New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 4593859	29 (0.500)	3 (0.060)	3/294	NT	9.5%	intergenic (+165/+134)	mccA/PP_4068	methylcrotonyl‑CoA carboxylase biotin‑containing subunit alpha/Transcriptional regulator, Cro/CI family
	?	AE015451	= 4593904	32 (0.650)					intergenic (+210/+89)	mccA/PP_4068	methylcrotonyl‑CoA carboxylase biotin‑containing subunit alpha/Transcriptional regulator, Cro/CI family

TGCCGGCACGGTGAAGGCGCTGTTTTGCCTGGAGGGGGATATGGTCAGCGAAGGGACTGTGCTGGTCGAACTGGTGGAATAACGGTGCCGGAGGGCCGCTTTGCGGCCCTAACGCAACACAAGGCCGCCCCTGCAACAGCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCTACCCGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/4593613‑4593859 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgcgggtaaacccgctcctacaCGCGGCCTGCGCCTAATCACCAACATGTGTCCACCCCCGATCGGATGTAGGAGCGGGTTTACCCGCGAATACGGTAGCGGCGGCAACGGTGAGCGACGGGTAGAGATTGGCCAGCAGGCCCGGCCCTTTCGCGGGTAAACCCGCTCCTACGGGCTGTTGCAGGGGCGGCCTTGTGTTGCGTTAGGGCCGCAAAGCGGCC  <  AE015451/4593904‑4593706                                                                                                                                                                                                                                                                                                                                                                                                                                                                TGCCGGCACGGTGAAGGCGCTGTTTTGCCTGGAGGGGGATATGGTCAGCGAAGGGACTGTGCTGGTCGAACTGGTGGAATAACGGTGCCGGAGGGCCGCTTTGCGGCCCTAACGCAACACAAGGCCGCCCCTGCAACAGCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCTACCCGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAAC                                                                                                                                                                                                                    <  1:653622/236‑1   CCGGCACGGTGAAGGCGCTGTTTTGCCTGGAGGGGGATATGGTCAGCGAAGGGACTGTGCTGGTCGAACTGGTGGAATAACGGTGCCGGAGGGCCGCTTTGCGGCCCTAACGCAACACAAGGCCGCCCCTGCAACAGCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCTACCCGTCGCTCACCGTTGCCGCCGCTACCGTAT                                                                                                                                                                                                                                <  2:973555/222‑1               AGGCGCTGTTTTGCCTGGAGGGGGATATGGTCAGCGAAGGGACTGTGCTGGTCGAACTGGTGGAATAACGGTGCCGGAGGGCCGCTTTGCGGCCCTAACGCAACACAAGGCCGCCCCTGCAACAGCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCTACCCGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCtgtctcttata                                                                                                                                                                                                       >  1:183667/1‑224                                    GGGATATGGTCAGCGAAGGGACTGTGCTGGTCGAACTGGTGGAATAACGGTGCCGGAGGGCCGCTTTGCGGCCCTAACGCAACACAAGGCCGCCCCTGCAACAGCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCTACCCGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCG                                                                                                                                                                                                                           >  1:937481/1‑194                                         ATGGTCAGCGAAGGGACTGTGCTGGTCGAACTGGTGGAATAACGGTGCCGGAGGGCCGCTTTGCGGCCCTAACGCAACACAAGGCCGCCCCTGCAACAGCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCTACCCGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAAC                                                                                                                                                                                                                    <  1:382694/196‑1                                         ATGGTCAGCGAAGGGACTGTGCTGGTCGAACTGGTGGAATAACGGTGCCGGAGGGCCGCTTTGCGGCCCTAACGCAACACAAGGCCGCCCCTGCAACAGCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCTACCCGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAAC                                                                                                                                                                                                                    >  2:382691/1‑196                                                                         GGTGGAATAACGGTGCCGGAGGGCCGCTTTGCGGCCCTAACGCAACACAAGGCCGCCCCTGCAACAGCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCTACCCGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAAC                                                                                                                                                                                                                    >  2:627411/1‑164                                                                                        CCGGAGGGCCGCTTGGCGGCCCTAACGCAACACAAGGCCGCCCCTGCAACAGCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCTACCCGTCGCTCACCGTTGCCGCCGCTACCGTAT                                                                                                                                                                                                                                <  2:104975/137‑1                                                                                                   CTTTGCGGCCCTAACGCAACACAAGGCCGCCCCTGCAACAGCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCTACCCGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGGc                                                                                                                                                                                                                        >  1:243419/1‑133                                                                                                     TTGCGGCCCTAACGCAACACAAGGCCGCCCCTGCAACAGCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCTACCCGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACg                                                                                                                                                                                                         <  2:769802/147‑2                                                                                                           CCCTAACGCAACACAAGGCCGCCCCCGCGACAGCCCGTAGGGGGGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCATTCTCTACCCGTCGCTAACCGTTGCCGCCGCTACCGTATTCGgg                                                                                                                                                                                                                           <  