New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 3289726	31 (0.540)	3 (0.050)	3/328	NT	8.7%	coding (758/1752 nt)	PP_2892	conserved exported protein of unknown function
	?	AE015451	= 3289733	33 (0.600)					coding (765/1752 nt)	PP_2892	conserved exported protein of unknown function

CAAGCCGGTGTGGCGGATATCGAACTGGTCTACCAGAGTGGCCCGCGTTATCGCCTGGGCGCCGTCACCTTCGGTGGCGACACACCGCTGGACGAGGACCTGCTGCAGCGCATGGTGTCGTTCAAGCCGGGTACCCCTTACGACTCGGAACTGGTCGCAGAGCTGAACAACGACCTGCAATCGAGCGGCTATTTCGAAGGCGTGCGCGTGGATGCGGCGCCCACTGCTGCTGTGGGCGAAGAAGTCCCGGTGGATGTTCATCTGGAAACCCGTAAACCACGCACCATGGGCCTTGGCCTGGGCTTCTCGACCGACGTCGGGCCGCGCGGCAAGGCCAACTGGACCCGCCACTGGGTCAACCCACAAGGCCACAGCTATGGCTGGGAAACCGAACTGTCGGCCCCGCGCCAGAACGTCGGCC  >  AE015451/3289503‑3289923                                                                                                                                                                                                                                       |                                                                                                                                                                                               cAAGCCGGTGTGGCGGATATCGAACTGGTCTACCAGAGTGGCCCGCGTTATCGCCTGGGCGCCGTCACCTTCGGTGGCGCCACACCGCTGGACGAGGACCTGCTGCAGCGCATGGTGTCGTTCAAGCCGGGTACCCCTTACGACTCGGAACTGGTCGCAGAGCTGAACAACGACCTGCAATCGAGCGGCTATTTCGAAGGCGTGCGCGTGGAAGCGGCGCCCAATGCTGCTgt                                                                                                                                                                                              >  2:562744‑M2/1‑231 (MQ=255)             gCGGATATCGAACTGGTCTACCAGAGTGGCCCGCGTTATCGCCTGGGCGCCGTCACCTTCGGTGGCGACACACCGCTGGACGAGGACCTGCTGCAGCGCATGGTGTCGTTCAAGCCGGGTACCCCTTACGACTCGGAACTGGTCGCAGAGCTGAACAACGACCTGCAATCGAGCGGCTATTTCGAAGGCGTGCGCGTGGATGCGGCGCCCACTGCTGCTGTGGGCGAAGAAGTccc                                                                                                                                                                               <  1:741389/236‑1 (MQ=255)                      gAACTGGTCTACCAGAGTGGCCCGCGTTATCGCCTGGGCGCCGTCACCTTCGGTGGCGACACACCGCTGGACGAGGACCTGCTGCAGCGCATGGTGTCGTTCAAGCCGGGTACCCCTTACGACTCGGAACTGGTCGCAGAGCTGAACAACGACCTGCAATCGAGCGGCTATTTCGAAGGCGTGCGCGTGGATGCGGCGCCCACTGCTGCTGTGGGCGAAGAAGTCCCGGTGGATGt                                                                                                                                                                      >  1:1013223/1‑236 (MQ=255)                       aaCTGGTCTACCAGAGTGGCCCGCGTTATCGCCTGGGCGCCGTCACCTTCGGTGGCGACACACCGCTGGACGAGGACCTGCTGCAGCGCATGGTGTCGTTCAAGCCTGGTACCCCTTACGACTCGGAACTGGTCGCAGAGCTGAACAACGACCTGCAATCGAGCGGCTATTTCGAAGGCGTGCGCGTGGATGCGGCGCCCACTGCTGCTGTGGGCgaagaa                                                                                                                                                                                    <  1:397399/221‑1 (MQ=255)                                    gagTGGCCCGCGTTATCGCCTGGGCGCCGTCACCTTCGGTGGCGACACACCGCTGGACGAGGACCTGCTGCAGCGCATGGTGTCGTTCAAGCCGGGTACCCCTTACGACTCGGAACTGGTCGCAGAGCTGAACAACGACCTGCAATCGAGCGGCTATTTCGAAGGCGTGCGCGTGGATGCGGCGCCCACTGCTGCTGTGGGCGAAGAAGTCCCGGTGGATGTTCATCTGGAAAcc                                                                                                                                                         <  1:615316/235‑1 (MQ=255)                                     agTGGCCCGCGTTATCGCCTGGGCGCCGTCACCTTCGGTGGCGACACACCGCTGGACGAGGACCTGCTGCAGCGCATGGTGTCGTTCAAGCCGGGTACCCCTTACGACTCGGAACTGGTCGCAGAGCTGAACAACGACCTGCAATCGAGCGGCTATTTCGAAGGCGTGCGCGTGGATGCGGCGCCCACTGCTGCTGTGGGCGAAGAAGTCCCGGTGGATGTTCATCTGGAAAccc                                                                                                                                                        <  1:756631/235‑1 (MQ=255)                                          