New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AE015451 = 328972631 (0.540)3 (0.050) 3/328 NT 8.7% coding (758/1752 nt) PP_2892 conserved exported protein of unknown function
?AE015451 = 3289733 33 (0.600)coding (765/1752 nt) PP_2892 conserved exported protein of unknown function

CCTGGCCGTCGACCCGCAAGCCGGTGTGGCGGATATCGAACTGGTCTACCAGAGTGGCCCGCGTTATCGCCTGGGCGCCGTCACCTTCGGTGGCGACACACCGCTGGACGAGGACCTGCTGCAGCGCATGGTGTCGTTCAAGCCGGGTACCCCTTACGACTCGGAACTGGTCGCAGAGCTGAACAACGACCTGCAATCGAGCGGCTATTTCGAAGGCGTGCGCGTGGATGCGGCGCCCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/3289487‑3289726
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcccacAGCAGCAGTGGGCGCCGCATCCACGCGCACGCCTTCGAAATAGCCGCTCGATTGCAGGTCGTTGTTCAGCTCTGCGACCAGTTCCGAGTCGTAAGGGGTACCCGGCTTGAACGACACCATGCGCTGCAGCAGGTCCTCGTCCAGCGGTGTGTCGCCACCGAAGGTGACGGCGCCCAGGCGATAACGCGGGCCACTCTGGTAGACCAGTTCGATATCCGCCACACCGGCTTG  <  AE015451/3289733‑3289503
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       
CCTGGCCGTCGACCCGCAAGCCGGTGTGGCGGATATCGAACTGGTCTACCAGAGTGGCCCGCGTTATCGCCTGGGCGCCGTCACCTTCGGTGGCGACACACCGCTGGACGAGGACCTGCTGCAGCGCATGGTGTCGTTCAAGCCGGGTACCCCTTACGACTCGGAACTGGTCGCAGAGCTGAACAACGACCTGCAATCGAGCGGCTATTTCGAAGGCGTGCGCGTGGATGCGGC                                                                                                                                                                                                                                               <  2:771847/234‑1
 CTGGCCGTCGACCCGCAAGCCGGTGTGGCGGATATCGAACTGGTCTACCAGAGTGGCCCGCGTTATCGCCTGGGCGCCGTCACCTTCGGTGGCGACACACCGCTGGACGAGGACCTGCTGCAGCGCATGGTGTCGTTCAAGCCGGGTACCCCTTACGACTCGGAACTGGTCGCAGAGCTGAACAACGACCTGCAATCGAGCGGCTATTTCGAAGGCGTGCGCGTGGATGCGGC                                                                                                                                                                                                                                               >  2:749732/1‑233
      CGTCGACCCGCAAGCCGGTGTGGCGGATATCGAACTGGTCTACCAGAGTGGCCCGCGTTATCGCCTGGGCGCCGTCACCTTCGGTGGCGACACACCGCTGGACGAGGACCTGCTGCAGCGCATGGTGTCGTTCAAGCCGGGTACCCCTTACGACTCGGAACTGGTCGCAGAGCTGAACAACGACCTGCAATCGAGCGGCTATTTCGAAGGCGTGCGCGTGGATGCGGCGCCCA                                                                                                                                                                                                                                          <  2:572448/233‑1
                                     GAACTGGTCTACCAGAGTGGCCCGCGTTATCGCCTGGGCGCCGTCACCTTCGGTGGCGACACACCGCTGGACGAGGACCTGCTGCAGCGCATGGTGTCGTTCAAGCCGGGTACCCCTTACGACTCGGAACTGGTCGCAGAGCTGAACAACGACCTGCAATCGAGCGGCTATTTCGAAGGCGTGCGCGTGGATGCGGCGCC                                                                                                                                                                                                                                            >  1:535922/1‑200
                                                                                                                                                                   GAACTGGTCGCAGAGCTGAACAACGACCTGCAATCGAGCGGCTATTTCGAAGGCGTGCGCGTGGATGCGGCGCCCACAGCAGCAGGGGGCGCCGCATCCACGCGC                                                                                                                                                                                                             >  1:326583/1‑105
                                                                                                                                                                            GCAGAGCTGAACAACGACCTGCAATCGAGCGGCTATTTCGAAGGCGTGCGCGTGGATGCGGCGCCCACAGCAGCAGTGGGCGCCGCATCCACGCGCACGCCTTCGAAATAGCCGCTCGATTGCAGGTCGTTGTTCAGCTCTGCGACCAGTTCCGAGTCGTAAGGGGTACCCGGCTTGAACGACACCATGCGCTGCAGCAGGTCCTCGTCCAGCGGTGTGTC                                                                                >  2:635101/1‑221
                                                                                                                                                                                 GCTGAACAACGACCTGCAATCGAGCGGCTATTTCGAAGGCGTGCGCGTGGATGCGGCGCCCACAGCAGCAGTGGGCGCCGCATCCACGCGCACGCCTTCGAAATAGCCGCTCGATTGCAGGTCGTTGTTCAGCTCTGCGACCAGTTTCGAGTCGTAAGGGGTACCCGGCTTGAACGACACCATG                                                                                                                >  1:370803/1‑184
                                                                                                                                                                                                                                              ACAGCAGCATTGGGCGCCGCTTCCACGCGCACGCCTTCGAAATAGCCGCTCGATTGCAGGTCGTTGTTCAGCTCTGCGACCAGTTCCGAGTCGTAAGGGGTACCCGGCTTGAACGACACCATGCGCTGCAGCAGGTCCTCGTCCAGCGGTGTGGCGCCACCGAAGGTGACGGCGCCCAGGCGATAACGCGGGCCACTCTGGTAGACCAGTTCGATATCCGCCACACCGGCTTG  >  2:562744/1‑233
                                                                                                                                                                                                                                              ACAGCAGCAGTGGGCGCCGCATCCACGCGCACGCCTTCGAAATAGCCGCTCGATTGCAGGTCGTTGTTCAGCTCTGCGACCAGTTCCGAGTCGTAAGGGGTACCCGGCTTGAACGACACCATGCGCTGCAGCAGGTCCTCGTCCAGCGGTGTGTCGC                                                                              >  2:535919/1‑157
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       
CCTGGCCGTCGACCCGCAAGCCGGTGTGGCGGATATCGAACTGGTCTACCAGAGTGGCCCGCGTTATCGCCTGGGCGCCGTCACCTTCGGTGGCGACACACCGCTGGACGAGGACCTGCTGCAGCGCATGGTGTCGTTCAAGCCGGGTACCCCTTACGACTCGGAACTGGTCGCAGAGCTGAACAACGACCTGCAATCGAGCGGCTATTTCGAAGGCGTGCGCGTGGATGCGGCGCCCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/3289487‑3289726
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcccacAGCAGCAGTGGGCGCCGCATCCACGCGCACGCCTTCGAAATAGCCGCTCGATTGCAGGTCGTTGTTCAGCTCTGCGACCAGTTCCGAGTCGTAAGGGGTACCCGGCTTGAACGACACCATGCGCTGCAGCAGGTCCTCGTCCAGCGGTGTGTCGCCACCGAAGGTGACGGCGCCCAGGCGATAACGCGGGCCACTCTGGTAGACCAGTTCGATATCCGCCACACCGGCTTG  <  AE015451/3289733‑3289503

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.