| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AE015451 | 3914680 = | 49 (0.850) | 3 (0.050) | 3/324 | NT | 6.3% | coding (107/702 nt) | PP_3454 | putative transcriptional regulatory protein |
| ? | AE015451 | 3914699 = | 43 (0.790) | coding (88/702 nt) | PP_3454 | putative transcriptional regulatory protein | |||||
TTCTATATTCTGCATGGGCCTGTGCTGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGGACCTGCAGCAGCGGGTTTACCCGCGAAGCGCTCGCCACAGGCTTACTTCAACCCAGACGCCCAAGCACCTATGCCGAACATTTTCCTGGTCGAAGACGACAGCGCCCTGTCCGAGCTGATCGCCAGCTACCTGCAACGCAACGACTTCCATGTCCAGGTGATCGCCCGGGGCGATCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AE015451/3914915‑3914680‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggcgatcaCCTGGACATGGAAGTCGTTGCGTTGCAGGTAGCTGGCGATCAGCTCGGACAGGGCGCTGTCGTCTTCGACCAGGAAAATGTTCGGCATAGGTGCTTGGGCGTCTGGGTTGAAGTAAGCCTGTGGCGAGCGCTTCGCGGGTAAACCCGCTGCTGCAGGTCCCCGTAGGAGCGGGTTCACCCGC > AE015451/3914699‑3914880 TTCTATATTCTGCATGGGCCTGTGCTGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGGACCTGCAGCAGCGGGTTTACCCGCGAAGCGCTCGCCACAGGCTTACTTCAACCCAGACGCCCAAGCACCTATGCCGAACATTTTCCTGGTCGAAGACGACAGCGCCCTGTCCGAGCTGATCGCCAGCTACCTGCAACGCAACGACTTCCATGTCCAGGTGATCGCCCGGGGCGATCA > 1:499993/1‑236 TCTGCATGGGCCTGTGCTGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGGACCTGCAGCAGCGGGTTTACCCGCGAAGCGCTCGCCACAGGCTTACTTCAACCCAGACGCCCAAGCACCTATGCCGAACATTTTCCTGGTCGAAGACGACAGCGCCCTGTCCGAGCTGATCGCCAGCTACCTGCAACGCAACGACTTCCATGTCCAGGTGATCGCCCGGGGCG > 2:732436/1‑224 ATGGGCCTGTGCTGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGGACCTGCAGCAGCGGGTTTACCCGCGAAGCGCTCGCCACAGGCTTACTTCAACCCAGACGCCCAAGCACCTATGCCGAACATTTTCCTGGTCGAAGACGACAGCGCCCTGTCCGAGCTGATCGCCAGCTACCTGCAACGCAACGACTTCCATGTCCAGGTGATCGCCCGGGGC > 2:384160/1‑218 GCCTCTTCGCGGGTGAACCCGCTCCTACGGGGACCTGCAGCAGCGGGTTTACCCGCGCAGCGCTCGCCACAGGCTTACTTCAACCCAGACGCCCAAGCACCTATGCCGAACATTTTCCTGGTCGAAGACGACAGCGCCCTGTCCGAGCTGATCGCCAGCTACCTGCAACGCAACGACTTCCATGTCCAGGTGATCGCCCGGGGC < 2:730615/204‑1 TCTTCGCGGGTGAACCCGCTCCTACGGGGACCTGCAGCAGCGGGTTTACCCGCGAAGCGCTCGCCACAGGCTTACTTCAACCCAGACGCCCAAGCACCTATGCCGAACATTTTCCTGGTCGAAGACGACAGCGCCCTGTCCGAGCTGATCGCCAGCTACCTGCAACGCAACGACTTCCATGTCCAGGTGATCGCCCGGGGCGATCctgg > 1:168582/1‑205 TCTTCGCGGGTGAACCCGCTCCTACGGGGACCTGCAGCAGCGGGTTTACCCGCGAAGCGCTCGCCACAGGCTTACTTCAACCCAGACGCCCAAGCACCTATGCCGAACATTTTCCTGGTCGAAGACGACAGCGCCCTGTCCGAGCTGATCGCCAGCTACCTGCAACGCAACGACTTCCATGTCCAGGTGATCGCCCGGGGCGATC > 1:946487/1‑205 