New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 4593859	29 (0.500)	3 (0.060)	3/294	NT	9.5%	intergenic (+165/+134)	mccA/PP_4068	methylcrotonyl‑CoA carboxylase biotin‑containing subunit alpha/Transcriptional regulator, Cro/CI family
	?	AE015451	= 4593904	32 (0.650)					intergenic (+210/+89)	mccA/PP_4068	methylcrotonyl‑CoA carboxylase biotin‑containing subunit alpha/Transcriptional regulator, Cro/CI family

GCGCTGTTTTGCCTGGAGGGGGATATGGTCAGCGAAGGGACTGTGCTGGTCGAACTGGTGGAATAACGGTGCCGGAGGGCCGCTTTGCGGCCCTAACGCAACACAAGGCCGCCCCTGCAACAGCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCTACCCGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACATCCGATCGGGGGTGGACACATGTTGGTGATTAGGCGCAGGCCGCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAACTTCCACCCGCCGTTCACCGTTGCCGCCACTACTCAAACCCTTTCAAAAAGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCGCACAACAGCGCCGGGTAGTTACTGTTCAATGCCTTCAGATAACG  >  AE015451/4593629‑4594091                                                                                                                                                                                                                                       |                                                                                                                                                                                                                                         gcgcTGTTTTGCCTGGAGGGGGATATGGTCAGCGAAGGGACTGTGCTGGTCGAACTGGTGGAATAACGGTGCCGGAGGGCCGCTTTGCGGCCCTAACGCAACACAAGGCCGCCCCTGCAACAGCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCTACCCGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACATcc                                                                                                                                                                                                                                       <  2:1070380/234‑1 (MQ=255)               ggAGGGGGATATGGTCAGCGAAGGGACTGTGCTGGTCGAACTGGTGGAATAACGGTGCCGGAGGGCCGCTTTGCGGCCCTAACGCAACACAAGGCCGCCCCTGCAACAGCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCTACCCGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACATCCGATc                                                                                                                                                                                                                                   >  1:436404/1‑224 (MQ=255)               ggAGGGGGATATGGTCAGCGAAGGGACTGTGCTGGTCGAACTGGTGGAAGACCGGTGCCGGAGGGCCGCTTTGCGGCCCTAACGCAACACAAGGCCGCCCCTGCAACAGCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCTACCCGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACATCCGATCGGGGGTGGac                                                                                                                                                                                                                         <  1:520006/234‑1 (MQ=255)                                           gtgCTGGTCGAACTGGTGGAATAACGGTGCCGGAGGGCCGCTTTGCGGCCCTAACGCAACACAAGGCCGCCCCTGCAACAGCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCTACCCGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACATcc                                                                                                                                                                                                                                       <  2:820121/192‑1 (MQ=255)                                               gggTCGAACTGGTGGAATAACGGTGCCGGAGGGCCGCTTTGCGGCCCTAACGCAACACAAGGCCGCCCCTGCAACAGCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCTACCCGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACATCCGATCGGGGGTGGACACATGTTGGTGATTAGgcgc                                                                                                                                                                                                     <  2:648719/221‑1 (MQ=255)                                                    gAACTGGTGGAATAACGGTGCCGGAGGGCCGCTTTGCGGCCCTAACGCAACACAAGGCCGCCCCTGCAACAGCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCTACCCGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACATCCGATCgcg                                                                                                                                                                                                                                >  2:951480/1‑188 (MQ=255)                                                                       gCCGGAGGGCCGCTTTGCGGCCCTAACGCAACACAAGGCCGCCCCTGCAACAGCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCTACCCGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACATCCGATCGGGGGCGGaca                                                                                                                                                                                                                        >  1:951704/1‑179 (MQ=255)                                                                              ggCCGCTTTGCGGCCCTAACGCAACACAAGGCCGCCCCTGCAACAGCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCTACCCGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACATCCGATCGGGGGTGGACACATGTTGGTGATTAGGCGCAGGCCGCGtgt                                                                                                                                                                                          <  1:135957‑M2/202‑4 (MQ=255)                                                                                   cTTTGCGGCCCTAACGCAACACAAGGCCGCCCCTGCAACAGCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCTACCCGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACATCCGATCGGGGGTGGACACATGTTGGTGATTAGGCGCa                                                                                                                                                                                                    >  1:619058/1‑187 (MQ=255)                                                                                                   cAACACAAGGCCGCCCCTGCAACAGCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCTACCCGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACATCCGATCGGGGGTGGACACATGTTGGTGATTAGGCGCAGGCCGCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAACTTCCACccgcc                                                                                                                                    <  1:942906/235‑1 (MQ=255)                                                                                                     acacAAGGCCGCCCCTGCAACAGCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCTACCCGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACATcc                                                                                                                                                                                                                                       <  2:868501/134‑1 (MQ=255)                                                                                                              cgccCCTGCAACAGCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCTACCCGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACATCCGATCgg                                                                                                                                                                                                                                 >  2:404719/1‑131 (MQ=255)                                                                                                              cgccCCTGCAACAGCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCTACCCGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACATCCGATCGGGGGTg                                                                                                                                                                                                                            <  2:298139/136‑1 (MQ=255)                                                                                                                   cTGCAACAGCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCTACCCGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGGCAAACCCGCTCCTACAcc                                                                                                                                                                                                                                        >  2:233905‑M1/1‑117 (MQ=255)                                                                                                                              cGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCTACCCGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACATCCGATCGGGGGTGGACACATGTTGGTGATTAGGCGCAGGCCGCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCctgct                                                                                                                                                      >  2:564836/1‑190 (MQ=255)                                                                                                                                tAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCTACCCGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACATCCGATCGGGGGTGGACACATGTTGGTGATTAGGCGCAGGCCGCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTgg                                                                                                                                                    >  2:609062/1‑190 (MQ=255)                                                                                                                                 aGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCTACCCGTCGCTCACCGTTGCCGCCGCTACCGTCTTCGCGGGTAAACCCGCTCCTACATCCGATCGGGGGTGGa                                                                                                                                                                                                                          >  2:792979/1‑119 (MQ=255)                                                                                                                                    aGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAAGCTCTACCCGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACATCCGATCGGGGGTGGACACATGTTGGTGATTAGGCGCAg                                                                                                                                                                                                   <  1:193843/139‑1 (MQ=255)                                                                                                                                         gTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCTACCCGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACCTCCGATCGGGGGTGGACACATGTTGGTGATTAGGCGCAGGCCGCGTGTAGGAGCGGGTTTACCCGCGAAAGggccggcc                                                                                                                                                           >  2:936895/1‑174 (MQ=255)                                                                                                                                         gTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCTACCCGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACATCCGATCGGGGGTGGACACATGTTGGTGAt                                                                                                                                                                                                            >  2:176670/1‑125 (MQ=255)                                                                                                                                         gTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCTACCCGTCGCTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACATCCGATCGGGGGTGGCAACATGTTGGTGGTTAGgc                                                                                                                                                                                                       >  2:121078/1‑130 (MQ=255)                                                                                                                                           ttACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCTACCCGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCCCCTACATCCGATCGGGGGTGGACACATGTTGGTGATTAGGCGCAGGCCGCGtgc                                                                                                                                                                                          <  2:760436‑M2/141‑4 (MQ=255)                                                                                                                                                 gcgAAAGGGCCGGGCCTGCTGGCCAATCTCTACCCGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACATCCGATCGGGGGTGGACACATGTTGGTGATTAGGCGCAGGCCGCGtgtaggagcggg                                                                                                                                                                                 <  1:809825‑M2/144‑13 (MQ=255)                                                                                                                                                      aGGGCCGGGCCTGCTGGCCAATCTCTACCCGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACATCCGATCGGGGGTGGACACATGTTGGTGATTAGGCGCAGGCCGCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAACtgc                                                                                                                                            >  2:612272/1‑174 (MQ=255)                                                                                                                                                           cgggccTGCTGGCCAATCTCTACCCGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACATCCGATCGGGGGTGGACACATGTTGGTGATTAGGCGCAGGCCGCGtgtaggagcgggtttac                                                                                                                                                                            <  2:645115‑M2/139‑18 (MQ=255)                                                                                                                                                                ctgctgGCCAATCTCTACCCGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACATCCGATCGGGGGTGGACACATGTTGGTGATTAGGCGCAGGCCGCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAACTTACACacgc                                                                                                                                     >  1:565770/1‑173 (MQ=255)                                                                                                                                                                      gCCAATCTCTACCCGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACATCCGATCGGGGGTGGACACATGTTGGTGATTAGGCGCAGGCCGCGtgtaggagcgggtttacccg                                                                                                                                                                         <  2:1013723‑M2/131‑21 (MQ=255)                                                                                                                                                                              ctACCCGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGTTAAACCCGCTCCTACATCCGATCGGGGGTGGACACATGTTGGTGATTAGGCGCAGGCagcga                                                                                                                                                                                            >  2:130509/1‑103 (MQ=255)                                                                                                                                                                                aCCCGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACATCCGATCGGGGGTGGACACATGTTGGTGATTAGGCGCAGGCCGCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAACTTCCACCCGCCGTTCACCGTTGCCGCCACTACTCAAACCCTTTCAAAAAGCCCCATGCACCCGCACGa                                                                           >  1:402027/1‑215 (MQ=255)                                                                                                                                                                                   cGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAcgcggcctgcgcctaatcaccaacatgtgtccacccccgatcggatgtaggagcgggtttacccgcgaata                                                                                                                                                                   >  1:370723‑M1/1‑53 (MQ=255)                                                                                                                                                                                   cGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACATCCGATCGGGGGTGGACACATGTTGGTGATTAGGCGCAGGCCGCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAACTTCCACCCGCCGTTCACCGTTGCCGCCACTACTCAAACCCTTTCAAAAAGCCCCATGCACCCGCACGACCACCCCAAGaaa                                                              >  2:693094/1‑225 (MQ=255)                                                                                                                                                                                   cGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGGGAAACCCGCTCCTACATCCGATCGGGGGTGGACACATGTTGGTGATTAGGCGCAGGCCGCGtg                                                                                                                                                                                           <  2:142669‑M2/100‑3 (MQ=255)                                                                                                                                                                                     tCGCTGACCGTTGCCGCCGCTACAGTATTCGCGGGTAAACCCGCTCCTACATCCGATCGGGGGTGGACACATGTTGGTGATTAGGCGCAGGCCGCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGccc                                                                                                                                                          <  2:518888/131‑1 (MQ=255)                                                                                                                                                                                         tCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAcgcggcctgcgcctaatcaccaacatgtgtccacccccgatcggatgtaggagcgg                                                                                                                                                                                  >  1:814047‑M1/1‑47 (MQ=255)                                                                                                                                                                                         tCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAcgcggcctgcgcctaatcaccaacatgtgtccacccccgatcggatgtaggagcgg                                                                                                                                                                                  <  2:814044‑M1/103‑57 (MQ=255)                                                                                                                                                                                          cACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACATCCGATCGGGGGTGGACACATGTTGGTGATTAGGCGCAGGCCGCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAACTTCCACCCGCCGTTCACCGTTGCCGCCac                                                                                                                  >  1:1088183/1‑166 (MQ=255)                                                                                                                                                                                                     ccgcTACCGTATTCGCGGGTAAACCCGCTCCTACATCCGATCGGGGGTGGACACATGTTGGTGATTAGGCGCAGGCCGCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAACTTCCACCCGCCGTTCACCGTTGCCGCCACTACTCAAACCCTTTCAAAAAGCCCCATGCACCCGCACGACCACCCCAAGaaa                                                              >  1:794244/1‑207 (MQ=255)                                                                                                                                                                                                              tATTCGCGGGTAAACCCGCTCCTACATCCGATCGGGGGTGGACACATGTTGGTGATTAGGCGCAGGCCGCGtgtaggagcgggtttacccgcgaatacggtagcggcggcaacggtgagcgacg                                                                                                                                        >  1:370723‑M2/1‑71 (MQ=255)                                                                                                                                                                                                                   gcgGGTAAACCCGCTGCTACAGCCGATCGGGGGTGGACACATGTTGGTGATTAGGCGCAGGCCGCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAACTTCCACCCGCCGTTCACCGTTGCCGCCACTACTCAAACCCTTTCAAAAAGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGc                                                         <  2:920275/198‑1 (MQ=255)                                                                                                                                                                                                                   gcgGGTAAACCCGCTCCTACATCCGATCGGGGGTGGACACATGTTGGTGATTAGGCGCAGGCCGCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAACTTCCACCCGCCGTTCACCGTTGCCGCCACTACTCAAACCCTTTCAAAAAGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCGCACAACAGCGCCTGGTAGTTACTGtt                    <  1:564839/235‑1 (MQ=255)                                                                                                                                                                                                                   gcgGGTAAACCCGCTCCTACATCCGATCGGGGGTGGACACATGTTGGTGATTAGGCGCAGGCCGCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAACTTCCACCCGCCGTTCACCGTTGCCGCCACTACTCAAACCCTTTCAAAAAGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCGCACAACAGCGCCGGGTAGTTACTGtt                    <  1:609065/235‑1 (MQ=255)                                                                                                                                                                                                                    cgGGTAAACCCGCTCCTACAcgcggcctgcgcctaatcaccaacatgtgtccacccccgatcggatgtaggagcgggtttacccgcgaatacggtagcggcggcaacggtgagcgacgggtagagattggc                                                                                                                           <  2:1013723‑M1/131‑112 (MQ=255)                                                                                                                                                                                                                       gTAAACCCGCTCCTACAcgcggcctgcgcctaatcaccaacatgtgtccacccccgatcggatgtaggagcgggtttacccgcgaatacggtagcggcggcaacggtgagcgacgggtagagattggccagcaggcccg                                                                                                                <  2:645115‑M1/139‑123 (MQ=255)                                                                                                                                                                                                                            cccGCTCCTACAcgcggcctgcgcctaatcaccaacatgtgtccacccccgatcggatgtaggagcgggtttacccgcgaatacggtagcggcggcaacggtgagcgacgggtagagattggccagcaggcccggccctttcgc                                                                                                      <  1:809825‑M1/144‑133 (MQ=255)                                                                                                                                                                                                                             ccGCTCCTACATCCGATCGGGGGTGGACACATGTTGGTGATTAGGCGCAGGCCGCGtgtaggagcgggtttacccgcgaatacggtagcggcggcaacggtga                                                                                                                                              >  1:814047‑M2/1‑56 (MQ=255)                                                                                                                                                                                                                             ccGCTCCTACATCCGATCGGGGGTGGACACATGTTGGTGATTAGGCGCAGGCCGCGtgtaggagcgggtttacccgcgaatacggtagcggcggcaacggtga                                                                                                                                              <  2:814044‑M2/103‑48 (MQ=255)                                                                                                                                                                                                                             ccGCTCCTACATCCGATCGGGGGTGGACACATGTTGGTGATTAGGCGCAGGCCGCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAACTTCCACCCGCCGTTCACCGTTGCCGCCACTACTCAAACCCTTTCAAAAAGCCCCATGCACCCGCAc                                                                             <  2:489129/168‑1 (MQ=255)                                                                                                                                                                                                                                  ccTACATCCGATCGGGGGTGGACACATGTTGGTGATTAGGCGCAGGCCGCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAACTTCCACCCGCCGTTCACCGTTGCCGCCACTACTCAAACCCTTTCAAAAAGCCCCATGccc                                                                                   >  1:162010/1‑155 (MQ=255)                                                                                                                                                                                                                                    tACATCCGATCGGGGGTGGACACATGTTGGTGATTAGGCGCAGGCCGCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAACTTCCACCCGCCGTTCACCGTTGCCGCCACTACTCAAACCCTTTCAAAAAGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCGCACAACAGCGCCg                                 >  1:1073216/1‑205 (MQ=255)                                                                                                                                                                                                                                    tACATCCGATCGGGGGTGGACACATGTTGGTGATTAGGCGCAGGCCGCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAACTTCCACCCGCCGTTCACCGTTGCCGCCACTACTCAAACCCTTTCAAAAAGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCGCACAACAGCGCCGGGTAGTTACTGTTCACTGCCTTCAGATAACg  >  1:226592/1‑236 (MQ=255)                                                                                                                                                                                                                                     gcacgcggcctgcgcctaatcaccaacatgtgtccacccccgatcggatgtaggggcgggtttacccgcgaatacggtagcggcggcaacggtgagcgacgggtagagattggccagcaggcccggccctttcgcgggtaa                                                                                                <  2:760436‑M1/140‑139 (MQ=255)                                                                                                                                                                                                                                     acacgcggcctgcgcctaatcaccaacatgtgtccacccccgatcggatgtaggagcgggtttacccgcgaatacggtagcggcggcaacggtgagcgacgggtagagattggccagcaggcccggccctttcgcgggtaaacccgctcctacgggctgttgcaggggcggccttgtgttgcgttagggccgcaaagcggcc                                   <  1:135957‑M1/202‑200 (MQ=255)                                                                                                                                                                                                                                      cacgcggcctgcgcctaatcaccaacatgtgtccacccccgatcggatgtaggagcgggtttccccgcgaatacggtagcggcggcaacggtgagcgacg                                                                                                                                        <  2:142669‑M1/100‑99 (MQ=255)                                                                                                                                                                                                                                      cATCCGATCGGGGGTGGACACATGTTGGTGATTAGGCGCAGGCCGCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAACTTCCACCCGCCGTTCACCGTTGCCGCCACTACTCAAACCCTTTCAAAAAGCCCCATGCACCCGCACGACCACCCCAAGAAATTc                                                           <  2:990773/177‑1 (MQ=255)                                                                                                                                                                                                                                      cATCCGATCGGGGGTGGACACATGTTGGTGATTAGGCGCAGGCCGCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAACTTCCACCCGCCGTTCACCGTTGCCGCCACTACTCAAACCCTTTCAAAAAGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGc                                                         <  1:959549/179‑1 (MQ=255)                                                                                                                                                                                                                                       |                                                                                                                                                                                                                                         GCGCTGTTTTGCCTGGAGGGGGATATGGTCAGCGAAGGGACTGTGCTGGTCGAACTGGTGGAATAACGGTGCCGGAGGGCCGCTTTGCGGCCCTAACGCAACACAAGGCCGCCCCTGCAACAGCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCTACCCGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACATCCGATCGGGGGTGGACACATGTTGGTGATTAGGCGCAGGCCGCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAACTTCCACCCGCCGTTCACCGTTGCCGCCACTACTCAAACCCTTTCAAAAAGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCGCACAACAGCGCCGGGTAGTTACTGTTCAATGCCTTCAGATAACG  >  AE015451/4593629‑4594091

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.