTATTACCCCGCGTGATTGCAGCCAGGAAGGCTGAGCGCGCCGGCAGGGCCGGTGGCGTCCCCCCGGCCTCTCAGATTGATAGTTGCATCGCCCGCTCAGGGCGCGTCTGGGGCTCTGGc                                                                                                                                            <  1:1002423/236‑1 (MQ=255)                                                                   ttCCAGCAGTGGGACGGGCAGAAGTGGAAACTGATCAGCGACTGGGTACAGGCCGACCGCGCGTTCTTGCGGCCGATCATCGAGGCCTCGTCGCATCAATATGCCAAGGAAAAGGGTATTACCCCGCGTGATTGCAGCCAGGAAGGCTGAGCGCGCCGGCAGGGCCGGTGGCGTCCCCCCGGCCTCTCa                                                                                                                                                                                          >  1:26275/1‑189 (MQ=255)                                                                           gTGGGACGGGCAGAAGTGGAAACTGATCAGCGACTGGGTACAGGCCGACCGCGCGTTCTTGCGGCCGATCATCGAGGCCTCGTCGCATCAATATGCCAAGGAAAAGGGTATTACCCCGCGTGATTGCAGCCAGGAAGGCTGAGCGCGCCGGCAGGGCCGGTGGCGTCCCCCCGGCCTCTCAGATTGATAGTTGCATCGCCCGCTCAGGGCGCGTCTGGGGCTCTGGCCGGCGCCGa                                                                                                                                   >  1:906139/1‑236 (MQ=255)                                                                           gTGGGACGGGCAGAAGTGGAAACTGAACAGCGACTGGGTACAGGCCGACCGCGCGTTCTTGCGGCCGATCATCGAGGCCTCGTCGCATCAATATGCCAAGGAAAAGGGTATTACCCCGCGTGATTGCAGCCAGGAAGCCTGAGCGCGCCGGCAGGGCCGGTGGCGTCCCCCCGGCCTCTCAGATTGATAGTTGCa                                                                                                                                                                            >  2:567408/1‑195 (MQ=255)                                                                            tGGGACGGGCAGAAGTGGAAACTGATCAGCGACTGGGTACAGGCCGACCGCGCGTTCTTGCGGCCGATCATCGAGGCCTCGTCGCATCAATATGCCAAGGAAAAGGGTATTACCCCGCGTGATTGCAGCCAGGAAGGCTGAGCGCGCCGGCAGGGCCGGTGGCGTCCCCCCGGCCTCTCAGATTGATAGTTGCATCGCCCGCTCAGGGCGCGTCTGGGGCTCTGGc                                                                                                                                            <  2:661236/226‑1 (MQ=255)                                                                                                      cAGCGACTGGGTACAGGCCGACCGCGCGTTCTTGCGGCCGATCATCGAGGCCTCGTCGCATCAATATGCCAAGGAAAAGGGTATTACCCCGCGTGATTGCAGCCAGGAAGGCTGAGCGCGCCGGCAGGGCCGGTGGCGTCCCCCCGGCCTCTCAGATTGATAGTTGCATCGCCCGCTCAGGGCGCGTCTGGGGCTCTGGCCGGCGCCGATTGACCACCAGTTCGCCGATGGCGATc                                                                                                        <  1:1063955/236‑1 (MQ=255)                                                                                                       aGCGACTGGGTACAGGCCGACCGCGCGTTCTTGCGGCCGATCATCGAGGCCTCGTCGCATCAATATGCCAAGGAAAAGGGTATTACCCCGCGTGATTGCAGCCAGGAAGGCTGAGCGCGCCGGCAGGGCCGGTGGCGTCCCCCCGGCCTCTCAGATTGATAGTTGCATCGCCCGCTCAGGGCGCGTCTGGGGCTCTGGCCGGCGCCGATTGaccac                                                                                                                           >  2:841516/1‑216 (MQ=255)                                                                                                           aCTGGGTACAGGCCGACCGCGCGTTCTTGCGGCCGATCATCGAGGCCTCGTCGCATCAATATGCCAAGGAAAAGGGTATTACCCCGCGTGATTGCAGCCAGGAAGGCTGAGCGCGCCGGCAGGGCCGGTGGCGTCCCCCCGGCCTCTCAGATTGATAGTTGCATCGCCCGCTCAGGGCGCGTCTGGGGCTCTGGCCGGCGCCGATTGACCACCAGTTCGCCGATGGCGATCAGTCg                                                                                                   <  1:578376/236‑1 (MQ=255)                                                                                                                 