New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	4261045 =	57 (0.990)	4 (0.070)	4/324	NT	6.7%	coding (1717/2460 nt)	PP_3734	putative ABC transporter, permease protein
	?	AE015451	4261097 =	58 (1.060)					coding (1665/2460 nt)	PP_3734	putative ABC transporter, permease protein

TTGACCTGCGCCTCTCCGCCGACCTGTATGTCACCCCGCGGGACACGGCCCAAGGCTTGCAGATAGTCGAGTGGCTCAAGCAGCAGCCCGGGGCCAGCGTGGTCATGCCCGGCTGGCGCGCAGACATGCAGCTGCAAGGTTGGCCGGTGCAAGTGCAGGGCATTGTCGATCACCCTGCCTATCGTACGCGCTGGCCATTGCTGGAACAGCATTCGCGCGCCTGGCAGCAACTGGCCAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/4261284‑4261045 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggccagcgCGTACGATAGGCAGGGTGATCGACAATGCCCTGCACTTGCACCGGCCAACCTTGCAGCTGCATGTCTGCGCGCCAGCCGGGCATGACCACGCTGGCCCCGGGCTGCTGCTTGAGCCACTCGACTATCTGCAAGCCTTGGGCCGTGTCCCGCGGGGTGACATACAGGTCGGCGGAGAGGCGCAGGTCAAGCCAACCGACAAACGTCTTGCGAAAACCCTCGGTCATGCT  >  AE015451/4261097‑4261324                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      TTGACCTGCGCCTCTCCGCCGACCTGTATGTCACCCCGCGGGACACGGCCCAAGGCTTGCAGATAGTCGAGTGGCTCAAGCAGCAGCCCGGGGCCAGCGTGGTCATGCCCGGCTGGCGCGCAGACATGCAGCTGCAAGGTTGGCCGGTGCAAGTGCAGGGCATTGTCGATCACCCTGCCTATCGTACGCGCTGGCCATTGCTGGAACAGCATTCGCGCGCCTGGCAGCAACTG                                                                                                                                                                                                                                             <  2:451574/233‑1            CTCTCCGCCGACCTGTATGTCACCCCGCGGGACACGGCCCAAGGCTTGCAGATAGTCGAGTGGCTCAAGCAGCAGCCCGGGGCCAGCGTGGTCATGCCCGGCTGGCGCGCAGACATGCAGCTGCAAGGTTGGCCGGTGCAAGTGCAGGGCATTGTCGATCACCCTGCCTATCGTACGCGCTGGCCATTGCTGGAACAGCATTCGCGCGCCTGGCAGCAACTGGCCCGCG                                                                                                                                                                                                                                      >  1:722811/1‑229                 CGCCGACCTGTATGTCACCCCGCGGGACACGGCCCAAGGCTTGCAGGTAGTCGAGTGGCTCAAGCAGCAGCCCGGGGCCAGCGTGGTCATGCCCGGCTGGCGCGCAGACATGCAGCTGCAAGGTTGGCCGGTGCAAGTGCAGGGCATTGTCGATCACCCTGCCTATCGTACGCGCTGGCCATTGCTGGAACAGCATTCGCGCGCCTGGCAGCAACTGGCCAG                                                                                                                                                                                                                                        <  1:147385/222‑1                                                             AGATAGTCGAGTGGCTCAAGCAGCAGCCCGGGGCCAGCGTGGTCATGCCCGGCTGGCGCGCAGACATGCAGCTGCAAGGTTGGCCGGTGCAAGTGCAGGGCATTGTCGATCACCCTGCCTATCGTACGCGCTGGCCATTGCTGGAACAGCATTCGCGCGCCTGGCAGCAACTGGCCAGCGCGTACGATAGGCAGGGTGATCG                                                                                                                                                                                                                >  1:688268/1‑202                                                             AGATAGTCGAGTGGCTCAAGCAGCAGCCCGGGGCCAGCGTGGTCATGCCCGGCTGGCGCGCAGACATGCAGCTGCAAGGTTGGCCGGTGCAAGTGCAGGGCATTGTCGATCACCCTGCCTATCGTACGCGCTGGCCATTGCTGGAACAGCATTCGCGCGCCTGGCAGCAACTGGCCAGCGCGTACGATAGGCAGGGTGATCG                                                                                                                                                                                                                <  2:688265/202‑1                                                                     GAGTGGCTCAAGCAGCAGCCCGGGGCCAGCGTGGTCATGCCCGGCTGGCGCGCAGACATGCAGCTGCAAGGTTGGCCGGTGCAAGTGCAGGGCATTGTCGATCACCCTGCCTATCGTACGCGCTGGCCATTGCTGGAACAGCATTCGCGCGCCTGGCAGCAACTGGCCAGC                                                                                                                                                                                                                                       <  2:69183/171‑1                                                                                       ccgGGGGCCAGCGTGGTCATGCCCGGCTGGCGCGCAGACATGCGGCTGCAAGGTTGGCCGGTGCAAGTGCAGGGCATTGTCGATCACCCTGCCTATCGTACGCGCTGGCCATTGCTGGAACAGCATTCGCGCGCCTGGCAGCAACTGGCCAGCG                                                                                                                                                                                                                                      <  2:966073/151‑1                                                                                                        CATGCCCGGCTGGCGCGCAGACATGCAGCTGCAAGGTTGGCCGGTGCAAGTGCAGGGCATTGTCGATCACCCTGCCTATCGTACGCGCTGGCCATTGCTGGAACAGCATTCGCGCGCCTGGCAGCAACTGGC                                                                                                                                                                                                                                           <  2:308110/132‑1                                                                                                                   GGCGCGCAGACATGCAGCTGCAAGGTTGGCCGGTGCAAGTGCAGGGCATTGTCGATCACCCTGCCTATCGTACGCGCTGGCCATTGCTGGAACAGCATTCGCGCGCCTGGCAGCAACTGGCCAGCGCGTACGATAGGCAGGGTGATCGACAATGCCCTGCACT                                                                                                                                                                                                 <  1:293219/163‑1                                                                                                                   