cccGCGTTATCGCCTGGGCGCCGTCACCTTCGGTGGCGACACACCGCTGGACGAGGACCTGCTGCAGCGCATGGTGTCGTTCAAGCCGGGTACCCCTTACGACTCGGAACTGGTCGCAGAGCTGAACAACGACCTGCAATCGAGCGGCTATTTCGAAGGCGTGCGCGTGGATGCGGCGCCCACTGCTGCTGTGGGCGAAGAAGTCCCGGTGGATGTTCATCTGGAAACCCGTaaa                                                                                                                                                   <  1:908549/235‑1 (MQ=255)                                            cgcgTTATCGCCTGGGCGCCGTCACCTTCGGTGGCGACACACCGCTGGACGAGGACCTGCTGCAGCGCATGGTGTCGTTCAAGCCGGGTACCCCTTACGACTCGGAACTGGTCGCAGAGCTGAACAACGACCTGCAATCGAGCGGCTATTTCGAAGGCGTGCGCGTGGATGCGGCGCCCACTGCTGCTGTGGGCGAAGAAGTCCCGGTGGATGTTCATCTGGAAACCCGTAAACCa                                                                                                                                                >  1:486548/1‑236 (MQ=255)                                                  aTCGCCTGGGCGCCGTCACCTTCGGTGGCGACACACCGCTGGACGAGGACCTGCTGCAGCGCATGGTGTCGTTCAAGCCGGGTACCCCTTACGACTCGGAACTGGTCGCAGAGCTGAACAACGACCTGCAATCGAGCGGCTATTTCGAAGGCGTGCGCGTGGATGCGGCGCCCACTGCTGCTGTGGGCGAAGAAGTCCCGGTGGATGTTCATCTGGAAACCCGTAAACCACGCAc                                                                                                                                           >  1:888934/1‑235 (MQ=255)                                                        tGGGCGCCGTCACCTTCGGTGGCGACACACCGCTGGACGAGGACCTGCTGCAGCGCATGGTGTCGTTCAAGCCGGGTACCCCTTACGACTCGGAACTGGTCGCAGAGCTGAACAACGACCTGCAATCGAGCGGCTATTTCGAAGGCGTGCGCGTGGATGCGGCGCCCACTGCTGCTGTGGGCGAAGAAGTCCCGGTGGATGTTCATCt                                                                                                                                                                <  1:839789/208‑1 (MQ=255)                                                           gcgcCGTCACCTTCGGTGGCGACACACCGCTGGACGAGGACCTGCTGCAGCGCATGGTGTCGTTCAAGCCGGGTACCCCTTACGACTCGGAACTGGTCGCAGAGCTGAACAACGACCTGCAATCGAGCGGCTATTTCGAAGGCGTGCGCGTGGATGCGGCGCCCACTGCTGCTGTGGGCGAAGAAGTCCCGGTGGATGTTCATCTGGAAACCCGTAAACCACGCACCATGGGCCtt                                                                                                                                 <  1:529212/236‑1 (MQ=255)                                                             gcCGTCACCTTCGGTGGCGACACACCGCTGGACGAGGACCTGCTGCAGCGCATGGTGTCGTTCAAGCCGGGTACCCCTTACGACTCGGAACTGGTCGCAGAGCTGAACAACGACCTGCAATCGAGCGGCTATTTCGAAGGCGTGCGCGTGGATGCGGCGCCCACTGCTGCTGTGGGCGaagaagcc                                                                                                                                                                                 >  2:405570/1‑184 (MQ=255)                                                                gTCACCTTCGGTGGCGACACACCGCTGGACGAGGACCTGCTGCAGCGCATGGTGTCGTTCAAGCCGGGTACCCCTTACGACTCGGAACTGGTCGCAGAGCTGAACAACGACCTGCAATCGAGCGGCTATTTCGAAGGCGTGCGCGTGGATGCGGCGCCCACTGCTGCTGTGGGCGAAGAAGTCCCGGTGGATGTTCATCt                                                                                                                                                                <  1:667715/200‑1 (MQ=255)                                                                     cTTCGGTGGCGACACACCGCTGGACGAGGACCTGCTGCAGCGCATGTTGTCGTTCAAGCCGGGTACCCCTTACGACTCGGAACTGGTCGCAGAGCTGAACAACGACCTGCAATCGAGCGGCTATTTCGAAGGCGTGCGCGTGGATGCGGCGCCCACTGCTGCTGTGGGCGAAGAAGTCCCGGTGGATGTTCATCTGGAAAcc                                                                                                                                                         <  1:46521/202‑1 (MQ=255)                                                                       tCGGTGGCGACACACCGCTGGACGAGGACCTGCTGCAGCGCATGGTGTCGTTCAAGCCGGGTACCCCTTACGACTCGGAACTGGTCGCAGAGCTGAACAACGACCTGCAATCGAGCGGCTATTTCGAAGGCGTGCGCGTGGATGCGGCGCCCACTGCTGCTGTGGGCGAAGAAGTCCCGGTgg                                                                                                                                                                          <  2:186607/183‑1 (MQ=255)                                                                         ggTGGCGACACACCGCTGGACGAGGACCTGCTGCAGCGCATGGTGTCGTTCAAGCCGGGTACCCCTTACGACTCGGAACTGGTCGCAGAGCTGAACAACGACCTGCAATCGAGCGGCTATTTCGAAGGCGTGCGCGTGGATGCGGCGCCCACTGCTGCTGTGGGCGAAGAAGTCCCGGTGGATGTTCATCTGGAAACCCGTAAACCACGCACCATGGGCCTTGGCCTGGGCt                                                                                                                       <  2:787230/232‑1 (MQ=255)                                                                             gCGACACACCGCTGGACGAGGACCTGCTGCAGCGCATGGTGTCGTTCAAGCCGGGTACCCCTTACGACTCGGAACTGGTCGCAGAGCTGAACAACGACCTGCAATCGAGCGGCTATTTCGAAGGCGTGCGCGTGGATGCGGCGCCCACTGCTGCTgt                                                                                                                                                                                              >  2:535919‑M2/1‑155 (MQ=255)                                                                               gACACACCGCTGGACGAGGACCTGCTGCAGCGCATGGTGTCGTTCAAGCCGGGTACCCCTTACGACTCGGAACTGGTCGCAGAGCTGAACAACGACCTGCAATCGAGCGGCTATTTCGAAGGCGTGCGCGTGGATGCGGCGCCCACTGCTGCTgtgggcgccgcatccacgcgcacgccttcgaaatagccgctcgattgcaggtcgttgttcagctctgc                                                                                                                            >  2:635101‑M2/1‑153 (MQ=255)                                                                                              gAGGACCTGCTGCAGCGCATGGTGTCGTTCAAGCCGGGTACCCCTTACGACTCGGAACTGGTCGCAGAGCTGAACAACGACCTGCAATCGAGCGGCTATTTCGAAGGCGTGCGCGTGGATGCGGCGCCCACTGCTGCTGTGGGCGAAGAAGTCCCGGTGGATGTTCATCTGGAAACCCGTAAACCACGCACCATGGGCCTTGGCCTGGGCtt                                                                                                                      >  1:381127/1‑212 (MQ=255)                                                                                                   ccTGCTGCAGCGCATGGTGTCGTTCAAGCCGGGTACCCCTTACGACTCGGAACTGGTCGCAGAGCTGAACAACGACCTGCAATCGAGCGGCTATTTCGAAGGCGTGCGCGTGGATGCGGCGCCCACTGCTGCTGTGGGCGAAGAAGTCCCGGTGGATGTTCATCTGGAAACCCGTAAACCACGCACCATGGGCCTTGGCCTGGGCTTCTCGACCGACGTCGGGCCGCGCGGCaa                                                                                           >  1:515156/1‑234 (MQ=255)                                                                                                               cATGGTGTCGTTCAAGCCGGGTACCCCTTACGACTCGAAACTGGTCGCAGAGCTGAACAACGACCTGCAATCGAGCGGCTATTTCGAAGGCGTGCGCGTGGATGCGGCGCCCACTGCTGCTgtgggcgccgcatccacgcgcacgccttcgaaatagccgctcgattgcaggtcgttgttcagc                                                                                                                                 >  1:370803‑M2/1‑121 (MQ=255)                                                                                                                aTGGTGTCGTTCAAGCCGGGTACCCCTTACGACTCGGAACTGGTCGCAGAGCTGAACAACGACCTGCAATCGAGCGGCTATTTCGAAGGCGTGCGCGTGGATGCGGCGCCCACTGCTGCTGTGGGCGAAGAAGTCCCGGTGGATGTTCATCTGGAAACCCGTAAACCACGCACCATGGGCCTTGGCCTGGGCTTCTCGACCGACGTCGGGCCGCGCGGCAAGGCCAACTGGACCCg                                                                            >  1:773199/1‑236 (MQ=255)                                                                                                                  ggggtCGTTCAAGCCGGGTACCCCTTACGACTCGGAACTGGTCGCAGAGCTGAACAACGACCTGCAATCGAGCGGCTATTTCGAAGGCGTGCGCGTGGATGCGGCGCCCACTGCTGCTGTGGGCGAAGAAGTCCCGGTGGATGTTCATCTGGAAACCCGTAAACCACGCACCATGGGCCTTGGCCTGGGCTtctc                                                                                                                   <  2:711616/192‑1 (MQ=255)                                                                                                                          