CGCGGGTGAACCCGCTCCTACGGGGACCTGCAGCAGCGGGTTTACCCGCGAAGCGCTCGCCACAGGCTTACTTCAACCCAGACGCCCAAGCACCTATGCCGAACATTTTCCTGGTCGAAGACGACAGCGCCCTGTCCGAGCTGATCGCCAGCTACCTGCAACGCAACGACTTCCATGTCCAGGTGATCGCCCGGGGCGATCACCTGGACATGGAAGTCGTTGCGTTGCAGG < 1:530634/231‑1 GCGGGTGAACCCGCTCCTACGGGGACCTGCAGCAGCGGGTTTACCCGCGAAGCGCTCGCCACAGGCTTACTTCAACCCAGACGCCCAAGCACCTATGCCGAACATTTTCCTGGTCGAAGACGACAGCGCCCTGTCCGAGCTGATCGCCAGCTACCTGCAACGCAACGACTTCCATGTCCAGGTGATCGCCCGGGGCGAT > 2:884895/1‑199 AGCGGGTTTACCCGCGAAGCGCTCGCCACAGGCTTACTTCAACCCAGACGCCCAAGCACCTATGCCGAACATTTTCCTGGTCGAAGACGACAGCGCCCTGTCCGAGCTGATCGCCAGCTACCTGCAACGCAACGACTTCCATGTCCAGGTGATCGCCCGGGGCGATCACCTGGACATGGAAGTCGTTGCGTTGCAGGTAGCTGGCGATCAGCTCGGACAGGGCGCTGTCGTCTTC < 1:384163/235‑1 GGTTTACCCGCGAAGCGCTCGCCACAGGCTTACTTCAAACCAGACGCCCAAGCACCTATGCCGAACATTTTCCTGGTCGAAGACGACAGCGCCCTGTCCGAGCTGATCGCCAGCTACCTGCAACGCAACGACTTCAATGTCCAGGTGATCGCCCGGGGC > 1:616779/1‑159 CCAGACGCCCAAGCACCTATGCCGAACATTTTCCTGGTCGAAGACGACAGCGCCCTGTCCGAGCTGATCGCCAGCTACCTGCAACGCAACGACTTCCATGTCCAGGTGATCGCCCGGGGCGATCACCTGGACATGGAAGTCGTTGCGTTGCAGGTAGCTGG < 2:957988/161‑1 CCCAAGCACCTATGCCGAACATTTTCCTGGTCGAAGACGACAGCGCCCTGTCCGAGCTGATCGCCAGCTACCTGCAACGCAACGACTTCCATGTCCAGGTGATCGCCCGGGG < 1:668138/112‑1 CCCAAGCACCTATGCCGAACATTTTCCTGGTCGAAGACGACAGCGCCCTGTCCGAGCTGATCGCCAGCTACCTGCAACGCAACGACTTCCATGTCCAGGTGATCGCCCGGGG > 2:668135/1‑112 cTCACCTGGACATGGAAGTCGTTGCGTTGCAGGTAGCTGGCGATCAGCTCGGACAGGGCGCTGTCGTCTTCGACCAGGAAAATGTTCGGCATAGGTGCTTGGGCGTCTGGGTTGAAGTAAGCCTGTGGCGAGCGCTTCGCGGGTAAACCCGCTGCTGCAGGTCCCCGTAGGAGCGGGTTCACCCGC < 2:1063547/185‑1 ACCTGGACATGGAAGTCGTTGCGTTGCAGGTAGCTGGCGATCAGCTCGGACAGGGCGCGGTCGTCTTCGACCAGGAAAATGTTCGGCATAGGTGCTTGGGCGTCTGGGTTGAAGTAAGCCTGTGGCGAGCGCTTCGCGGGTAAACCCGCTGCTGCAGGTCCCCGTAGGAGCGGGTT < 2:72183/176‑1 TTCTATATTCTGCATGGGCCTGTGCTGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGGACCTGCAGCAGCGGGTTTACCCGCGAAGCGCTCGCCACAGGCTTACTTCAACCCAGACGCCCAAGCACCTATGCCGAACATTTTCCTGGTCGAAGACGACAGCGCCCTGTCCGAGCTGATCGCCAGCTACCTGCAACGCAACGACTTCCATGTCCAGGTGATCGCCCGGGGCGATCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AE015451/3914915‑3914680‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggcgatcaCCTGGACATGGAAGTCGTTGCGTTGCAGGTAGCTGGCGATCAGCTCGGACAGGGCGCTGTCGTCTTCGACCAGGAAAATGTTCGGCATAGGTGCTTGGGCGTCTGGGTTGAAGTAAGCCTGTGGCGAGCGCTTCGCGGGTAAACCCGCTGCTGCAGGTCCCCGTAGGAGCGGGTTCACCCGC > AE015451/3914699‑3914880 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |