New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	3794442 =	40 (0.690)	5 (0.090)	5/326	NT	11.0%	coding (81/1191 nt)	PP_3355	Beta‑ketothiolase
	?	AE015451	3794568 =	43 (0.780)					intergenic (‑46/+2)	PP_3355/fcs	Beta‑ketothiolase/feruloyl‑CoA‑synthetase

ACAAGGGCTCGATCAATCAGCGCGCCGTGCTGCAGCGGCGCGCCGCTCAGGTCGAGGCGCTGTACCGTGGCGAAGACCCCGACGCATTGCACGCCAAGGTGCGGCCTTGAGTGCGGCCGGGCTGTGCACCGTCTTCGAGGACACGGCCATCGTCCAGATGGTGCGCACGCCCTGGGTCGACCTGGGTGGCGCATTGGCCGCGATCTCGCCCATCGACCTGGGCATTCAGGCCGGCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/3794679‑3794442 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccggccgcACTCAAGGCCGCACCTTGGCGTGCAATGCGTCGGGGTCTTCGCCACGGTACAGCGCCTCGACCTGAGCGGCGCGCCGCTGCAGCACGGCGCGCTGATTGATCGAGCCCTTGTCGGTGATTTCACCGGCGTCGATCGACGGCGGCTCGGCCAGCAGCGACAGCCATTCGATACGGCTGGCGTTGCCTTGGGCATCGCGGTTCAAGCGCTCCAGCCAGTCAGCGAACCAACTGCG  >  AE015451/3794568‑3794800                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ACAAGGGCTCGATCAATCAGCGCGCCGTGCTGCAGCGGCGCGCCGCTCAGGTCGAGGCGCTGTACCGTGGCGAAGACCCCGACGCATTGCACGCCAAGGTGCGGCCTTGAGTGCGGCCGGGCTGTGCACCGTCTTCGAGGACACGGCCATCGTCCAGATGGTGCGCACGCCCTGGGTCGACCTGGGTGGCGCATTGGCCGCGATCTCGCCCATCGACCTGGGCATTCAGGCCGGCC                                                                                                                                                                                                                                             <  1:171031/236‑1    AGGGCTCGATCAATCAGCGCGCCGTGCTGCAGCGGCGCGCCGCTCAGGTCGAGGCGCTGTACCGTGGCGAAGACCCCGACGCATTGCACGCCAAGGTGCGGCCTTGAGTGCGGCCGGGCTGTGCACCGTCTTCGAGGACACGGCCATCGTCCAGATGGTGCGCACGCCCTGGGTCGACCTGGGTGGCGCATTGGCCGCGATCTCGCCCATCGACCTGGGCATTCAGGCCGGCC                                                                                                                                                                                                                                             <  2:911098/233‑1                           GTGCTGCAGCGGCGCGCCGCTCAGGTCGAGGCGCTGTACCGTGGCGAAGACCCCGACGCATTGCACGCCAAGGTGCGGCCTTGAGTGCGGCCGGGCTGTGCCCCGTCTTCGAGGACACGGCCATCGTCCAGATGGTGCGCACGCCCTGGGTCGACCTGGGTGGCGCATTGGCCGCGATCTCGCCCATCGACCTGGGCATTCAGGCCGGCC                                                                                                                                                                                                                                             <  1:105980/210‑1                                 CAGCGGCGCGCCGCTCAGGTCGAGGCGCTGTACCGTGGCGAAGACCCCGACGCATTGCACGCCAAGGTGCGGCCTTGAGTGCGGCCGGGCTGTGCACCGTCTTCGAGGACACGGCCATCGTCCAGATGGTGCGCACGCCCTGGGTCGACCTGGGTGGCGCATTGGCCGCGATCTCGCCCATCGACCTGGGCATTCAGGCCGGCCGCAC                                                                                                                                                                                                                                         <  1:468108/208‑1                                     GGCGCGCCGCTCAGGTCGAGGCGCTGTCCCGTGGCGAAGCCCCCGACGCATTGCACGCCAAGGTGCGGCCTTGAGTGCGGCCGGGCTGTGCACCGTCTTCGAGGACACGGCCATCGTCCAGATGGTGCGCACGCCCTGGGTCGACCTGGGTGGCGCATTGGCCGCGATCTCGCCCATCGACCTGGGCATTCAGGCCGGCC                                                                                                                                                                                                                                             <  1:107524/200‑1                                        GCGCCGCTCAGGTCGAGGCGCTGTACCGTGGCGAAGCCCCCGACGCATTGCACGCCAAGGTGCGGCCTTGAGTGCGGCCGGGCTGTGCACCGTCTTCGAGGACACGGCCATCGTCCAGATGGTGCGCACGCCCTGGGTCGACCTGGGTGGCGCATTGGCCGCGATCTCGCCCATCGACCTGGGCATTCAGGCCGGCCGCACTCAAGGCCGCACCTTGGCGTGCAATGCGTCGGGGT                                                                                                                                                                                                      <  1:183051/236‑1                                        GCGCCGCTCAGGTCGAGGCGCTGTACCGTGGCGAAGACCCCGCCGCATTGCACGCCAAGGTGCGGCCTTGAGTGCGGCCGGGCTGTGCACCGTCTTCGAGGACACGGCCATCGTCCAGATGGTGCGCACGCCCTGGGTCGACCTGGGTGGCGCATTGGCCGCGATCTCGCCCATCGACCTGGGCATTCAGGCCGGCC                                                                                                                                                                                                                                             <  1:98990/197‑1                                         CGCCGCTCAGGTCGAGGCGCTGTACCGTGGCGAAGACCCCGACGCATTGCACGCCAAGGTGCGGCCTTGAGTGCGGCCGGGCTGTGCACCGTCTTCGAGGACACGGCCATCGTCCAGATGGTGCGCACGCCCTGGGTCGACCTGGGTGGCGCATTGGCCGCGATCTCGCCCATCGACCTGGGCATTCAGGCCGGCC                                                                                                                                                                                                                                             >  2:871889/1‑196                                         CGCCGCTCAGGTCGAGGCGCTGTACCGTGGCGAAGACCCCGACGCATTGCACGCCAAGGTGCGGCCTTGAGTGCGGCCGGGCTGTGCACCGTCTTCGAGGACACGGCCATCGTCCAGATGGTGCGCACGCCCTGGGTCGACCTGGGTGGCGCATTGGCCGCGATCTCGCCCATCGACCTGGGCATTCAGGCCGGCC                                                                                                                                                                                                                                             <  1:871892/196‑1                                          GCCGCTCAGGTCGAGGCGCTGTACCGTGGCGAAGACCCCGACGCATTGCACGCCAAGGTGCGGCCTTGAGTGCGGCCGGGCTGTGCACCGTCTTCGAGGACACGGCCATCGTCCAGATGGTGCGCACGCCCTGGGTCGACCTGGGTGGCGCATTGGCCGCGATCTCGCCCATCGACCTGGGCATTCAGGCCGGCC                                                                                                                                                                                                                                             <  2:362335/195‑1                                                                   GTGGCGAAGAGCCCGACGCATTGCACGCCAAGGTGCGGCCTTGAGTGCGGCCGGGCTGTGCACCGTCTTCGAGGACACGGCCATCGTCCAGATGGTGCGCACGCCCTGGGTCGACCTGGGTGGCGCATTGGCCGCGATCTCGCCCATCAACCTGGGCATTCAGGC                                                                                                                                                                                                                                                  <  1:369406/165‑1                                                                            ACCCCGACGCATTGCACGCCAAGGTGCGGCCTTGAGTGCGGCCGGGCTGTGCACCGTCTTCGAGGACACGGCCATCGTCCAGATGGTGCGCACGCCCTGGGTCGACCTGGGTGGCGCATTGGCCGCGATCTCGCCCATCGACCTGGGCATTCAGGCCGGCC                                                                                                                                                                                                                                             <  2:691212/161‑1                                                                                     CATTGCACGCCAAGGTGCGGCCTTGAGTGCGGCCGGGCTGTGCACCGTCTTCGAGGACACGGCCATCGTCCAGATGGTGCGCACGCCCTGGGTCGACCTGGGTGGCGCATTGGCCGCGATCTCGCCCATCGACCTGGGCATTCAGGCCGGCC                                                                                                                                                                                                                                             <  2:1078777/152‑1                                                                                                        GCCTTGAGTGCGGCCGGGCTGTGCACCGTCTTCGAGGACACGGCCATCGTCCAGATGGTGCGCACGCCCTGGGTCGACCTGGGTGGCGCATTGGCCGCGATCTCGCCCATCGACCTGGGCATTCAGGCCGGCC                                                                                                                                                                                                                                             <  2:895861/133‑1                                                                                                                                      TTCGAGGACACGGCCATCGTCCAGATGGTGCGCACGCCCTGGGTCGACCTGGGTGGCGCATTGGCCGCGATCTCGCCCATCGACCTGGGCATTCAGGCCGGCCGCACTCAAGGCCGCACCTTGGCGTGCAATGCGTCGGGGTCTTCGCCACGGTACAGCGCCTCGACCTGAGCGGCGCGCCGC                                                                                                                                                             >  2:73191/1‑183                                                                                                                                                 GGCCATCGTCCAGATGGTGCGCACGCCCTGGGTCGACCTGGGTGGCGCATTGGCCGCGATCTCGCCCATCGACCTGGGCATTCAGGCCGGCCGCACTCAAGGCCGCACCTTGGCGTGCAATGCGTCGGGGTCTTCGCCACGGTACAGCGCCTCGACCTGAGCGGCGCGCCGCTGCAG                                                                                                                                                        >  2:505593/1‑177                                                                                                                                                 GGCCATCGTCCAGATGGTGCGCACGCCCTGGGTCGACCTGGGTGGCGCATTGGCCGCGATCTCGCCCATCGACCTGGGCATTCAGGCCGGCC                                                                                                                                                                                                                                             <  