tACAGGCCGACCGCGCGTTCTTGCGGCCGATCATCGAGGCCTCGTCGCATCAATATGCCAAGGAAAAGGGTATTACCCCGCGTGATTGCAGCCAGGAAGGCTGAGCGCGCCGGCAGGGCCGGTGGCGTCCCCCCGGCCTCTCAGATTGATAGTTGCATCGCCCGCTCAGGGCGCGTCTGGGGCTCTGGCCGGCGCCGATTGACCACCAGTTCGCCGATGGCGATCAGTCGGGcgcg                                                                                             >  1:420620/1‑236 (MQ=255)                                                                                                                  aCAGGCCGACCGCGCGTTCTTGCGGCCGATCATCGAGGCCTCGTCGCATCAATATGCCAAGGAAAAGGGTATTACCCCGCGTGATTGCAGCCAGGAAGGCTGAGCGCGCCGGCAGGGCCGGTGGCGTCCCCCCGGCCTCTCAGATTGATAGTTGCATCGCCCGCTCAGGGCGCGTCTGGGGCTCTGGCCGGCGCCGATTGACCACCAGTTCGCCGATGGCGATCAGTCGGgcgc                                                                                              <  2:835542/234‑1 (MQ=255)                                                                                                                   cAGGCCGACCGCGCGTTCTTGCGGCCGATCATCGAGGCCTCGTCGCATCAATATGCCAAGGAAAAGGGTATTACCCCGCGTGATTGCAGCCAGGAAGGCTGAGCGCGCCGGCAGGGCCGGTGGCGTCCCCCCGGCCTCTCAGATTGATAGTTGCATCGCCCGCTCAGGGCGCGTCTGGGGCTCTGGCCGGCGCCg                                                                                                                                    <  1:747301/195‑1 (MQ=255)                                                                                                                           ccGCGCGTTCTTGCGGCCGATCATCGAGGCCTCGTCGCATCAATATGCCAAGGAAAAGGGTATTACCCCGCGTGATTGCAGCCAGGAAGGCTGAGCGCGCCGGCAGGGCCGGTGGCGTCCCCCCGGCCTCTCAGATTGATAGTTGCATc                                                                                                                                                                          <  1:7586/149‑1 (MQ=255)                                                                                                                              cgcgTTCTTGCGGCCGATCATCGAGGCCTCGTCGCATCAATATGCCAAGGAAAAGGGTATTACCCCGCGTGATTGCAGCCAGGAAGGCTGAGCGCGCCGGCAGGGCCGGTGGCGTCCCCCCGGCCTCTCAGATTGATAGTTGCATCGCCCGCTCAGGGCGCGTCTGGGGCTCTGGCCGGCGCCGATTGACCACCAGTTCGCCGATGGCGATCAGTCGGGCGCGGGTGATGTTGCgg                                                                                <  1:364470/236‑1 (MQ=255)                                                                                                                                                      ggCCTCGTCGCATCAATATGCCAAGGAAAAGGGTATTACCCCGCGTGATTGCAGCCAGGAAGGCTGAGCGCGCCGGCAGGGCCGGTGGCGTCCCCCCGGCCTCTCAGATTGATAGTTGCATCGCCCGCTCAGGGCGCGTCTGGGGCTCTGGCCGGCGCCGATTGACCACCAGTTCGCCGATGGCGATCAGTCGGGCGCGGGTGATGTTGCGGCTCAGGCCCAGCAGGCTGGCCgt                                                         >  1:775737/1‑235 (MQ=255)                                                                                                                                                        ccTCGTCGCATCAATATGCCAAGGAAAAGGGTATTACCCCGCGTGATTGCAGCCAGGAAGGCTGAGCGCGCCGGCAGGGCCGGTGGCGTCCCCCCGGCCTCTCAGATTGATAGTTGCATCGCCCGCTCAGGGCGCGTCTGGGGcc                                                                                                                                                 >  2:780315/1‑144 (MQ=255)                                                                                                                                                             tcgCATCAATATGCCAAGGAAAAGGGTATTACCCCGCGTGATTGCAGCCAGGAAGGCTGAGCGCGCCGGCAGGGCCGGTGGCGTCCCCCCGGCCTCTCAGATTGATAGTTGCATCGCCCGCTCAGGGCGCGTCTGGGGCTCTGGCCGGCGCCGATTGac                                                                                                                              <  1:760437/159‑1 (MQ=255)                                                                                                                                                                  tCAATATGCCAAGGAAAAGGGTATTACCCCGCGTGATTGCAGCCAGGAAGGCTGAGCGCGCCGGCAGGGCCGGTGGCGTCCCCCCGGCCTCTCAGATTGATAGTTGCATCGCCCGCTCAGGGCGCGTCTGGGGCTCTGGCCGGCGCCGATTGACCACCAGTTCGCCGATGGCGATCAGTCGGGCGCGGGTGATGTTGCGGCTCAGGCCCAGCAGGCTGGCCGTGTGCACCTGGtt                                             <  1:619687/235‑1 (MQ=255)                                                                                                                                                                          ccAAGGAAAAGGGTATTACCCCGCGTGATTGCAGCCAGGAAGGCTGAGCGCGCCGGCAGGGCCGGTGGCGTCCCCCCGGCCTCTCAGATTGATAGTTGCATCGCCCGCTCAGGGCGCGTCTGGGGCTCTGGCCGGCGCCGATTGACCACCAGTTCGCCGATGGCGATCAGTc                                                                                                    <  2:428788/172‑1 (MQ=255)                                                                                                                                                                              ggAAAAGGGTATTACCCCGCGTGATTGCAGCCAGGAAGGCTGAGCGCGCCGGCAGGGCCGGTGGCGTCCCCCCGGCCTCTCAGATTGATAGTTGCa                                                                                                                                                                            >  1:272240/1‑96 (MQ=255)                                                                                                                                                                              ggAAAAGGGTATTACCCCGCGTGATTGCAGCCAGGAAGGCTGAGCGCGCCGGCAGGGCCGGTGGCGTCCCCCCGGCCTCTCAGATTGATAGTTGCa                                                                                                                                                                            <  2:272237/96‑1 (MQ=255)                                                                                                                                                                                 aaaGGGTATTACCCCGCGTGATTGCAGCCAGGAAGGCTGAGCGCGCCGGCAGGGCCGGTGGCGTCCCCCCGGCCTCTCAGATTGATAGTTGCATCGCCCGCTCAGGGCGCGTCTGGGGCTCTGGCCGgc                                                                                                                                        >  2:398363/1‑129 (MQ=255)                                                                                                                                                                                  aaGGGTATTACCCCGCGTGATTGCAGCCAGGAAGGCTGAGCGCGCCGGCAGGGCCGGTGGCGTCCCCCCGGCCTCTCAGATTGATAGTTGCATCGCCCGCTCAGGGCGCGTCTGGGGCTCTGGCCGGCGCCGATTGACCACCAGTTCGCCGATGGCGATCAGTCGGGCGCGGGTGATGTTGCGGCTCAGGCCCAGCAGGCTGGCCGTGTGCACCTGGTTGCAGTGGCAGAAACGAt                            <  1:1055485/236‑1 (MQ=255)                                                                                                                                                                                      gagccccagacgcgccctgagcgggcgatgcaactatcaatctgagaGGc                                                                                                                                                                                                                  <  2:455329‑M1/3‑1 (MQ=255)                                                                                                                                                                                      