New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 3779614	48 (0.830)	4 (0.070)	4/334	NT	7.6%	coding (65/1575 nt)	nikA	nickel ABC transporter periplasmic binding protein
	?	AE015451	= 3779631	51 (0.910)					coding (82/1575 nt)	nikA	nickel ABC transporter periplasmic binding protein

CCTGGTAAACGAAAGCCCGCCCTGTGGGGCCTCCTTCTTCTTGCTGCGTGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/3779562‑3779614 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcGGCTGGCCGGCGCAGCAGCGCACGCAGCAAGAAGAAGGAGGCCCCACAGGGCGGGCTTTCGTTTACCAGGCTGCTGCTTCACACTGCGTCCCCCACTTTCACGGAGGCCGTAGGCTAAAGTGTGGTGGGTATGATGTCTACGTGAAATCATCTTACCGGAAGTTACAGAATGCAACGAATCACCATCACGCTGGATGAAGAGCTGCTCGACGTCATCGATCGGCGGGTGGC  <  AE015451/3779631‑3779401                                                                                                                                                                                                                                                                                              CCTGGTAAACGAAAGCCCGCCCTGTGGGGCCTCCTTCTTCTTGCTGCGTGCGCGGCTGGCCGGCGCAGCAGCGCACGCAGCAAGAAGAAGGAGGCCCCACAGGGCGGGCTTTCGTTTACCAGGCTGCGGCTTCACACTGCGTCCCCCACTTTCACGGAGGCCGT                                                                                                                          >  2:242644/1‑164   TGGTAAACGAAAGCCCGCCCTGTGGGGCCTCCTTCTTCTTGCTGCGTGCGCGGCTGGCCGGCGCAGCAGCGCACGCAGCAAGAAGAAGGAGGCCCCACAGGGCGGGCTTTCGTTTACCAGGCTGCTGCTTCACACTGCGTCCCCCACTTTCACGGAGGCCGTAGGCTAAAGTGTGGTGGGTATGATGTCTACGTGAAATCATCTTACCGGAAGTTACAGAATGCAACGAATCACC                                                 >  1:386592/1‑235                     CCTGTGGGGCCTCCTTCTTCTTGCTGCGTGCGCGGCTGGCCGGCGCAGCAGCGCACGCAGCAAGAAGAAGGAGGCCCCACAGGGCAGGCTTTCGTTTACCAGGCTGCTGCTTCACACTGCGTCCCCCACTTTCACGGAGGCCGTAGGCTAAAGTGGTGTGG                                                                                                         >  2:726798/1‑161                                           GCTGCGTGCGCGGCTGGCCGGCGCAGCAGCGCACGCAGCAAGAAGAAGGAGGCCCCACAGGGCGGGCTTTCGTTTACCAGGCTGCTGCTTCACACTGCGTCCCCCACTTTCACGGAGGCCGTAGGCTAAAGTGTGGTGGGTATGATGTCTACGTGAAATC                                                                                    >  1:581017/1‑160                                                 TGCGCGGCTGGCCGGCGCAGCAGCGCACGCAGCAAGAAGAAGGAGGCCCCACAGGGCGGGCTTTCGTTTACCAGGCTGCTGCTTCACACTGCGTCCCCCACTTTCACGGAGGCCGTAGGCTAAAGTGTGGTGGGTATGATGTCTACGTGAAATCATCTTACCGGAAGTTACAGAATGCAACGAATCACCATCACGCTGGATGAAGAGCTGCTCGACGTCATCGATCGGCGGGTGGC  >  1:476708/1‑236                                                  GCGCGGCTGGCCGGCGCAGCAGCGCACGCAGCAAGAAGAAGGAGGCCCCACAGGGCGGGCTTTCGTTTACCAGGCTGCTGCTTCACACTGCGTCCCCCACTTTCACGGAGGCCGTAGGCTAAAGTGTGGTGGGTATGATGTCTACGTGAAATCATCTTACCGGAAGTTACAGAATACAACGAATCACCATCACGCTGGATGAAGAGCTGCTCGACGTCATCGATCGGCGGGTGGC  <  1:1042711/235‑1                                                                                                                                                                                                                                                                                              CCTGGTAAACGAAAGCCCGCCCTGTGGGGCCTCCTTCTTCTTGCTGCGTGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/3779562‑3779614 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcGGCTGGCCGGCGCAGCAGCGCACGCAGCAAGAAGAAGGAGGCCCCACAGGGCGGGCTTTCGTTTACCAGGCTGCTGCTTCACACTGCGTCCCCCACTTTCACGGAGGCCGTAGGCTAAAGTGTGGTGGGTATGATGTCTACGTGAAATCATCTTACCGGAAGTTACAGAATGCAACGAATCACCATCACGCTGGATGAAGAGCTGCTCGACGTCATCGATCGGCGGGTGGC  <  AE015451/3779631‑3779401

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.