New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 3954146	39 (0.680)	3 (0.050)	3/326	NT	7.8%	coding (377/1977 nt)	PP_5606	conserved exported protein of unknown function with YVTN beta‑propeller repeat
	?	AE015451	= 3954204	34 (0.620)					coding (319/1977 nt)	PP_5606	conserved exported protein of unknown function with YVTN beta‑propeller repeat

TCGCTGGTGGCCGCCCAGTCCATGGGCCGCCCTGGCAGCTCGATGCGCGCCATGGTGCTGGTCACGCCCCCCACCGACACCGTCGGGTCGATCACTGTCAGGCTGGCGTCATTGTTCAGCATCAGCAAGAAGTAGCTGTTCAGGTCGAGCAGCGGCCGGGCCCCGATGCTGCTCTTGAGAAACAGCGCGACCCGCGCCTTGCAGCTCTGCTCGCGGTCCCCGGCCGGTGCCGACTGCGCCGGGTCGATCCACGCCCCCGGGGCCATACCCGACAGCGGTTGGCCACTGGTCTGGTCGCTGAGCTTGAAGCGGATGTTGGCGAAGCCGCCCTCCTTCAGTTCGCCGCCGGCCAATGGCCGGGCCTCGAACTCCACGTTCACGCCGTCCCGGCTGAGCCGGTGCAAGGCCTGCGAGCCACCC  >  AE015451/3953987‑3954406                                                                                                                                                                                                                          |                                                                                                                                                                                                           tcgCTGGTGGCCGCCCAGTCCATGGGCCGCCCTGGCAGCTCGATGCGCGCCATGGTGCTGGTCACGCCCCCCACCGACACCGTCGGGTCGATCACTGTCAGGCTGGCGTCATTGTTCAGCATCAGCAAGAAGTAGCTGTTCAGGTCGAGCAGCGGCCGGGCCCCGATGCTGCTCTTGAGAAACAGCGCGACCCGCGCCTTGCAGCTCTGCTCGCGGTCCCCGGCCGGTGCCGACTg                                                                                                                                                                                          <  1:234982/236‑1 (MQ=255)   gCTGGTGGCCGCCCAGTCCATGGGCCGCCCTGGCAGCTCGATGCGCGCCAGGGTGCTGGTCACGCCCCCCACCGACACCGTCGGGTCGATCACTGTCAGGCTGGCGTCATTGTTCAGCATCAGCAAGAAGTAGCTGTTCAGGTCGAGCAGCGGCCGGGCCCCGATGCTGCTCTTGAGAAACAGCGCGACCCGCGCCTTGCAGCTCTGCTCGCGGTCcccggccgctgctcgacct                                                                                                                                                                                         >  1:240489‑M2/1‑216 (MQ=255)       gtggCCGCCCAGTCCATGGGCCGCCCTGGCAGCTCGATGCGCGCCATGGTGCTGGTCACGCCCCCCACCGACACCGTCGGGTCGATCACTGTCAGGCTGGCGTCATTGTTCAGCATCAGCAAGAAGTAGCTGTTCAGGTCGAGCAGCGGCCGGGCCCCGATGCTGCTCTTGAGAAACAGCGCGACCCGCGCCTTGCAGCTCTGCTCGCGGTCCCCGGCCGGTGCCGACTGCGCCg                                                                                                                                                                                     <  1:365714/235‑1 (MQ=255)                        gggCCGCCCTGGCAGCTCGATGCGCGCCATGGTGCTGGTCACGCCCCCCGCCGACACCGTCGGGTCGATCACTGTCAGGCTGGCGTCATTGTTCAGCATCAGCAAGAAGTAGCTGTTCAGGTCGAGCAGCGGCCGGGCCCCGATGCTGCTCTTGAGAAACAGCGCGACCCGCGCCTTGCAGCTCTGCTCGCGGTCCCCGGCCGGTGc                                                                                                                                                                                                <  1:344473/207‑1 (MQ=255)                         ggCCGCCCTGGCAGCTCGATGCGCGCCATGGTGCTGGTCACGCCCCCCACCGACACCGTCGGGTCGATCACTGTCAGGCTGGCGTCATTGTTCAGCATCAGCAAGAAGTAGCTGTTCAGGTCGAGCAGCGGCCGGGCCCCGATGCTGCTCTTGAGAAACAGCGCGACCCGCGCCTTGCAGCTCTGCTCGCGGTCCCCGGCCGGTGCCGACTGCGCCGGGTCGATCCACGCCCCCg                                                                                                                                                                   <  1:709820/235‑1 (MQ=255)                                cTGGCAGCTGGATGCGCGCCATGGTGCTGGTCACGCCCCCCACCGACACCGTCGGGTCGATCACTGTCAGGCTGGCGTCATTGTTCAGCATCAGCAAGAAGTAGCTGTTCAGGTCGAGCAGCGGCCGGGCCCCGATGCTGCTCTTGAGAAACAGCGCGACCCGCGCCTTGCAGCTCTGCTCGCGGTCCCCGGCCGGTg                                                                                                                                                                                                 >  2:658587/1‑198 (MQ=255)                                cTGGCAGCTCGATGCGCGCCATGGTGCTGGTCACGCCCCCCACCGACACCGTCGGGTCGATCACTGTCAGGCTGGCGTCATTGTTCAGCATCAGCAAGAAGTAGCTGTTCAGGTCGAGCAGCGGCCGGGCCCCGATGCTGCTCTTGAGAAACAGCGCGACCCGCGCCTTGCAGCTCTGCTCGCGGTCCCCGGCCGGTGCCGACTGCGCCGGGTCGATCCACGCCCCCg                                                                                                                                                                   >  1:372600/1‑228 (MQ=255)                                                                  gCCCCCCACCGACACCGTCGGGTCGATCACTGTCAGGCTGGCGTCATTGTTCAGCATCAGCAAGAAGTAGCTGTTCAGGTCGAGCAGCGGCCGGGCCCCGATGCTGCTCTTGAGAAACAGCGCGACCCGCGCCTTGCAGCTCTGCTCGCGGTCCCCGGCCGGTGCCGACTGCGCCGGGTCGATCCACGCCCCCGGGGCCATACCCGACAGCGGTTgg                                                                                                                                            >  2:647311/1‑217 (MQ=255)                                                                   ccccccACCGACACCGTCGGGTCGATCACTGTCAGGCTGGCGTCATTGTTCAGCATCAGCAAGAAGTAGCTGTTCAGGTCGAGCAGCGGCCGGGCCCCGATGCTGCTCTTGAGAAACAGCGCGACCCGCGCCTTGCAGCTCTGCTCGCGGTCCCCGGCCGGTGCCGACTGCGCCGGGTCGATCCACGCCCCCGGGGCCATACCCGACAGCGGTTGGCCACTGGTCTGGTCGCTGa                                                                                                                         <  1:434603/235‑1 (MQ=255)                                                                     ccccACCGACACCGTCGGGTCGATCACTGTCAGGCTGGCGTCATTGTTCAGCATCAGCAAGAAGTAGCTGTTCAGGTCGAGCAGCGGCCGGGCCCCGATGCTGCTCTTGAGAAACAGCGCGACCCGCGCCTTGCAGCTCTGCTCGCGGTCCCCGGCCGGTGCCGACTGCGCCGGGTCgct                                                                                                                                                                              >  2:74536/1‑178 (MQ=255)                                                                         aCCGACACCGTCGGGTCGATCACTGTCAGGCTGGCGTCATTGTTCAGCATCAGCAAGAAGTAGCTGTTCAGGTCGAGCAGCGGCCGGGCCCCGATGCTGCTCTTGAGAAACAGCGCGACCCGCGCCTTGCAGCTCTGCTCGCGGTCCCCGGCCGGTGCCGACTGCGCCGGGTCGATCCACGCCCCCGGGGCCATACCCGACAGCGGTTGGCCACTGGTCTGGTCGCTGAGCTTGaa                                                                                                                  <  1:389865/236‑1 (MQ=255)                                                                               acCGTCGGGTCGATCACTGTCAGGCTGGCGTCATTGTTCAGCATCAGCAAGAAGTAGCTGTTCAGGTCGAGCAGCGGCCGGGCCCCGATGCTGCTCTTGAGAAACAGCGCGACCCGCGCCTTGCAGCTCTGCTCGCGGTCCCCGGCCGGTGCCGACTGCGCCGGGTCGATCCACGCCCCCGGGGCCATACCCGa                                                                                                                                                      >  1:482195/1‑194 (MQ=255)                                                                                      