gagccccagacgcgccctgagcgggcgatgcaactatcaatctgagaGGc                                                                                                                                                                                                                  >  1:455332‑M1/48‑50 (MQ=255)                                                                                                                                                                                          tACCCCGCGTGATTGCAGCCAGGAAGGCTGAGCGCGCCGGCAGGGCCGGTGGCGTCCCCCCGGCCTCTCAGATTGATAGTTGCATCGCCCGCTCAGGGCGCGTCTGGGGCTCTGGCCGGCGCCGATTGACCACCAGTTCGCCGATGGCGATCAGTCGGGCGCGGGTGATGTTGCGGCTCAGGCCCAGCAGGCTGGCCGTGTGCACCTGGTTGCAGTGGCAGAAACGATAGGCACt                     >  1:882801/1‑235 (MQ=255)                                                                                                                                                                                           aCCCCGCGTGATTGCAGCCAGGAAGGCTGAGCGCGCCGGCAGGGCCGGTGGCGTCCCCCCGGCCTCTCAGATTGATAGTTGCATCGCCCGCTCAGGGCGCGTCTGGGGCTCTGGCCGGCGCCGATTGACCACCAGTTCGCCGATGGCGATCAGTCGGGCGCGGGTGATGTTGCGGCTCAGGCCCAGCAGGCTGGcc                                                           >  2:1000583/1‑196 (MQ=255)                                                                                                                                                                                            ccccGCGTGATTGCAGCCAGGAAGGCTGAGCGCGCCGGCAGGGCCGGTGGCGTCCCCCCGGCCTCTCAGATTGATAGTTGCATCGCCCGCTCAGGGCGCGTCTGGGGCTCTGGCCGGCGCCGATTGACCACCAGTTCGCCGATGGCGATCAGTCGGGCGCGGGTGATGTTGCGGCTCAGGCCCAGCAGGCTGGCCGTGTGCACCTGGTTGCAGTGGCa                                    <  2:841050/218‑1 (MQ=255)                                                                                                                                                                                              ccGCGTGATTGCAGCCAGGAAGGCTGAGCGCGCCGGCAGGGCCGGTGGCGTCCCCCCGGCCTCTCAGATTGATAGTTGCATCGCCCGCTCAGGGCGCGTCTGGGGCTCTGGCCGGCGCCGATTGACCACCAGTTCGCCGATGGCGATCAGTCGGGCGCGGGTGATGTTGCGGCTCAGGCCCAGCAGGCTGGCCGTGTGCACCTGGTTGCAGTGGCa                                    <  2:911792/216‑1 (MQ=255)                                                                                                                                                                                                   tGATTGCAGCCAGGAAGGCTGAGCGCGCCGGCAGGGCCGGTGGCGTCCCCCCGGCCTCTCAGATTGATAGTTGCATCGCCCGCTCAGGGCGCGTCTGGGGCTCTGGCCGGCGCCGATTGACCACCAGTTCGCCGATGGCGATCAGTCGGGCGCGGGTGATGTTGCGGCTCAGGCCCAGCAGGCTGGCCGTGTGCACCTGGTTGCAGTGGCAGAAAc                               >  1:2853/1‑216 (MQ=255)                                                                                                                                                                                                    gATTGCAGCCAGGAAGGCTGAGCGCGCCGGCAGGGCCGGTGGCGTCCCCCCGGCCTCTCAGATTGATAGTTGCATCGCCCGCTCAGGGCGCGTCTGGGGCTCTGGCCGGCGCCGATTGGCCACCAGTTCGCCg                                                                                                                 >  1:194923/1‑133 (MQ=255)                                                                                                                                                                                                       tgagcgggcgatgcaactatcaatctgagaGGc                                                                                                                                                                                                                  <  2:995671‑M1/3‑1 (MQ=255)                                                                                                                                                                                                        