New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 3954146	39 (0.680)	3 (0.050)	3/326	NT	7.8%	coding (377/1977 nt)	PP_5606	conserved exported protein of unknown function with YVTN beta‑propeller repeat
	?	AE015451	= 3954204	34 (0.620)					coding (319/1977 nt)	PP_5606	conserved exported protein of unknown function with YVTN beta‑propeller repeat

CTGGCAGCTCGATGCGCGCCATGGTGCTGGTCACGCCCCCCACCGACACCGTCGGGTCGATCACTGTCAGGCTGGCGTCATTGTTCAGCATCAGCAAGAAGTAGCTGTTCAGGTCGAGCAGCGGCCGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/3954018‑3954146 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggccgggGACCGCGAGCAGAGCTGCAAGGCGCGGGTCGCGCTGTTTCTCAAGAGCAGCATCGGGGCCCGGCCGCTGCTCGACCTGAACAGCTACTTCTTGCTGATGCTGAACAATGACGCCAGCCTGACAGTGATCGACCCGACGGTGTCGGTGGGGGGCGTGACCAGCACCATGGCGCGCATCGAGCTGCCAGGGCGGCCCATGGACTGGGCGGCCACCAGC  <  AE015451/3954204‑3953989                                                                                                                                                                                                                                                                                                                                                           CTGGCAGCTCGATGCGCGCCATGGTGCTGGTCACGCCCCCCACCGACACCGTCGGGTCGATCACTGTCAGGCTGGCGTCATTGTTCAGCATCAGCAAGAAGTAGCTGTTCAGGTCGAGCAGCGGCC                                                                                                                                                                                                                             >  2:943237/1‑126                                                                                        GCATCAGCAAGAAGTAGCTGTTCAGGTCGAGCAGCGGCCGGGGACCGCGAGCAGAGCTGCAAGGCGCGGGTCGCGC                                                                                                                                                                                        <  1:27209/76‑1                                                                                        GCATCAGCAAGAAGTAGCTGTTCAGGTCGAGCAGCGGCCGGGGACCGCGAGCAGAGCTGCAAGGCGCGGGTCGCGC                                                                                                                                                                                        >  2:27208/1‑76                                                                                                               AGGTCGAGCAGCGGCCGGGGACCGCGAGCAGAGCTGCAAGGCGCGGGTCGCGCTGTTTCTCAAGAGCAGCATCGGGGCCCGGCCGCTGCTCGACCTGAACAGCTACTTCTTGCTGATGCTGAACAATGACGCCAGCCTGACAGTGATCGACCCGACGGTGTCGGTGGGGGGCGTGACCAGCACCCTGGCGCGCATCGAGCTGCCAGGGCGGCCCATGGACTGGGCGGCCACCAGC  >  1:240489/1‑235                                                                                                                                GGGACCGCGAGCAGAGCTGCAAGGCGCGGGTCGCGCTGTTTCTCAAGAGCAGCATCGGGGCCCGGCCGCTGCTCGACCTGAACAGCTACTTCTTGCTGATGCTGAACAATGA                                                                                                            <  1:698636/112‑1                                                                                                                                GGGACCGCGAGCAGAGCTGCAAGGCGCGGGTCGCGCTGTTTCTCAAGAGCAGCATCGGGGCCCGGCCGCTGCTCGACCTGAACAGCTACTTCTTGCTGATGCTGAACAATGA                                                                                                            >  2:698633/1‑112                                                                                                                                                                                                                                                                                                                                                           CTGGCAGCTCGATGCGCGCCATGGTGCTGGTCACGCCCCCCACCGACACCGTCGGGTCGATCACTGTCAGGCTGGCGTCATTGTTCAGCATCAGCAAGAAGTAGCTGTTCAGGTCGAGCAGCGGCCGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/3954018‑3954146 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggccgggGACCGCGAGCAGAGCTGCAAGGCGCGGGTCGCGCTGTTTCTCAAGAGCAGCATCGGGGCCCGGCCGCTGCTCGACCTGAACAGCTACTTCTTGCTGATGCTGAACAATGACGCCAGCCTGACAGTGATCGACCCGACGGTGTCGGTGGGGGGCGTGACCAGCACCATGGCGCGCATCGAGCTGCCAGGGCGGCCCATGGACTGGGCGGCCACCAGC  <  AE015451/3954204‑3953989

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.