GGCGCGCAGACATGCAGCTGCAAGGTTGGCCGGTGCAAGTGCAGGGCATTGTCGATCACCCTGCCTATCGTACGCGCTGGCCATTGCTGGAACAGCATTCGCGCGCCTGGCAGCAACTGGCCAGCGCGTACGATAGGCAGGGTGATCGACAATGCCCTGCACT                                                                                                                                                                                                 >  2:293216/1‑163                                                                                                                        GCAGACATGCAGCTGCAAGGTTGGCCGGTGCAAGTGCAGGGCATTGTCGATCACCCTGCCTATCGTACGCGCTGGCCATTGCTGGAACAGCATTCGCGCGCCTGGCAGCAACTGG                                                                                                                                                                                                                                            <  2:1048354/115‑1                                                                                                                        GCAGACATGCAGCTGCAAGGTTGGCCGGTGCAAGTGCAGGGCATTGTCGATCACCCTGCCTATCGTACGCGCTGGCCATTGCTGGAACAGCATTCGCGCGCCTGGCAGCAACTGG                                                                                                                                                                                                                                            >  1:1048357/1‑115                                                                                                                                                                                                                                   gcgACTGGCCCGCGCGGACGATAGGCAGGGTGATCGACAATGCCCTGCACTTGCACCGGCCAACCT                                                                                                                                                                                  <  1:783779/63‑1                                                                                                                                                                                                                                          GCCAGCGCGTACGATAGGCAGGGTGATCGACAATGCCCTGCACTTGCACCGGCCAACCTTGCAGCTGCATGTCTGCGCGCCAGCCGGGCATGACCACGCTGGCCCCGGGCTGCTGCTTGAGCCACTCGACTATCTGCAAGCCTTGGGCCGTGTCCCGCGGGGTGACATACAGGTCGGCGGAGAGGCGCAGGTCAAGCCAACCGACAAACGTCTTGCGAAAACCCTCGGTCATGCT  <  1:868661/235‑1                                                                                                                                                                                                                                            CAGCGCGTACGATAGGCAGGGTGATCGCCAATGCCCTGCACTTGCACCGGCCAACCTTGCAGCTGCATGTCTGCGCGCCAGCCGGGCATGACCACGCTGGCCCCGGGCTGCTGCTTGAGCCACTCGACTATCTGCAAGCCTTGGGCCGTGTC                                                                                   <  2:797479/152‑1                                                                                                                                                                                                                                            CAGCGCGTACGATAGGCAGGGTGATCGACAATGCCCTGCACTTGCACCGGCCAACCTTGCAGCTGCATGTCTGCGCGCCAGCCGGGCATGACCACGCTGGCCCCGGGCTGCTGCTTGAGCCACTCGACTATCTGCAAGCCct                                                                                             >  2:277783/1‑140                                                                                                                                                                                                                                            CAGCGCGTACGATAGGCAGGGTGATCGACAATGCCCTGCACTTGCACCGGCCAACCTTGCAGCTGCATGTCTGCGCGCCAGCCGGGCATGACCACGCTGGCCCCGGGCTGCTGCTTGAGCCACTCGACTATCTGCAAGCCTTGGGCCGTGTCCC                                                                                 >  1:101131/1‑154                                                                                                                                                                                                                                            CAGCGCGTACGATAGGCAGGGTGATCGACAATGCCCTGCACTTGCACCGGCCAACCTTGCAGCTGCATGTCTGCGCGCCAGCCGGGCATGACCACGCTGGCCCCGGGCTGCTGCTTGAGCCACTCGACTATCTGCAAGCCTTGGGCCGTGTCCC                                                                                 <  2:101129/154‑1                                                                                                                                                                                                                                             AGCGCGTACGATAGGCAGGGTGATCGACAATGCCCTGCACTTGCACCGGCCAACCTTGCAGCTGCATGTCTGCGCGCCAGCCGGGCATGACCACGCTGGCCCCGGGCTGCTGCTTGAGCCACTCGACTATCTGCAAGCCTTGGGCCGTGTCCCGCGGGGTGACATACTGGTCGGCGGAGAGGCGCAGGTCAAGCCAACCGACAAACGTCTTGCGA                   >  2:655677/1‑215                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      TTGACCTGCGCCTCTCCGCCGACCTGTATGTCACCCCGCGGGACACGGCCCAAGGCTTGCAGATAGTCGAGTGGCTCAAGCAGCAGCCCGGGGCCAGCGTGGTCATGCCCGGCTGGCGCGCAGACATGCAGCTGCAAGGTTGGCCGGTGCAAGTGCAGGGCATTGTCGATCACCCTGCCTATCGTACGCGCTGGCCATTGCTGGAACAGCATTCGCGCGCCTGGCAGCAACTGGCCAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/4261284‑4261045 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggccagcgCGTACGATAGGCAGGGTGATCGACAATGCCCTGCACTTGCACCGGCCAACCTTGCAGCTGCATGTCTGCGCGCCAGCCGGGCATGACCACGCTGGCCCCGGGCTGCTGCTTGAGCCACTCGACTATCTGCAAGCCTTGGGCCGTGTCCCGCGGGGTGACATACAGGTCGGCGGAGAGGCGCAGGTCAAGCCAACCGACAAACGTCTTGCGAAAACCCTCGGTCATGCT  >  AE015451/4261097‑4261324

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.