gagcgggcgatgcaactatcaatctgagaGGCCGGTGGCGTCCCCCCGGCctc                                                                                                                                                                                             <  2:803150‑M1/24‑1 (MQ=255)                                                                                                                                                                                                             cAGGAAGGCTGAGCGCGCCGGCAGGGCCGGTGGCGTCCCCCCGGCCTCTCAGATTGATAGTTGCATCGCCCGCTCAGGGCGCGTCTGGGGCTCTGGCCGGCGCCGATTGACCACCAGTTCGCCGATGGCGATCAGTCGGGCGCGGGTGATGTTGCGGCTCAGGCCCAGCAGGCTGGCCGTGTGCACCTGGTTGCAGTGGCAGAAACGATAGGCACTGCGTAGCAGGCTGTCCTCg  <  2:827916/235‑1 (MQ=255)                                                                                                                                                                                                              aGGAAGGCTGGGGGCGCCGGCAGGGCCGGTGGCGTCCCCCCGGCCTCTCAGATTGATAGTTGCATCGCCCGCTCAGGGCGCGTCTGGGGCTCTGGCCGGCGCCGATTGACCACCAGTTCGCCGATGGCGATCAGTCGGGCGCGGGTGATGTTGCGGCTCAGGCCCAGCAGGCTGGc                                                            <  2:347070/176‑1 (MQ=255)                                                                                                                                                                                                                      actatcaatctgagaGGCCGGTGGCGTCCCCCCGGCCTCTCAGATTGATAGTTGCATCGCCCGCTCAGGGCGCGTCTGGGGCTCTGGCCGGCGCCGATTGACCACCAGTTCGCCGATGGCGATCAGTCGGGCGCGGGTGATGTTGCGGCTCAGGCCCAGCAGGCTGGCCGTGTGCACCTGGTTGCAGTGGCAGAAACGAt                            <  1:804575‑M1/185‑1 (MQ=255)                                                                                                                                                                                                                      actatcaatctgagaGGCCGGTGGCGTCCCCCCGGCCTCTCAGATTGATAGTTGCATCGCCCGCTCAGGGCGCGTCTGGGGCTCTGGCCGGCGCCGATTGACCACCAGTTCGCCGATGGCGATCAGTCGGGCGCGGGTGATGTTGCGGCTCAGGCCCAGCAGGCTGGCCGTGTGCACCTGGTTGCAGTGGCAGAAACGAt                            >  2:804572‑M1/16‑200 (MQ=255)                                                                                                                                                                                                                                     GGCCGGTGGCGTCCCCCCGGCCTCTCAGATTGATAGTTGCATCGCCCGCTCAGGGCGCGTCTGGGGCTCTGGCCGGCGCCGATTGACCACCAGTTCGCCGATGGCGATCAGTCGGGCGCGGGTGATGTTGCGGCTCAGGCCCAGCAGGCTGGCCGTGTGCACCTGGTTGCAGTGGCAGAAAc                               <  1:243757‑M1/182‑1 (MQ=255)                                                                                                                                                                                                                                     |                                                                                                                                                                                                                   GCCAAGGGGCTGGTGCAGCCGCTGAAACTATCCTGCTCCGACCATGAAGGCGGTGGCGCGGTGCGCTTCCAGCAGTGGGACGGGCAGAAGTGGAAACTGATCAGCGACTGGGTACAGGCCGACCGCGCGTTCTTGCGGCCGATCATCGAGGCCTCGTCGCATCAATATGCCAAGGAAAAGGGTATTACCCCGCGTGATTGCAGCCAGGAAGGCTGAGCGCGCCGGCAGGGCCGGTGGCGTCCCCCCGGCCTCTCAGATTGATAGTTGCATCGCCCGCTCAGGGCGCGTCTGGGGCTCTGGCCGGCGCCGATTGACCACCAGTTCGCCGATGGCGATCAGTCGGGCGCGGGTGATGTTGCGGCTCAGGCCCAGCAGGCTGGCCGTGTGCACCTGGTTGCAGTGGCAGAAACGATAGGCACTGCGTAGCAGGCTGTCCTCG  >  AE015451/3154907‑3155345

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.