ggTCGATCACTGTCAGGCTGGCGTCATTGTTCAGCATCAGCAAGAAGTAGCTGTTCAGGTCGAGCAGCGGCCGGGCCCCGATGCTGCTCTTGAGAAACAGCGCGACCCGCGCCTTGCCGCTCTGCTCGCGGTCCCCGGCCGGTGCCgc                                                                                                                                                                                             >  2:260564/1‑147 (MQ=255)                                                                                              aCTGTCAGGCTGGCGTCATTGTTCAGCATCAGCAAGAAGTAGCTGTTCAGGTCGAGCAGCGGCCGGGCCCCGATGCTGCTCTTGAGAAACAGCGCGACCCGCGCCTTGCAGCTCTGCTCGCGGTCCCCGGCCGGTGCCGACTGCGCCGGGTCGATCCACGCCCCCGGGGCCATACCCGACAGCGGTTGGCCACTGGTCTGGTCGCTGAGCTTGAAGCGGa                                                                                                             >  2:801580/1‑220 (MQ=255)                                                                                                   cAGGCTGGCGTCATTGTTCAGCATCAGCAAGAAGTCGCTGTTCAGGTCGAGCAGCGGCCGGGCCCCGATGCTGCTCTGGAGAAACAGCGCGACCCGCGCCTTGCAGCTCTGCTCGCGGTCCCCGGCCGGTGCCGACTGCGCCGGGTCGATCCACGCCCCCgggg                                                                                                                                                                <  1:130609/164‑1 (MQ=255)                                                                                                         ggCGTCATTGTTCAGCATCAGCAAGAAGTAGCTGTTCAGGTCGAGCAGCGGCCGGGCCCCGATGCTGCTCTTGAGAAACAGCGCGACCCGCGCCTTGCAGCTCTGCTCGCGGTCCCCGGCCGGTGCCGACTGCGCCGGGTCGATCCACGCCCCCGGGGCCATACCCGACAGCGGTTGGCCACTGGTCTGGTCGCTGAGCTTGAAGCGGATGTTGGCGAAGCCGCCCTCCTTCAGtc                                                                                  >  2:835499/1‑235 (MQ=255)                                                                                                             tCATTGTTCAGCATCAGCAAGAAGTAGCTGTTCAGGTCGAGCAGCGGCCGGGCCCCGATGCTGCTCTTGAGAAACAGCGCGACCCGCGCCTTGCAGCTCTGCTCGCGGTCcc                                                                                                                                                                                                          <  1:698636‑M2/112‑3 (MQ=255)                                                                                                             tCATTGTTCAGCATCAGCAAGAAGTAGCTGTTCAGGTCGAGCAGCGGCCGGGCCCCGATGCTGCTCTTGAGAAACAGCGCGACCCGCGCCTTGCAGCTCTGCTCGCGGTCcc                                                                                                                                                                                                          >  2:698633‑M2/1‑110 (MQ=255)                                                                                                             tCATTGTTCAGCATCAGCAAGAAGTAGCTGTTCAGGTCGAGCAGCGGCCGGGCCCCGATGCTGCTCTTGAGAAACAGCGCGACCCGCGCCTTGCAGCTCTGCTCGCGGTCCCCGGCCGGTGCCGACTGCGCCGGGTCGATCCACGcccccc                                                                                                                                                                   >  2:206861/1‑150 (MQ=255)                                                                                                             tCATTGTTCAGCATCAGCAAGAAGTAGCTGTTCAGGTCGAGCAGCGGCCGGGCCCCGATGCTGCTCTTGAGAAACAGCGCGACCCGCGCCTTGCAGCTCTGCTCGCGGTCCCCGGCCGGTGCCGACTGCGCCGGGTCGATCCACGCCCCCGGGGCCATACCCGACAGCgg                                                                                                                                                >  2:305286/1‑170 (MQ=255)                                                                                                             