New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	4123926 =	44 (0.760)	4 (0.070)	4/320	NT	8.8%	coding (401/1746 nt)	PP_3628	Choline/carnitine/betaine transporter family protein
	?	AE015451	4123974 =	42 (0.780)					coding (449/1746 nt)	PP_3628	Choline/carnitine/betaine transporter family protein

GCCGAGAGGGCCGTTTGCGTGCTTGCCGATCAGCGGCCGGAAGGCGGCGGAAATCAGCTGCGAGCGGCCACGGCGGAAGGTGCCGTAGGCGATTACCAGGCCGACGATGGCGTACATGGCCCAAGGGTGCAGGGTCCAATGGAACAAGGTAGTGGCCATTGCCACCTGCATCGCTTCGCTGGTCTGCCCGCTGGCCGAGCCGGGCGGCGGCGATATGTAGTGCGACAGCGGCTCGGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/4124164‑4123926 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggctcggccaGCGGGCAGACCAGCGAAGCGATGCAGGTGGCAATGGCCACTACCTTGTTCCATTGGACCCTGCACCCTTGGGCC  >  AE015451/4123974‑4124047                                                                                                                                                                                                                                                                                                                           GCCGAGAGGGCCGTTTGCGTGCTTGCCGATCAGCGGCCGGAAGGCGGCGGAAATCAGCTGCGAGCGGCCACGGCGGAAGGTGCCGTAGGCGATTACCAGGCCGACGATGGCGTACATGGCCCAAGGGTGCAGGGTCCAATGGAACAAGGTAGTGGCCATTGCCACCTGCATCGCTTCGCTGGTCTGCCCGCTGGCCGAGCCGGGCGGCGGCGATATGTAGTGCGACAGCGGCTCGG                                                                               <  1:844288/236‑1    GAGAGGGCCGTTTGCGTGCTTGCCGATCAGCGGCCGGAAGGCGGCGGAAATCAGCTGCGAGCGGCCACGGCGGAAGGTGCCGTAGGCGATTACCAGGCCGACGATGGCGTACATGGCCCAAGGGTGCAGGGTCCAATGGAACAAGGTAGTGGCCATTGCCACCTGCATCGCTTCGCTGGTCTGCCCGCTGGCCGAGCCGGGCGGCGGCGATATGTAGTGCGACAGCGGCTCGG                                                                               <  2:951399/233‑1                                                                                                                                                              ATTGCCAACGGGATCGCTTCGCTGGCCTGCCCGCTGGCCGAGCCGGGCGGCGGCGATATGTAGTGCGACAGCGGCTCGGCCAGCGGGCAGACCAGCGAAGCGATGCAGGTGGCAATGGCCACTACCTTGTTCCATTGGACCCTGCACCCTT       <  1:248299/151‑1                                                                                                                                                                 GCCACCTGCATCGCTTCGCTCGTCTGCCCGCTGGCCGAGCCGGGCGGCGGCGATGTGTAGTGCGACAGCGGCCCGGCCA                                                                            >  2:791819/1‑79                                                                                                                                                                   CACCTGCATCGCTTCGCTGGTCTGCCCGCTGGCCGAGCCGGGCGGCGGCGATATGTAGTGCGACAGCGGCTCGGCCA                                                                            >  2:844379/1‑77                                                                                                                                                                                                      AGCCGGGCGGCGGCGATATGTAGTGCGACAGCGGCTCGGCCAGCGGGCAGACCAGCGAAGCGATGCAGGTGGCAATGGCCACTACCTTGTTCCATTGGACCCTGCACCCTTGGGCC  <  1:237702/116‑1                                                                                                                                                                                                                CGGCGATATGTAGTGCGACAGCGGCTCGGCCAGCGGGCAGACCAGCGAAGCGATGCAGGTGGCAATGGCCACT                                   <  1:877948/73‑1                                                                                                                                                                                                                CGGCGATATGTAGTGCGACAGCGGCTCGGCCAGCGGGCAGACCAGCGAAGCGATGCAGGTGGCAATGGCCACT                                   >  2:877945/1‑73                                                                                                                                                                                                                                                                                                                           GCCGAGAGGGCCGTTTGCGTGCTTGCCGATCAGCGGCCGGAAGGCGGCGGAAATCAGCTGCGAGCGGCCACGGCGGAAGGTGCCGTAGGCGATTACCAGGCCGACGATGGCGTACATGGCCCAAGGGTGCAGGGTCCAATGGAACAAGGTAGTGGCCATTGCCACCTGCATCGCTTCGCTGGTCTGCCCGCTGGCCGAGCCGGGCGGCGGCGATATGTAGTGCGACAGCGGCTCGGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/4124164‑4123926 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggctcggccaGCGGGCAGACCAGCGAAGCGATGCAGGTGGCAATGGCCACTACCTTGTTCCATTGGACCCTGCACCCTTGGGCC  >  AE015451/4123974‑4124047

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.