New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	3796487 =	44 (0.760)	3 (0.050)	3/324	NT	6.7%	intergenic (‑34/+58)	fcs/vdh	feruloyl‑CoA‑synthetase/vanillin dehydrogenase
	?	AE015451	3796514 =	42 (0.770)					intergenic (‑61/+31)	fcs/vdh	feruloyl‑CoA‑synthetase/vanillin dehydrogenase

CCGACCGTTCACGATGAAGCGCAGATGCCGTTTGGCGGGGTCAAGTCCAGCGGCTATGGCAGCTTCGGCAGCCGCACGGCCATCGATCAGTTCACCCAGTTGCGCTGGGTCACCCTCCAGCACGGCCCGCGTCACTATCCCATCTAGCCGCGGCAGGCCCAGACCTCCGGCAAGATGACCGCCGCCCCGTCATATCGGGCGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/3796691‑3796487 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggcggcggTCATCTTGCCGGAGGTCTGGGCCTGCCGCGGCTAGATGGGATAGTGACGCGGGCCGTGCTGGAGGGTGACCCAGCGCAACTGGGTGAACTGATCGATGGCCGTGCGGCTGCCGAAGCTGCCATAGCCGCTGGACTTGACCCCGCCAAACGGCATCTGCGCTTCATCGTGAACGGTCGGGCCGTTGATATGGCAGAT  >  AE015451/3796514‑3796709                                                                                                                                                                                                                                                                                                                                                                                                                   CCGACCGTTCACGATGAAGCGCAGATGCCGTTTGGCGGGGTCAAGTCCAGCGGCTATGGCAGCTTCGGCAGCCGCACGGCCATCGATCAGTTCACCCAGTTGCGCTGGGTCACCCTCCAGCACGGCCCGCGTCACTATCCCATCTAGCCGCGGCAGGCCCAGACCTCCGGCAAGCTGACCGCCGCCCCGTCATATCG                                                                                                                                                                                                              >  2:514254/1‑197                                TTGGCGGGGTCAAGCCCAGCGGCTATGGCAGCTTCGGCAGCCGCACGGCCATCGATCAGTTCACCCAGTTGCGCTGGGTCACCCTCCAGCACGGCCCGCGTCACTATCCCATCTAGCCGCGGCAGGCCCAGACCTCCGGCAAGATGACCGCCGCCCCGTCATATCGGGCGGCGGTCATCTTGCCGGAGGTCTGGGCCTGCCGCGGCT                                                                                                                                                                     <  1:569097/207‑1                                                                                                                                  CGTCACTATCCCATCTAGCCGCGGCAGGCCCCGACCTCCGGCAAGATGACCGCCGCCCCGTCATATCGGGCGGCGGTCATCTTGCCGGAGGTCTG                                                                                                                                                                                   <  1:440058/95‑1                                                                                                                                                   GCCGCGGCAGGCCCAGGCCTGCGGCAAGATGACCGCCGCCCCGTCATATCGGGCGGC                                                                                                                                                                                                        <  2:290641/57‑1                                                                                                                                                          CAGGCCCAGACCTCCGGCAAGATGACCGCCGCCCCGTCATATCGGGCGGC                                                                                                                                                                                                        >  1:514969/1‑50                                                                                                                                                          CAGGCCCAGACCTCCGGCAAGATGACCGCCGCCCCGTCATATCGGGCGGC                                                                                                                                                                                                        <  2:514966/50‑1                                                                                                                                                                            AAGATGACCGCCGCCCCGTCATATCGGGCGGCGGTCATCTTGCCGGAGGTCTGGGCCTGCCGCGGCTAGATGGGATAGTGACGCGGGCCGTGCTGGAGGGTGACCCAGCGCAACTGGGTGAA                                                                                                              >  1:915315/1‑122                                                                                                                                                                                                     GGGCGGCGGTCATCTTGCCGGAGGTCTGGGCCGGCCGCGGCTAGATGGGATAGGGACGCGGGCCGTGCTGGAGGGTGACCCAGCGCAACTGGGTGAACTGATCGATGGCCGTGCGGCTGCCGAAGCTGCCATAGCCGCTGGACTTGACCCCGCCAAACGGCATCTGCGCTTCATCGTGAACGGTCGGGCCGTTGATATGGCAGAT  <  1:246439/205‑1                                                                                                                                                                                                        gGGCGGTCATCTTGCCGGAGGTCTGGGCCTGCCGCGGCTAGATGGGATAGTGATGCGGGCCGTGCTGGAGGGTGACCCAGCGCAACTGGGTGAACTGATCGATGGCCGTGCGGCTGCCGAAGCTGCCATAGCCGCTGGACTTGACCCCGCCAAACGGCATCTGCGCTTCATCGTGAACGGTCGGGCCGTTGATATGGCAGAT  <  1:13907/201‑1                                                                                                                                                                                                                                                                                                                                                                                                                   CCGACCGTTCACGATGAAGCGCAGATGCCGTTTGGCGGGGTCAAGTCCAGCGGCTATGGCAGCTTCGGCAGCCGCACGGCCATCGATCAGTTCACCCAGTTGCGCTGGGTCACCCTCCAGCACGGCCCGCGTCACTATCCCATCTAGCCGCGGCAGGCCCAGACCTCCGGCAAGATGACCGCCGCCCCGTCATATCGGGCGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/3796691‑3796487 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggcggcggTCATCTTGCCGGAGGTCTGGGCCTGCCGCGGCTAGATGGGATAGTGACGCGGGCCGTGCTGGAGGGTGACCCAGCGCAACTGGGTGAACTGATCGATGGCCGTGCGGCTGCCGAAGCTGCCATAGCCGCTGGACTTGACCCCGCCAAACGGCATCTGCGCTTCATCGTGAACGGTCGGGCCGTTGATATGGCAGAT  >  AE015451/3796514‑3796709

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.