2:601137/92‑1                                                                                                                                                 GGCCATCGTCCAGATGGTGCGCACGCCCTGGGTCGACCTGGGTGGCGCATTGGCCGCGATCTCGCCCATCGACCTGGGCATTCAGGCCGGCC                                                                                                                                                                                                                                             >  1:601140/1‑92                                                                                                                                                                 gcGCGCACGCCCTGGGTCGACCTGGGTGGCGCATTGGCCGCGATCTCGCCCATCGGCCTGGGCATTCAGGCCGGCCGCACTCAAGGCCGCACCTTGGCGTGCAATGCGTCGGGGTCTTCGCCACGGTACAGC                                                                                                                                                                                     <  1:933578/130‑1                                                                                                                                                                 GTGCGCACGCCCTGGGTCGACCTGGGTGGCGCATTGGCCGCGATCTCGCCCATCGACCTGGGCATTCAGGCCGGCC                                                                                                                                                                                                                                             <  2:151111/76‑1                                                                                                                                                                                                 ATTGGCCGCGATCTCGCCCATCGACCTGGGCATTCAGGCCGGCCGCACTCAAGGCCGCACCTTGGCGTGCAATGCGTCGGGGTCTTCGCCACGGTACAGCGCCTCGACCTGAGCGGCGCGCCGCTGCAGCACGGCGCGCTGATTGATCGAGCCCTTGTCGGTGATTTCACCGGCGTCGATCGACGGCGGCTCGGCCAGCAGCGACAGCCATTCGATACGGCTGGCGTTGCCTTGGG                                             <  1:73193/236‑1                                                                                                                                                                                                                                         GGCCGCACTCAAGGCCGCACCTTGGCGTGCAATGCGTCGGGGTCTTCGCCACGGTACAGCGCCTCGACCTGAGCGGCGCGCCGCTGCAGCACGGCGCGCTGATTGATCGAGCCCTTGTCGGTGATTTCACCGGCGTCGATCGACGGCGGCTCGGCCAGCAGCG                                                                              >  2:918617/1‑163                                                                                                                                                                                                                                            CGCACTCAAGGCCGCACCTTGGCGTGCAATGCGTCGGGGTCTTCGCCACGGTACAGCGCCTCGACCTGAGCGGCGCGCCGCTGCAGCACGGCGCGCTGATTGATCGAGCCCTTGTCGGTGATTTCACCGGCGTCGATCGACGGCGGCTCGGCCAGCAGCGACAGCCATTCGATACGGCTGGCGTTGCCTTGGGCATCGCGGTTCAAGCGCTCCAGCCAGTCAGCGAACCAACTGCG  <  1:458850/236‑1                                                                                                                                                                                                                                            CGCACTCAAGGCCGCACCTTGGCGTGCAATGCGTCGGGGTCTTCGCCACGGTACAGCGCCTCGACCTGAGCGGCGCGCCGCTGCAGCACGGCGCGCTGATTGATCGAGCCCTTGTCGGTGATTTCACCGGCGTCGATCGACGGCGGCTCGGCCAGCAGCGACAGCCATTCGATACGGCTGGCGTTGCCTTGGGCATCGCGGTTCAAGCGCTCCAGCCAGTCAG               >  2:655203/1‑223                                                                                                                                                                                                                                            CGCACTCAAGGCCGCACCTTGGCGTGCAATGCGTCGGGGTCTTCGCCACGGTACAGCGCCTCGACCTGAGCGGCGCGCCGCTGCAGCACGGCGCGCTGATTGATCGAGCCCTTGTCGGTGATTTCACCGGCGTCGATCGACGGCGGCTCGGCCAGCAGCGACAGCCATTCGATACGGCTGGCGTTGCCTTGGGCATCGCGGTTCAAGCGCTCCAGCCAGT                  >  2:795963/1‑220                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ACAAGGGCTCGATCAATCAGCGCGCCGTGCTGCAGCGGCGCGCCGCTCAGGTCGAGGCGCTGTACCGTGGCGAAGACCCCGACGCATTGCACGCCAAGGTGCGGCCTTGAGTGCGGCCGGGCTGTGCACCGTCTTCGAGGACACGGCCATCGTCCAGATGGTGCGCACGCCCTGGGTCGACCTGGGTGGCGCATTGGCCGCGATCTCGCCCATCGACCTGGGCATTCAGGCCGGCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/3794679‑3794442 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccggccgcACTCAAGGCCGCACCTTGGCGTGCAATGCGTCGGGGTCTTCGCCACGGTACAGCGCCTCGACCTGAGCGGCGCGCCGCTGCAGCACGGCGCGCTGATTGATCGAGCCCTTGTCGGTGATTTCACCGGCGTCGATCGACGGCGGCTCGGCCAGCAGCGACAGCCATTCGATACGGCTGGCGTTGCCTTGGGCATCGCGGTTCAAGCGCTCCAGCCAGTCAGCGAACCAACTGCG  >  AE015451/3794568‑3794800

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.