New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	4417589 =	65 (1.130)	5 (0.090)	5/314	NT	7.7%	coding (482/552 nt)	PP_3905	Transcriptional regulator, LuxR family
	?	AE015451	4417603 =	61 (1.150)					coding (496/552 nt)	PP_3905	Transcriptional regulator, LuxR family

CCCTTGCCAGATGCTTGGTAGCGCGGGGCTCCCTGTGCGATTCTGGCGAAGGCTTCGTTGCGCGCTTCCTGGCTGCGTTCAAGCAACGCTGCGAGCACCATTCGCTTGTCCTCGAAAGCTTTATGCACGGCTGTCTGCATGTGGTGATCCTCGGGTGGGTCAGGCGTGGTATTCGAAGGCCTCGGCCTTGCGAACGATTCGAACTTGGGCGGTGCGGCGCTCCGGAGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/4417818‑4417589 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgctccggagcgcCGCACCGCCCAAGTTCGAATCGTTCGCAAGGCCGAGGCCTTCGAATACCACGCCTGACCCACCCGAGGATCACCACATGCAGACAGCCGTGCATAAAGCTTTCGAGGACAAGCGAATGGTGCTCGCAGCGTTGCTTGAACGCAGCCAGGAAGCGCGCAACGAAGCCTTCGCCAGAAT  >  AE015451/4417603‑4417779                                                                                                                                                                                                                                                                                                                                                                                                                         CCCTTGCCAGATGCTTGGTAGCGCGGGGCTCCCTGTGCGATTCTGGCGAAGGCTTCGTTGCGCGCTTCCTGGCTGCGTTCAAGCAACGCTGCGAGCACCATTCGCTTGTCCTCGAAAGCTTTATGCACGGCTGTCTGCATGTGGTGATCCTCGGGCGGGTCAGGCGTGGTATTCGAAGGCCTCGGCCTTGCGAACGATTCGAACTTGGGCGGTGCGGC                                                                                                                                                                                               >  1:303646/1‑218                                          TCTGGCGAAGGCTTCGTTGCGCGCTTCCTGGCTGCGTTCAAGCAACGCTGCGAGCACCATTCGCTTGTCCTCGAAAGCTTTATGCACGGCTGTCTGCATGTGGTGATCCTCGGGTGGGTCAGGCGTGGTATTCGAAGGCCTCGGCCTTGCGAACGATTCGAACTTGGGCGGTGCGGCGCTCCGGAGCGCC                                                                                                                                                                                  <  2:873284/190‑1                                                                                                                TCGAAAGCTTTATGCACGGCTGTCTGCATGTGGTGATCCTCGGGTGGGTCAGGCGTGGTATTCGTAGGCCTCGGCCTTGCGAACGATTCGAACTTGGGCGGTGCGGCG                                                                                                                                                                                              >  2:339587/1‑108                                                                                                                                                   ATCCTCGGGTGGGTCAGGCGTGGTATTCGAAGGCCTCGGCCTTGCGAACGATTCGAACTTGGGCGGGGCGGCGCTCCGGAGCGCCGCACCGCCCAAGGTCGAATCGTTCGCAAGGCCGGGGCCTTCGAATACCACGCCTGAC                                                                                                                         >  2:401949/1‑142                                                                                                                                                       TCGGGTGGGTCAGGCGTGGTATTCGAAGGCCTCGGCCTTGCGAACGATTCGGAATTGTGCGTTGCGGCGCTCCGGAGCGCCGCACCGCCCc                                                                                                                                                                        >  1:583825/1‑90                                                                                                                                                                               GAAGGCCTCGGCCTTGCGAACGATTCGAACTTGGGCGGTGCGGCGCTCCGGAGCGCCGCACCGCGCAAGTTCGAATCGTTCGCAAGGCCGAGGCCTTCGAATACCACGCCTGACCCACCCGAGGATCACCACATGCAGACAGCCG                                                                                          >  2:446104/1‑145                                                                                                                                                                                       CGGCCTTGCGAACGATTCGAACTTGGGCGGTGCGGCGCTCCGGAGCGCCGCACCGCCCAAGTTCGAATCGTTCGCAAGGCCGAGGCCTTCGAATACCACGCCTGACCCACCCGAGGATCACCACATGCAGACAGCCGTGCA                                                                                      >  2:857044/1‑141                                                                                                                                                                                                                   GGTTCGGCGCTCCGGAGCGCCGCACCGCCCAAGTTCGAATCGTTCGCAAGGCCGAGGCCTTCGAATACCACGCCTGACCCACCCGAGGATCACCACATGCAGCCAGCCGTGCATAAAGCTTTCGAGGACAAGCGAATGGTGCTCGCAGCATTGCTTGAACGCAGCCAGCAAGCGCGCAAC                   >  1:147669/1‑180                                                                                                                                                                                                                                  AGCGCCGCACCGCCCAAGTTCGAATCGTTCGCAAGGCCGAGGCCTTCGAATACCACGCCTGACCCACCCGAGGATCACCACACGCAGACAGCCGTGCATAAAGCTTTCGAGGACAAGCGAATGGTGCTCGCAGCGTTGCTTGAACGCAGCCAGGAAGCGCGCAACGAAGCCTTCGCCAGAAT  >  1:935341/1‑182                                                                                                                                                                                                                                  AGCGCCGCACCGCCCAAGTTCGAATCGTTCGCAAGGCCGAGGCCTTCGAATACCACGCCTGACCCACCCGAGGATCACCACACGCAGACAGCCGTGCATAAAGCTTTCGAGGACAAGCGAATGGTGCTCGCAGCGTTGCTTGAACGCAGCCAGGAAGCGCGCAACGAAGCCTTCGCCAGAAT  <  2:935338/182‑1                                                                                                                                                                                                                                                                                                                                                                                                                         CCCTTGCCAGATGCTTGGTAGCGCGGGGCTCCCTGTGCGATTCTGGCGAAGGCTTCGTTGCGCGCTTCCTGGCTGCGTTCAAGCAACGCTGCGAGCACCATTCGCTTGTCCTCGAAAGCTTTATGCACGGCTGTCTGCATGTGGTGATCCTCGGGTGGGTCAGGCGTGGTATTCGAAGGCCTCGGCCTTGCGAACGATTCGAACTTGGGCGGTGCGGCGCTCCGGAGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/4417818‑4417589 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgctccggagcgcCGCACCGCCCAAGTTCGAATCGTTCGCAAGGCCGAGGCCTTCGAATACCACGCCTGACCCACCCGAGGATCACCACATGCAGACAGCCGTGCATAAAGCTTTCGAGGACAAGCGAATGGTGCTCGCAGCGTTGCTTGAACGCAGCCAGGAAGCGCGCAACGAAGCCTTCGCCAGAAT  >  AE015451/4417603‑4417779

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.