New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	3296619 =	41 (0.710)	4 (0.070)	4/328	NT	9.2%	coding (256/492 nt)	PP_2898	conserved exported protein of unknown function
	?	AE015451	3296638 =	40 (0.720)					coding (237/492 nt)	PP_2898	conserved exported protein of unknown function

ACCCACGCCGGAGGCACCATGTACAAACCCCTGCTGTTCGCATCGCTGTTACTGACCCCGCTCTCCCTTCATGCACTGGACACCCAGCAGACGCCGACCGAACACCTGCTCGAACTGGGCCGCGAGTTGGCCACCCATGCCGGTGCCAGCCAATGGCAACAACTGTGGCAACGCGTACGCCAGGCCGGCTACCTGCAGACCGACGCCGCACCGGTACATTTCAGCGGGCCCACAGCCCGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/3296859‑3296619 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccgctGAAATGTACCGGTGCGGCGTCGGTCTGCAGGTAGCCGGCCTGGCGTACGCGTTGCCACAGTTGTTGCCATTGGCTGGCACCGGCATGGGTGGCCAACTCGCGGCCCAGTTCGAGCAGGTGTTCGGTCGGCGTCTGCTGGGTGTCCAGTGCATGAAGGGAGAGCGGGGTCAGTAACAGCGATGCGAACAGCAGGGGTTTGTACATGGTGCCTCCGGCGTGGGTGCTAGGAAGCC  >  AE015451/3296638‑3296870                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ACCCACGCCGGAGGCACCATGTACAAACCCCTGCTGTTCGCATCGCTGTTACTGACCCCGCTCTCCCTTCATGCACTGGACACCCAGCAGACGCCGACCGAACACCTGCTCGAACTGGGCCGCGAGTTGGCCACCCATGCCGGTGCCAGCCAATGGCAACAACTGTGGCAACGCGTACGCCAGGCCGGCTACCTGCAGACCGACGCCGCACCGGTACATTTCAGCGGGCCCACAGC                                                                                                                                                                                                                                                <  1:987606/236‑1             GGCACCATGTACAAACCCCTGCTGTTCGCATCGCTGTTACTGACCCCGCTCTCCCTTCATGCACTGGACACCCAGCAGACGCCGACCGAACACCTGCTCGAACTGGGCCGCGAGTTGGCCACCCATGCCGGTGCCAGCCAATGGCAACAACTGTGGCAACGCGTACGCCAGGCCGGCTACCTGCAGACCGACGCCGCACCGGTACATTTCAGCGGGCCCACAGCCCGCTGAAATG                                                                                                                                                                                                                                     <  1:713177/235‑1                                                                                                GACCGAACACCTGCTCGAACTGGGCCGCGAGTTGGCCACCCATGCCGGTGCCAGCCAATGGCAACAACTGTGGCAACGCGTACGCCAGGCCGGCTACCTGCAGACCGACGCCGCACCGGTACATTTCAGCGGGCCCACAGC                                                                                                                                                                                                                                                <  2:796944/141‑1                                                                                                                           CGAGGTGGCCACCCATGCCGGTGCCAGCCAATGGCAACAACTGTGGCAACGCGTACGCCAGGCCGGCTACCTGCAGACCGACGCCGCACCGGCACATTTCAGCGCGCCCACAGCCCcc                                                                                                                                                                                                                                            >  2:268528/1‑116                                                                                                                                                        AATGGCAACAACTGTGGCAACGCGTACGCCAGGCCGGCTACCTGCAGACCGACGCCGCACCGGTACATTTCAGCGGGCCCACAGCCCGCTGAAATGTACCGGTGCGGCGTCGGTC                                                                                                                                                                                                                  >  1:529906/1‑115                                                                                                                                                        AATGGCAACAACTGTGGCAACGCGTACGCCAGGCCGGCTACCTGCAGACCGACGCCGCACCGGTACATTTCAGCGGGCCCACAGCCCGCTGAAATGTACCGGTGCGGCGTCGGTC                                                                                                                                                                                                                  <  2:529903/115‑1                                                                                                                                                                                          CGGCTACCTGCAGACCGACGCCGCACCGGTACATTTCAGCGGGCCCACAGCCCGCTGAAATGTACCGGTGCGGCGTCGGTCTGCAGGTAGCCGGCCTGGCGTACGCGTTGCCACAGTTGTTGCCATTGGCTGGCACCGGCATGGGTGGCCAACTCGCGGCCCAGTTCGAGCAGGTGTTCGGTCGGCGTCTGCTGGGTGTCCAGTGCATGAAGGGAGAGCGGGGTCAGTAA                                                             >  1:616490/1‑230                                                                                                                                                                                                                                               GCTGAAATGTGCCGGTGCGGCGTCGGTCTGCAGGTAGCCGGCCTGGCGTACGCGTTGCCACAGTTGTTGCCATTGGCTGGCACCGGCATGGGTGGCCAACTCGCGGCCCAGTTCGAGCAGGTGTTCGGTCGGCGTCTGCTGGGTGTCCAGTGCATGAAGGGAGAGCGGGGTCAGTAACAGCGATGCGAACAGCAGGGGTTTGTACATGGTGCCTCCGGCGTGGGTGCTAGGAAGCC  <  1:224061/236‑1                                                                                                                                                                                                                                               GCTGAAATGTACCGGTGCGGCGTCGGTCTGCAGGTAGCCGGCCTGGCGTACGCGTTGCCACAGTTGTTGCCATTGGCTGGCACCGGCATGGGTGGCCAACTCGCGGCCCAGTTCGAGCAGGTGTTCGGTCGGCGTCTGCctg                                                                                                >  2:346241/1‑139                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ACCCACGCCGGAGGCACCATGTACAAACCCCTGCTGTTCGCATCGCTGTTACTGACCCCGCTCTCCCTTCATGCACTGGACACCCAGCAGACGCCGACCGAACACCTGCTCGAACTGGGCCGCGAGTTGGCCACCCATGCCGGTGCCAGCCAATGGCAACAACTGTGGCAACGCGTACGCCAGGCCGGCTACCTGCAGACCGACGCCGCACCGGTACATTTCAGCGGGCCCACAGCCCGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/3296859‑3296619 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccgctGAAATGTACCGGTGCGGCGTCGGTCTGCAGGTAGCCGGCCTGGCGTACGCGTTGCCACAGTTGTTGCCATTGGCTGGCACCGGCATGGGTGGCCAACTCGCGGCCCAGTTCGAGCAGGTGTTCGGTCGGCGTCTGCTGGGTGTCCAGTGCATGAAGGGAGAGCGGGGTCAGTAACAGCGATGCGAACAGCAGGGGTTTGTACATGGTGCCTCCGGCGTGGGTGCTAGGAAGCC  >  AE015451/3296638‑3296870

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.