New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 3490603	59 (1.020)	4 (0.070)	4/324	NT	6.4%	coding (788/2637 nt)	clpV	Protein ClpV1
	?	AE015451	= 3490689	62 (1.140)					coding (702/2637 nt)	clpV	Protein ClpV1

AACTCGCCACGGGCCAGGGCCGGCTTGAGCAGGTTGGCGGCATCGTTCTGCCCGGCCTGGCCGCCGGAGCCGATCAGGGTGTGGGCTTCGTCGATGAACAGGATGATCGGGTGCAGGCTGCGCTTGACCTCTTCGATCACAGCCTTGAGGCGGTTCTCGAACTCGCCCTTGACCCCGGCGCCGGCCTGTAACAGGCCCAGGTCGAGGGTGTGCAGGGCAACGTCCTTGAGCACCGCCGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/3490363‑3490603 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgccggcaGAACAACCCGATCCTCACGGGCGAAGCCGGGGTCGGCAAAACCGCCGTGGTCGAAGGCCTGGCGCTGCGCATCGCCCAGGGTGACGTGCCGGCGGTGCTCAAGGACGTTGCCCTGCACACCCTCGACCTGGGCCTGTTACAGGCCGGCGCCGGGGTCAAGGGCGAGTTCGAGAACCGCCTCAAGGCTGTGATCGAAGAGGTCAAGCGCAGCCTGCACCCGATCATCCTGTTC  <  AE015451/3490689‑3490458                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           AACTCGCCACGGGCCAGGGCCGGCTTGAGCAGGTTGGCGGCATCGTTCTGCCCGGCCTGGCCGCCGGAGCCGATCAGGGTGTGGGCTTCGTCGATGAACAGGATGATCGGGTGCAGGCTGCGCTTGACCTCTTCGATCACAGCCTTGAGGCGGTTCTCGAACTCGCCCTTGACCCCGGCGCCGGCCTGTAACAGGCCCAGGTCGAGGGTGTGCAGGGCAACGTCCTTGAGCACCG                                                                                                                                                                                                                                                <  1:635474/235‑1                                                                     GCCGATCAGGGTGTGGGCTTCGTCGATGAACAGGATGATCGGGTGCAGGCTGCGCTTGACCTCTTCGATCACAGCCTTGAGGCGGTTCTCGAACTCGCCCTTGACCCCGGCGCCGGCCTGTAACAGGCCCAGGTCGAGGGTGTGCAGGGCAACGTCCTTGAGCACCGCCGGCAGAACAACCCGATCCTCACGGGCGAAGCCGGGGTCGGCAAAACCGCCGTGGTCGAAGGCCTGGC                                                                                                                                                                           <  1:26175/236‑1                                                                                                                            TTGACCTCTTCGATCACAGCCTTGAGGCGGTTCTCGAACTCGCCCTTGACCCCGGCGCCGGCCTGTAACAGGCCCAGGCCGAGGGTGGGCAGGGCAACGTCCTTTAGCACCGCCGGC                                                                                                                                                                                                                                           >  1:269990/1‑117                                                                                                                                                                                                                    GCAGGGCAACGTCCTTGAGCACCGCCGGCAGAACAACCCGATCCTCACGGGCGAAGCCGGGGTCGGCAAAACCGCCGTGGTCGAAGGCCTGGCGCTGa                                                                                                                                                                      >  2:907796/1‑97                                                                                                                                                                                                                          CAACGTCCTTGAGCACCGCCGGCAGAACAACCCGATCCTCACGGGCGAAGCCGGGGTCGGCAAAACCGCCGTGGTCGAAGGCCTGGCGCTGCGCATCGCCCAGGGTGACGTGCCGGCGGTGCTCAAGGACGTTGCCCTGCACACCCTCGACCTGGGCCTGTTACAGGCCGGCGCCGGGGTCAAGGGCGAGTTCGAGAACCGCCTCAAGGCTG                                              >  2:1019365/1‑212                                                                                                                                                                                                                              