tCAAGCCGGGTACCCCTTACGACTCGGAACTGGTCGCAGAGCTGAACAACGACCTGCAATCGAGCGGCTATTTCGAAGGCGTGCGCGTGGATGCGGCGCCCACTGCTGCTGTGGGCGAAGAAGTCCCGGTGGATGTTCATCTGGAAACCCGTAAACCACGCACCATGGGCCTTGGCCTGGGCTTCTCGACCGACGTCGGGCCGCGCGGCAAGGCCAACTGGACCCGCCACTgg                                                                     >  2:546632/1‑233 (MQ=255)                                                                                                                                 gggTACCCCTTACGACTCGGAACTGGTCGCAGAGCTGAACAACGACCTGCAATCGAGCGGCTATTTCGAAGGCGTGCGCGTGGATGCGGCGCCCACTGCTGCTGTGGGCGAAGAAGTCCCGGTGGATGTTCATCTGGAAACCCGTAAACCACGCACCATGGGCCTTGGCCTGGGCTTCTCGACCGACGTCGGGCCGCGCGGCAAGGCCAACTGGACCCGCCACTGGGTCAACCcac                                                           >  1:309497/1‑236 (MQ=255)                                                                                                                                      ccccTTACGACTCGGAACTGGTCGCAGAGCTGAACAACGACCTGCAATCGAGCGGCTATTTCGAAGGCGTGCGCGTGGATGCGGCGCCCACTGCTGCTGTGGGCGAAGAAGTCCCGGTGGATGTTCATCTGGAAACCCGTAAACCACGCACCATGGGCCTTGGCATGGGCTtc                                                                                                                     >  2:298074/1‑173 (MQ=255)                                                                                                                                                    gAACTGGTCGCAGAGCTGAACAACGACCTGCAATCGAGCGGCTATTTCGAAGGCGTGCGCGTGGATGCGGCGCCCACTGCTGCTGTGGGCGAAGAAGTCCCGGTGGATGTTCATCTGGAAACCCGTAAACCACGCACCATGGGCCTTGGCCTGGGCTTCTCGACCGACGTCGGGCCGCGCGGCAAGGCCAACTGGACCCGCCACTGGGTCAACCCCCAAGGCCACAGCTATgg                                           >  2:752791/1‑233 (MQ=255)                                                                                                                                                     aaCTGGTCGCAGAGCTGAACAACGACCTGCAATCGAGCGGCTATTTCGAAGGCGTGCGCGTGGATGCGGCGCCCACTGCTGCTGTGGGCGAAGAAGTCCCGGTGGATGTTCATCTGGAAACCCGTAAACCACGCACCATGGGCCTTGGCCTGGGCTTCTcga                                                                                                                 >  2:855745/1‑162 (MQ=255)                                                                                                                                                      aCTGGTCGCAGAGCTGAACAACGACCTGCAATCGAGCGGCTATTTCGAAGGCGTGCGCGTGGATGCGGCGCCCACTGCTGCTGTGGGCGAAGAAGTCCCGGTGGATGTTCATCTGGAAACCCGTAAACCACGCACCATGGGCCTTGGCCTGGGCTTCTCGACCGACGTCGGGCCGCGCGGCAAGGCCAACTGGACCCGc                                                                           >  1:127071/1‑199 (MQ=255)                                                                                                                                                             gCAGAGCTGAACAACGACCTGCAATCGAGCGGCTATTTCGAAGGCGTGCGCGTGGATGCGGCGCCCACTGCTGCTGTGGGCGAAGAAGTCCCGGTGGATGTTCATCTGGAAACCCGTAAACCACGCACCATGGGCCTTGGCCTGGGCTTCTCGACCGACGTCGGGCCGCGCGGCAAGGcc                                                                                       >  1:1083133/1‑180 (MQ=255)                                                                                                                                                                              ccTGCAATCGAGCGGCTATTTCGAAGGCGTGCGCGTGGATGCGGCGCCCACTGCTGCTGTGGGCGAAGAAGTCCCGGTGGATGTTCATCTGGAAACCCGTAAACCACGCACCATGGGCCTTGGCCTGGGCTTCTCGACCGACGTCGGGCCGCGCGGCAAGGCCAACTGGAc                                                                               >  1:161446/1‑171 (MQ=255)                                                                                                                                                                                           ggCTATTTCGAAGGCGTGCGCGTGGATGCGGCGCCCACTGCTGCTGTGGGCGAAGAAGTCCCGGTGGATGTTCATCTGGAAACCCGTAAACCACGCACCATGGGCCTTGGCCTGGGCTTCTCGACCGACGTCGGGCCGCGCGGCAAGGCCAACTGGACCCGCCACTGGGTCAACCCACAAGGCCACAGCTATGGCTGGGAAACCGAACTGTCGGCCCCGCGCCAGAACGTCGGca  >  2:903207/1‑234 (MQ=255)                                                                                                                                                                                                 