tCATTGTTCAGCATCAGCAAGAAGTAGCTGTTCAGGTCGAGCAGCGGCCGGGCCCCGATGCTGCTCTTGAGAAACAGCGCGACCCGCGCCTTGCAGCTCTGCTCGCGGTCCCCGGCCGGTGCCGACTGCGCCGGGTCGATCCACGCCCCCGGGGCCATACCCGACAGCGGTTGGCCACTGGTCTGGTCGCTGAGCTTGAAGCGGATGTTGGCGAAGCCGCCCTCCTTCAGTTcgc                                                                               >  1:695669/1‑235 (MQ=255)                                                                                                                   ttCAGCATCAGCAAGAAGTAGCTGTTCAGGTCGAGCAGCGGCCGGGCCCCGATGCTGCTCTTGAGAAACAGCGCGACCCGCGCCTTGCAGCTCTGCTCGCGGTCCCCGGCCGGTGCCGACTGCGCCGGGTCGATCCACGCCCCCGGGGCCATACCCGACAGCGGTTGGCCACTGGTCTGGTCGCTGAGCTTGAAGCGGATGTTGGCGAAGCCGCCCTCCTTCAGTTCGCCGCCGGc                                                                        >  1:1022315/1‑236 (MQ=255)                                                                                                                   ttCAGCATCAGCAAGAAGTAGCTGTTCAGGTCGAGCAGCGGCCGGGCCCCGATGCTGCGCTTGAAAAACAGCGCGACCAGCGCCTTGCAGCTCTGCTCGCGGTCCCCGGCCGGTGCCGACTGCGCCGGGTAGATCCACGCCCCCGGGGCCATACCCGACAGCGGTTGGCCACTGGTCTGGTCGCTGAGCTTGAAGCGGATGTTGGCGAAGCCGCCCTCCTTCAGTTCGccgccg                                                                          >  2:575478/1‑234 (MQ=255)                                                                                                                        catcagcaAGAAGTAGCTGTTCAGGTCGAGCAGCGGCCGGGCCCCGATGCTGCTCTTGAGAAACAGCGCGACCCGCGCCTTGCAGCTCTGCTCGCGGTCCCCGGCCGGTGCCGACTGCGCCGGGTCGATCCACGCCCCCGGGGCCATACCCGACAGCGGTTGGc                                                                                                                                           >  2:785988/1‑164 (MQ=255)                                                                                                                           cagcaAGAAGTAGCTGTTCAGGTCGAGCAGCGGCCGGGCCCCGATGCTGCTCTTGAGAAACAGCGCGACCCGCGCCTTGCAGCTCTGCTCGCGGTCCCCGGCCGGTGCCGACTGCGCCGGGTCGATCCACGCCCCCGGGGCCATACCCGACAGCGGTTGGCCACTGGTCTGGTCGCTGAGCTTGAAGCGGATGTTgg                                                                                                       >  1:105921/1‑197 (MQ=255)                                                                                                                           cagcaAGAAGTAGCTGTTCAGGTCGAGCAGCGGCCGGGCCCCGATGCTGCTCTTGAGAAACAGCGCGACCCGCGCCTTGCAGCTCTGCTCGCGGTCCCCGGCCGGTGCCGACTGCGCCGGGTCGATCCACGCCCCCGGGGCCATACCCGACAGCGGTTGGCCACTGGTCTGGTCGCTGAGCTTGAAGCGGATGTTGGCGAAGCCGCCCTCCTTCAGTTCGCCGCCGGc                                                                        >  2:789699/1‑228 (MQ=255)                                                                                                                                 gcagTAGCTGTTCAGGTCGAGCAGCGGCCGGGCCCCGATGCTGCTCTTGAGAAACAGCGCGACCCGCGCCTTGCAGCTCTGCTCGCGGTCCCCGGCCGGTGCCGACTGCGCCGGGTCGATCCACGCCCCCGGGGCCATACCCGACAGCGGTTGGCCACTGGTCTGGTCGCTGAGCTTGAAGCGGATGTTGGCGAAGCCGCCCTCCTTCAGTTcgcc                                                                              <  1:871953/214‑1 (MQ=255)                                                                                                                                   agTAGCTGTTCAGGTCGAGCAGCGGCCGGGCCCCGATGCTGCTCTTGAGAAACAGCGCGACCCGCGCCTTGCAGCTCTGCTCGCGGTCCCCGGCCGGTGCCGACTGCGCCGGGTCGATCCACGCCCCCGGGGCCATACCCGACAGCGGTTGGCCACTGGTCTGGTCGCTGAGCTTGAAGCGGAt                                                                                                            >  2:13380/1‑184 (MQ=255)                                                                                                                                          gTTCAGGTCGAGCAGCGGCCGGGCCCCGATGCTGCTCTTGAGAAACAGCGCGACCCGCGCCTTGCAGCTCTGCTCGCGGTCCCCGGCCGGTGCCGACTGCGCCGGGTCGATCCACGCCCCCGGGGCCATACCCGACAGCGGTTGGCCACTGGTCTGGTCGCTGAGCTTGAAGCGGATGTTGGCGAAGCCGCCCTCCTTCCGTTCGCCGCCGGCCAATGGCCGGGCCTCGACCTc                                                   >  2:1053313/1‑234 (MQ=255)                                                                                                                                                     gcagcGGCCGGGCCCCGATGCTGCTCTTGAGAAACAGCGCGACCCGCGCCTTGCAGCTCTGCTCGCGGTCCCCGGCCGGTGCCGACTGCGCCGGGTCGATCCACGCCCCCGGGGCCATACCCGACAGCGGTTGGCCACTGGTCTGGTCGCTGAGCTTGAAGCGGATGTTGGCGAAGCCGCCCTCCTTCAGTTCGCCGCCGGCCAATGGCCGGGCCTCGAACTCCACGTTCACGcc                                       >  1:943149/1‑235 (MQ=255)                                                                                                                                                                        gctgctCTTGAGAAACAGCGCGACCCGCGCCTTGCAGCTCTGCTCGCGGTCCCCGGCCGGTGCCGACTGCGCCGGGTCGATCCACGCCCCCGGGGCCCTACCCGACAGCGGTTGGCCACTGGTCTGGTCGCTGAGCCTGAAGCGGATGTTGGCGCAGCCGCCCTCCTTCCGTTCGCCGCCGGCCAATGGCCGGGCCTc                                                         >  2:44380/1‑198 (MQ=255)                                                                                                                                                                        gctgctCTTGAGAAACAGCGCGACCCGCGCCTTGCAGCTCTGCTCGCGGTCCCCGGCCGGTGCCGACTGCGCCGGGTCGATCCACGCCCCCGGGGCCATACCCGACAGCGGTTgg                                                                                                                                            >  1:137983/1‑115 (MQ=255)                                                                                                                                                                             tctTGAGAAACAGCGCGACCCGCGCCTTGCAGCTCTGCTCGCGGTCCCCGGCCGGTGCCGACTGCGCCGGGTCGATCCACGCCCCCGGGGCCATACCCGACAGCGGTTGGCCACTGGTCTGGTCGCTGAGCTTGAAGCGGATGTTGGCGAAGCCGCCCTCCTTCAGTTCGCCGCCGGCCAATGGCCGGGCCTCGAACTCCACGTTCACGCCGTCCCGGCTGAGCCGGTGCAAGGc               >  1:1024254/1‑235 (MQ=255)                                                                                                                                                                                    aaaCAGCGCGACCCGCGCCTTGCAGCTCTGCTCGCGGTCCCCGGCCGGTGCCGACTGCGCCGGGTCGATCCACGCCCCCGGGGCCATACCCGACAGCGGTTGGCCACTGGTCTGGTCGCTGAGCTTGAAGCGGATGTTGGCGAAGCCGCCCTCCTTCa                                                                                     <  2:357809/158‑1 (MQ=255)                                                                                                                                                                                    aaaCAGCGCGACCCGCGCCTTGCAGCTCTGCTCGCGGTCCCCGGCCGGTGCCGACTGCGCCGGGTCGATCCACGCCCCCGGGGCCATACCCGACAGCGGTTGGCCACTGGTCTGGTCGCTGAGCTTGAAGCGGATGTTGGCGAAGCCGCCCTCCTTCa                                                                                     >  1:357812/1‑158 (MQ=255)                                                                                                                                                                                         gcgcGACCCGCGCCTTGCAGCTCTGCTCGCGGTCcccggccgctgctcgacctgaacagctacttcttgctgatgc                                                                                                                                                                  >  2:27208‑M2/1‑34 (MQ=255)                                                                                                                                                                                         gcgcGACCCGCGCCTTGCAGCTCTGCTCGCGGTCcccggccgctgctcgacctgaacagctacttcttgctgatgc                                                                                                                                                                  <  1:27209‑M2/76‑43 (MQ=255)                                                                                                                                                                                          cgcgACCCGCGCCTTGCAGCTCTGCTCGCGGTCCCCGGCCGGTGCCGACTGCGCCGGGTCGATCCACGCCCCCGGGGCCATACCCGACAGCGGTTGGCCACTGGTCTGGTCGCTGAGCTTGAAGCGGATGTTGGCGAAGCCGCCCTCCTTCAGTTCGCCGCCGGCCAATGGCCGGGCCTCGAACTCCACGTTCACGCCGTCCCGGCTGAGCCGGTGCAAGGCCTGCGAGCCAccc  <  1:835502/235‑1 (MQ=255)                                                                                                                                                                                            cgACCCGCGCCTTGCAGCTCTGCTCGCGGTCCCCGGCCGGTGCCGACTGCGCCGGGTCGATCCACGCCCCCGGGGCCATACCCGACAGCGGTTGGCCACTGGTCTGGTCGCTGAGCTTGAAGCGGATGTTGGCGAAGCCGCCCTCCTTCAGTTCGCCGCCGGCCAATgg                                                                  >  2:487009/1‑169 (MQ=255)                                                                                                                                                                                            cgACCCGCGCCTTGCAGCTCTGCTCGCGGTCCCCGGCCGGTGCCGACCGCGCCCGGCCGATCCACGCCCCCGGGGCCATACCCGa                                                                                                                                                      >  2:166934/1‑85 (MQ=255)                                                                                                                                                                                              aCCCGCGCCTTGCAGCTCTGCTCGCGGTCCCCGGCCGGTGCCGACTGCGCCGGGCCGATCCACGCCCCCGGGGCCATACCCGACCGCGGTTGGCCACTGGTCTGGTCGCTGAGCTTGAAGCGGCTGTTGGCGAAGCCGCCCTCCtt                                                                                       >  2:291634/1‑146 (MQ=255)                                                                                                                                                                                                                          |                                                                                                                                                                                                           TCGCTGGTGGCCGCCCAGTCCATGGGCCGCCCTGGCAGCTCGATGCGCGCCATGGTGCTGGTCACGCCCCCCACCGACACCGTCGGGTCGATCACTGTCAGGCTGGCGTCATTGTTCAGCATCAGCAAGAAGTAGCTGTTCAGGTCGAGCAGCGGCCGGGCCCCGATGCTGCTCTTGAGAAACAGCGCGACCCGCGCCTTGCAGCTCTGCTCGCGGTCCCCGGCCGGTGCCGACTGCGCCGGGTCGATCCACGCCCCCGGGGCCATACCCGACAGCGGTTGGCCACTGGTCTGGTCGCTGAGCTTGAAGCGGATGTTGGCGAAGCCGCCCTCCTTCAGTTCGCCGCCGGCCAATGGCCGGGCCTCGAACTCCACGTTCACGCCGTCCCGGCTGAGCCGGTGCAAGGCCTGCGAGCCACCC  >  AE015451/3953987‑3954406

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.