2:814379/123‑3                                                                                                                                   CTGCAACAGCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCTACCCGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGGCAAACCCGCTCCTACACc                                                                                                                                                                                                       >  2:233905/1‑118                                                                                                                                          AGCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCTACCCGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCG                                                                                                                                                                                                                 <  2:35771/102‑1                                                                                                                                              CGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCTACCCGTCGCTCACCGTTGCCGCCGCTACCGTATTCGC                                                                                                                                                                                                                            >  2:320142/1‑87                                                                                                                                                                                                   CGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACGCGGCCTGCGCCTAATCACCAACATGTGTCCACCCCCGATCGGATGTAGGAGCGGGTTTACCCGCGAATA                                                                                                                                  >  1:370723/1‑124                                                                                                                                                                                                         TCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACGCGGCCTGCGCCTAATCACCAACATGTGTCCACCCCCGATCGGATGTAGGAGCGG                                                                                                                                                 >  1:814047/1‑103                                                                                                                                                                                                         TCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACGCGGCCTGCGCCTAATCACCAACATGTGTCCACCCCCGATCGGATGTAGGAGCGG                                                                                                                                                 <  2:814044/103‑1                                                                                                                                                                                                         TCACCGTTGCCCCCGCTACCGTATTCGC                                                                                                                                                                                                                            >  2:604911/1‑28                                                                                                                                                                                                                                    CGGGTAAACCCGCTCCTACACGCGGCCTGCGCCTAATCACCAACATGTGTCCACCCCCGATCGGATGTAGGAGCGGGTTTACCCGCGAATACGGTAGCGGCGGCAACGGTGAGCGACGGGTAGAGATTGGC                                                                                          <  2:1013723/131‑1                                                                                                                                                                                                                                       GTAAACCCGCTCCTACACGCGGCCTGCGCCTAATCACCAACATGTGTCCACCCCCGATCGGATGTAGGAGCGGGTTTACCCGCGAATACGGTAGCGGCGGCAACGGTGAGCGACGGGTAGAGATTGGCCAGCAGGCCCG                                                                               <  2:645115/139‑1                                                                                                                                                                                                                                            CCCGCTCCTACACGCGGCCTGCGCCTAATCACCAACATGTGTCCACCCCCGATCGGATGTAGGAGCGGGTTTACCCGCGAATACGGTAGCGGCGGCAACGGTGAGCGACGGGTAGAGATTGGCCAGCAGGCCCGGCCCTTTCGC                                                                     <  1:809825/144‑1                                                                                                                                                                                                                                                     gCACGCGGCCTGCGCCTAATCACCAACATGTGTCCACCCCCGATCGGATGTAGGGGCGGGTTTACCCGCGAATACGGTAGCGGCGGCAACGGTGAGCGACGGGTAGAGATTGGCCAGCAGGCCCGGCCCTTTCGCGGGTAA                                                               <  2:760436/140‑1                                                                                                                                                                                                                                                     ACACGCGGCCTGCGCCTAATCACCAACATGTGTCCACCCCCGATCGGATGTAGGAGCGGGTTTACCCGCGAATACGGTAGCGGCGGCAACGGTGAGCGACGGGTAGAGATTGGCCAGCAGGCCCGGCCCTTTCGCGGGTAAACCCGCTCCTACGGGCTGTTGCAGGGGCGGCCTTGTGTTGCGTTAGGGCCGCAAAGCGGCC  <  1:135957/202‑1                                                                                                                                                                                                                                                      CACGCGGCCTGCGCCTAATCACCAACATGTGTCCACCCCCGATCGGATGTAGGAGCGGGTTTCCCCGCGAATACGGTAGCGGCGGCAACGGTGAGCGACG                                                                                                       <  2:142669/100‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                TGCCGGCACGGTGAAGGCGCTGTTTTGCCTGGAGGGGGATATGGTCAGCGAAGGGACTGTGCTGGTCGAACTGGTGGAATAACGGTGCCGGAGGGCCGCTTTGCGGCCCTAACGCAACACAAGGCCGCCCCTGCAACAGCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCTACCCGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/4593613‑4593859 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgcgggtaaacccgctcctacaCGCGGCCTGCGCCTAATCACCAACATGTGTCCACCCCCGATCGGATGTAGGAGCGGGTTTACCCGCGAATACGGTAGCGGCGGCAACGGTGAGCGACGGGTAGAGATTGGCCAGCAGGCCCGGCCCTTTCGCGGGTAAACCCGCTCCTACGGGCTGTTGCAGGGGCGGCCTTGTGTTGCGTTAGGGCCGCAAAGCGGCC  <  AE015451/4593904‑4593706

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.