New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 4444045	54 (0.940)	4 (0.070)	4/336	NT	7.5%	intergenic (‑64/+145)	nicT/nicF	Putative metabolite transport protein NicT/maleamate amidohydrolase
	?	AE015451	= 4444068	46 (0.810)					intergenic (‑87/+122)	nicT/nicF	Putative metabolite transport protein NicT/maleamate amidohydrolase

CAAGAAGGGGATGAGCCTCCAGGTGATCTTGCTGTACAGCGCTTTCGTGCCATGGTCGATGTCACTGTGGACCGTGGTTGCATTCGCAATTGGCATTTCCTGTCTCCTGGCGGGCGACTTTGTGGTTGTTTTAAGGCCAGCAGTTTTCGACGCGCCGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/4443886‑4444045 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcCCGCCGCGTAGAATGCGCGGCGTGCCCGGCGCGTCGAAAACTGCTGGCCTTAAAACAACCACAAAGTCGCCCGCCAGGAGACAGGAAATGCCAATTGCGAATGCAACCACGGTCCACAGTGACATCGACCATGGCACGAAAGCGCTGTACAGCAAGATCACCTGGAGGCTCATCCCCTTCTTGTGTTTCTGCTACCTCGCAGCTTATCTGGACCGCATCAATGTCGGCTTCGCC  <  AE015451/4444068‑4443835                                                                                                                                                                                                                                                                                                                                                                                                            CAAGAAGGGGATGAGCCTCCAGGTGATCTTGCTGTACAGCGCTTTCGTGCCATGGTCGATGTCACTGTGGACCGTGGTTGCATTCGCAATTGGCATTTCCTGTCTCCTGGCGGGCGACTTTGTGGTTGTTTTAAGGCCAGCAGTTTTCGACGCGCCGGG                                                                                                                                                                                                                                             >  1:563960/1‑159                   CCAGGTGATCTTGCTGTACAGCGCTTTCGTGCCATGGTCGATGTCACTGTGGACCGTGGTTGCATTCGCAATTGGCATTTCCTGTCTCCTGGCGGGCGACTTTGTGGTTGTTTTAAGGCCAGCAGTTTTCGACGCGCCGGGCCCGCCGCGTAGAATGCG                                                                                                                                                                                                                           >  1:925235/1‑159                   CCAGGTGATCTTGCTGTACAGCGCTTTCGTGCCATGGTCGATGTCACTGTGGACCGTGGTTGCATTCGCAATTGGCATTTCCTGTCTCCTGGCGGGCGACTTTGTGGTTGTTTTAAGGCCAGCAGTTTTCGACGCGCCGGGCCCGCCGCGTAGAATGCG                                                                                                                                                                                                                           <  2:925232/159‑1                                     CAGCGCTTTCGTGCCATGGTCGATGTCACTGTGGACCGTGGTTGCATTCGCAATTGGCATTTCCTGTCTCCTGGCGGGCGACTTTGTGGTTGTTTTAAGGCCAGCAGTTTTCGACGCGCCGGGC                                                                                                                                                                                                                                            <  1:568422/124‑1                                                                                                                                   TTAAGGCCAGCAGTTTTCGACGCGCCGGGCCCGCCGCGTAGAATGCGCGGCGT                                                                                                                                                                                                                     >  1:1069578/1‑53                                                                                                                                   TTAAGGCCAGCAGTTTTCGACGCGCCGGGCCCGCCGCGTAGAATGCGCGGCGT                                                                                                                                                                                                                     <  2:1069575/53‑1                                                                                                                                                               GCCCGCCGCGTAGAATGCGCGGCGTGCCCGGCGCGTCGAAAACTGCTGGCCTTAAAACAACCACAAAGTCGCCCGCCAGGAGACAGGAAATGCCAATTGCGAATGCAACCACGGTCCACAGTGACATCGACCATGGCACGAAAGCGCTGTACAGCAAGATCACCTGGAGGCTCATCCCCTTCTTGTGTTTCTGCTACCTCGCAGCTTATCTGGACCGCATCAATGTCGGCTTCGCC  <  1:465054/236‑1                                                                                                                                                               GCCCGCCGCGTAGAATGCGCGGCGTGCCCGGCGCGTCGAAAACTGCTGGCCTTAAAACAACCACAAAGTCGCCCGCCAGGAGACAGGAAATGCCAATTGCGAATGCAACCACGGTCCACAGTGACATCGACCATGGCACGAAA                                                                                               <  1:503096/143‑1                                                                                                                                                                                                                                                                                                                                                                                                            CAAGAAGGGGATGAGCCTCCAGGTGATCTTGCTGTACAGCGCTTTCGTGCCATGGTCGATGTCACTGTGGACCGTGGTTGCATTCGCAATTGGCATTTCCTGTCTCCTGGCGGGCGACTTTGTGGTTGTTTTAAGGCCAGCAGTTTTCGACGCGCCGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/4443886‑4444045 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcCCGCCGCGTAGAATGCGCGGCGTGCCCGGCGCGTCGAAAACTGCTGGCCTTAAAACAACCACAAAGTCGCCCGCCAGGAGACAGGAAATGCCAATTGCGAATGCAACCACGGTCCACAGTGACATCGACCATGGCACGAAAGCGCTGTACAGCAAGATCACCTGGAGGCTCATCCCCTTCTTGTGTTTCTGCTACCTCGCAGCTTATCTGGACCGCATCAATGTCGGCTTCGCC  <  AE015451/4444068‑4443835

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.