New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 4160438	41 (0.710)	3 (0.050)	3/326	NT	6.7%	coding (1178/1374 nt)	PP_3662	conserved protein of unknown function
	?	AE015451	= 4160588	44 (0.800)					coding (1328/1374 nt)	PP_3662	conserved protein of unknown function

GAAGTCGCCCGGCACATGGTCGAAGGCCTCAAAGCGGTCAAGCAGTTCCGCCGCGAGCGCAACGATGCCTTCCACTTCAACTGGCTGCTGAAGATCGAGGAGAGCTTCCAGCGACCGTTCGACCCGACCCACCAGGCCATGGCCGACCTGGACTTGCGCCGCGAGCTGCCGCCCCATGAACTGGCGGCCAACCTGCGCCGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/4160236‑4160438 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccgggcAGCTTCATCCGGTGCTGGTCGACGAATGCCTGCAGCAGCCGGCCCAGCGGGTCCAGTACGGCGCTGTCACCGTGGATCTGATACGGCCCGTGTTCCTCGATCAGGCGGATGCCTTTGTCCTTGACGTTGCCTGCGACAATCCCGGAAAACGCCCGGCGCAGGTTGGCCGCCAGTTCATGGGGCGGCAGCTCGCGGCGCAAGTCCAGGTCGGCCATGGCCTGGTGGGTCGGGTC  <  AE015451/4160588‑4160356                                                                                                                                                                                                                                                                                                                                                                                                                                                      GAAGTCGCCCGGCACATGGTCGAAGGCCTCAAAGCGGTAAAGCAGTTCCGCCGCGAGCGCAACGATGCCTTCCACTTCAACTGGCTGCTGAAGATCGAGGAGAGCTTCCAGCGACTGTTCGACCCGACCCACCAGGCCATGGCCGACCTGGACTTGCGCCGCGAGCTGCCGCCCCATGAACTGGCGGCCAACCTGCGCCGGG                                                                                                                                                                                                                                            >  2:564480/1‑202                                              TTCCGCCGCGAGCGCAACGATGCCTTCCACTTCAACTGGCTGCTGAAGATCGAGGAGAGCTGCCAGCGACCGTTCGACCCGACCCACCAGGCCATGGCCGACCTGGACTTGCGCCGCGAGCTGCCGCCCCATGAACTGGCGGCCAACCTGCGCCGGGCAGCTTCATCCGGTGCTGGTCGACGAATGCCTGCAGCAGCCGGCCCAGCGGGTCCAGTACGGCGCTGTC                                                                                                                                                                       <  1:122620/226‑1                                                                                                                                                                CGCGAGCTGCCGCCCCATGAACTGGCGGCCAACCTGCGCCGGGCAGCTTCATCCGGTGCTGGTCGACGAATGCCTGCAGCAGCCGGCCCAGCGGGTCCAGTCCGGCGCTGTCACCGTGGATCTGATACGGCCCGTGTTCCTCGATCAGGCGGATGCCTT                                                                                                                        >  1:905794/1‑159                                                                                                                                                                                           GCCAACCTGCGCCAGGCAGCTTCATCCGGTGCTGGTCGACGAATGCCTGCAGCAGCCGGCCCAGCGGGTCCAGTACGGCGCTGTCACCGTGGATCTGATACGGCCCGTGTTCCTCGATCAGGCGGATGCCTTTGTCCTTGACGTTGCCTGCGACAATCCCGGCAAACGCCCGGCGCAGGTTGGCCGCCAGTTCATGGGGCGGCAGCTCGCGGCGCAAGTCCAGGTCGGCCATGGC                 >  1:564483/1‑235                                                                                                                                                                                                         GGCAGCTTCATCCGGTGCTGGTCGACGAATGCCTGCAGCAGCCGGCCCAGCGGGTCCAGTACGGCGCTGTCACCGTGGATCTGATACGGCCCGTGTTCCTCGATCAGGCGGATGCCTTTGTCCTTGACGTTGCCTGCGACAATCCCGGAAAACGCCCGGCGCAGGTTGGCCGCCAGTTCATGGGGCGGCAGCTCGCGGCGCAAGTCCAGGTCGGCCATGGCCTGGTGGGTCGGGTC  <  1:528794/236‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                      GAAGTCGCCCGGCACATGGTCGAAGGCCTCAAAGCGGTCAAGCAGTTCCGCCGCGAGCGCAACGATGCCTTCCACTTCAACTGGCTGCTGAAGATCGAGGAGAGCTTCCAGCGACCGTTCGACCCGACCCACCAGGCCATGGCCGACCTGGACTTGCGCCGCGAGCTGCCGCCCCATGAACTGGCGGCCAACCTGCGCCGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/4160236‑4160438 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccgggcAGCTTCATCCGGTGCTGGTCGACGAATGCCTGCAGCAGCCGGCCCAGCGGGTCCAGTACGGCGCTGTCACCGTGGATCTGATACGGCCCGTGTTCCTCGATCAGGCGGATGCCTTTGTCCTTGACGTTGCCTGCGACAATCCCGGAAAACGCCCGGCGCAGGTTGGCCGCCAGTTCATGGGGCGGCAGCTCGCGGCGCAAGTCCAGGTCGGCCATGGCCTGGTGGGTCGGGTC  <  AE015451/4160588‑4160356

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.