ttCGAAGGCGTGCGCGTGGATGCGGCGCCCACTGCTGCTGTGGGCGAAGAAGTCCCGGTGGATGTTCATCTGGAAACCCGTAAACCACGCACCATGGGCCTTGGCCTGGGCTTCTCGACCGACGTCGGGCCGCGCGGCAAGGCCAACTGGACCCGCCACTGGGTCAACCca                                                            <  1:546635/171‑1 (MQ=255)                                                                                                                                                                                                            gcgcGTGGATGCGGCGCCCCCTGCTGCTgtgggcgccgcatccacgcgcacgccttcgaaatagccgctcgattgcaggtcgttgttcagctctgcgaccagttc                                                                                                                   >  1:326583‑M2/1‑28 (MQ=255)                                                                                                                                                                                                                           gcCCACTGCTGCTGTGGGCGAAGAAGTCCCGGTGGATGTTCATCTGGAAACCCGTAAACCACGCACCATGGGCCTTGGCCTGGGCTTCTCGACCGACGTCGGGCcg                                                                                                   >  2:6766/1‑106 (MQ=255)                                                                                                                                                                                                                             ccACTGCTGCTGTGGGCGAAGAAGTCCCGGTGGATGTTCATCTGGAAACCCGTAAACCACGCCCCATGGGCCTTGGCCTGGGCTTCTCGACCGACGTCGGGCCGCGCGGCAAGGCCAACTGGACCCGCCACTGGGTCAACCCACAAg                                                        <  2:1012600/147‑1 (MQ=255)                                                                                                                                                                                                                             ccACTGCTGCTGTGGGCGAAGAAGTCCCGGTGGATGTTCATCTGGAAACCCGTAAACCACGCACCATGGGCCTTGGCCTGGGCTTCTCGACCGACGTCGGGCCGCGCGGCAAGGCCAACTGGACCCGCCACTGGGTCAACCCACAAg                                                        >  1:1012603/1‑147 (MQ=255)                                                                                                                                                                                                                                 tgctgctgTGGGCGAAGAAGTCCCGGTGGATGTTCATCt                                                                                                                                                                <  2:491318/39‑1 (MQ=255)                                                                                                                                                                                                                                 tgctgctgTGGGCGAAGAAGTCCCGGTGGATGTTCATCt                                                                                                                                                                <  2:769559/39‑1 (MQ=255)                                                                                                                                                                                                                                       |                                                                                                                                                                                               CAAGCCGGTGTGGCGGATATCGAACTGGTCTACCAGAGTGGCCCGCGTTATCGCCTGGGCGCCGTCACCTTCGGTGGCGACACACCGCTGGACGAGGACCTGCTGCAGCGCATGGTGTCGTTCAAGCCGGGTACCCCTTACGACTCGGAACTGGTCGCAGAGCTGAACAACGACCTGCAATCGAGCGGCTATTTCGAAGGCGTGCGCGTGGATGCGGCGCCCACTGCTGCTGTGGGCGAAGAAGTCCCGGTGGATGTTCATCTGGAAACCCGTAAACCACGCACCATGGGCCTTGGCCTGGGCTTCTCGACCGACGTCGGGCCGCGCGGCAAGGCCAACTGGACCCGCCACTGGGTCAACCCACAAGGCCACAGCTATGGCTGGGAAACCGAACTGTCGGCCCCGCGCCAGAACGTCGGCC  >  AE015451/3289503‑3289923

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.