GTCCTTGAGCACCGCCGGCAGAACAACCCGATCCTCACGGGCGAAGCCGGGGTCGGCAAAACCGCCGTGGTCGAAGGCCTGGCGCTGCGCATCGCCCAGGGTGACGTGCCGGCGGTGCTCAAGGACGTTGCCCTGCACACCCTCGACCTGGGCCTGTTACAGGCCGGCGCCGGGGT                                                                              >  2:608431/1‑176                                                                                                                                                                                                                                          CGCGGGCAAAACACCCCGCCCCTCACGGGCGAAGCCGGGGTCGGCAAAACCGCCGTGGTCGAAGGCCTGGCGCTGCGCATCGCCCAGGGTGACGTGCCGGCGGTGCTCAAGG                                                                                                                                  <  2:235099/112‑1                                                                                                                                                                                                                                          CGCCGGCAGAACAACCCGATCCTCACGGGCGAAGCCGGGGTCGGCAAAACCGCCGTGGTCGAAGGCCTGGCGCTGCGCATCGCCCAGGGTGACGGGCCGGCGGTGCTCAAGGACGTTGCCCTGCACACCCTCGACCTTGGCCTGTTACAGGCCGGCGCCGGGGGCAAGGGC                                                                       >  1:324655/1‑171                                                                                                                                                                                                                                             CGGCAGAACAACCCGATCCTCACGGGCGAAGCCGGGGTCGGCAAAACCGCCGTGGTCGAAGGCCTGGCGCTGCGCATCGCCCAGGGTGACGTGCCGGCGGTGCTCAAGGACGTTGCCCTGCACACCCTCGACCTGGGCCTGTTACAGGCCGGCGCCGGGGTCAAGGGCGAGTTCGAGAACCGCCTCAAGGCTGTGATCGAAGAGGTCAAGCGCAGCCTGCACCCGATCATCCTGT    <  1:926453/235‑1                                                                                                                                                                                                                                             CGGCAGAACAACCCGATCCTCACGGGCGAAGCCGGGGTCGGCAAAACCGCCGTGGTCGAAGGCCTGGCGCTGCGCATCGCCCAGGGTGACGTGCCGGCGGCGCTCAAGGACGCTGCCCTGCACACCCTCGAC                                                                                                           >  1:129202/1‑132                                                                                                                                                                                                                                               GCAGAACAACCCGATCCTCACGGGCGAAGCCGGGGTCGGCAAAACCGCCGTGGTCGAAGGCCTGGCGCTGCGCATCGCCCAGGGTGACGTGCCGGCGGTGCTCAAGGACGTTGCCCTGCACACCCTCGACCTGGGCCTGTTACAGGCCGGCGCCGGGGTCAAGGGCGAGTTCGAGAACCGCCTCAAGGCTGTGATCGAAGAGGTCAAGCGCAGCCTGCACCCGATCATCCTGTTC  >  1:600968/1‑235                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           AACTCGCCACGGGCCAGGGCCGGCTTGAGCAGGTTGGCGGCATCGTTCTGCCCGGCCTGGCCGCCGGAGCCGATCAGGGTGTGGGCTTCGTCGATGAACAGGATGATCGGGTGCAGGCTGCGCTTGACCTCTTCGATCACAGCCTTGAGGCGGTTCTCGAACTCGCCCTTGACCCCGGCGCCGGCCTGTAACAGGCCCAGGTCGAGGGTGTGCAGGGCAACGTCCTTGAGCACCGCCGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/3490363‑3490603 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgccggcaGAACAACCCGATCCTCACGGGCGAAGCCGGGGTCGGCAAAACCGCCGTGGTCGAAGGCCTGGCGCTGCGCATCGCCCAGGGTGACGTGCCGGCGGTGCTCAAGGACGTTGCCCTGCACACCCTCGACCTGGGCCTGTTACAGGCCGGCGCCGGGGTCAAGGGCGAGTTCGAGAACCGCCTCAAGGCTGTGATCGAAGAGGTCAAGCGCAGCCTGCACCCGATCATCCTGTTC  <  AE015451/3490689‑3490458

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.