New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 4667670	41 (0.710)	6 (0.110)	6/328	NT	13.1%	coding (1436/1854 nt)	nuoL	NADH:ubiquinone oxidoreductase, membrane subunit L
	?	AE015451	= 4667687	40 (0.720)					coding (1453/1854 nt)	nuoL	NADH:ubiquinone oxidoreductase, membrane subunit L

CTCCAAGGACGAGATCCTCTGGGAAGCCTTCGCCAGCGGCAACACCGGCCTGCTGTATGCCGGCCTGGTAGGCGCGTTCATGACCTCGCTGTACACCTTCCGCCTGATCTTCATCGCCTTCCACGGCGAAGCCAAGACCGAAGCCCACGCTGGCCACGGCATCAGCCACTGGCTGCCGCTGGGCGTGCTGATCGTGCTGTCGACTTTCGTCGGCGCCTGGATCACCCCGCCGCTGGCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/4667431‑4667670 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggccggCGCTTTCCGGCAGCACACCGGCCAGCGGCGGGGTGATCCAGGCGCCGACGAAAGTCGACAGCACGATCAGCACGCCCAGCGGCAGCCAGTGGCTGATGCCGTGGCCAGCGTGGGCTTCGGTCTTGGCTTCGCCGTGGAAGGCGATGAAGATCAGGCGGAAGGTGTACAGCGAGGTCATGAACGCGCC  <  AE015451/4667687‑4667501                                                                                                                                                                                                                                                                                                                                                                                                                                             CTCCAAGGACGAGATCCTCTGGGAAGCCTTCGCCAGCGGCAACACCGGCCTGCTGTATGCCGGCCTGGTAGGCGCGTTCATGACCTCGCTGTACACCTTCCGCCTGATCTTCATCGCCTTCCACGGCGAAGCCAAGACCGAAGCCCACGCTGGCCACGGCATCAGCCACTGGCTGCCGCTGGGCGTGCTGATCGTGCTGTCGACTTTCGTCGGCGCCTGGATCACCCCGCCGCT                                                                                                                                                                                                   >  2:741197/1‑234                                                                                                               TCATCGCCTTCCACGGCGAAGCCAAGACCGAAGCCCACGCTGGCCACGGCATCAGCCACTGGCTGCCGCTGGGCGTGCTGATCGTGCTGTCGACTTTCGTCGGCGCCTGGATCACCCCGCCGCTGGCCG                                                                                                                                                                                              <  2:1002778/129‑1                                                                                                                                                                                                    GCTGTCGACTTTCGTCGGCGCCTGGATCACCCCGCCGCTGGCCGGCGCTTTCCGGCAGCACACCGGCCAGCGGCGGGGTGATCCAGGCGCCGGCGAAAGGCGACCGCA                                                                                                                              >  2:645534/1‑108                                                                                                                                                                                                            CTTTCGTCGGCGCCTGGATCACCCCGCCGCTGGCCGGCGCTTTCCGGCAGCACACCGGCCAGCGGCGGGGTGATCCAGGCGC                                                                                                                                                >  1:887779/1‑82                                                                                                                                                                                                                     GCGCCTGGATCACCCCGCCGCTGGCCGGCGCTTTCCGGCAGCACACCGGCCAGCGGCGGGGTGATCCAGGCGCCGACGAAAGTCGACAGCACGATCAGCACGCCCAGCGGCAGCCAGTGGCTGATGCCGTGGCCAGCGTGGGCTTCGGTCTTGGCTTCGCCGTGG                                                    <  1:1056086/165‑1                                                                                                                                                                                                                     GCGCCTGGATCACCCCGCCGCTGGCCGGCGCTTTCCGGCAGCACACCGGCCAGCGGCGGGGTGATCCAGGCGCCGACGAAAGTCGACAGCACGATCAGCACGCCCAGCGGCAGCCAGTGGCTGATGCCGTGGCCAGCGTGGGCTTCGGTCTTGGCTTCGCCGTGG                                                    >  2:1056083/1‑165                                                                                                                                                                                                                              cCACCCCGCCGCTGGCCGGCGCTTTCCGGCCGCACACCGGCCAGCGCCGGGGTGATCCAGGCGCCGACGAAAGTCGACAGCACGATCAGCACGCCCAGCGGCAGCCAGTGGCTGATGCCGTGGCCA                                                                                  <  2:887776/125‑1                                                                                                                                                                                                                                 CCCCGCCGCTGGCCGGCGCTTTCCGGCAGCACACCGGCCAGCGGCGGGGTGATCCAGGCGCCGACGAAAGTCGACAGCACGATCAGCACGCCCAGCGGCAGCCAGTGGCTGATGCCGTGGCCAGCGTGGGCTTCGGTCTTGGCTTCGCCGTGGAAGGCGATGAA                                         <  1:645537/164‑1                                                                                                                                                                                                                                          TGGCCGGCGCTTTCCGGCAGCACACCGGCCAGCGGCGGGGTGATCCAGGCGCCGACGAAAGTCGACAGCACGATCAGCACGCCCAGCGGCAGCCAGTGGCTGATGCCGTGGCCAGCGTGGGCTTCGGTCTTGGCTTCGCCGTGGAAGGCGATGAAGATCAGGCGGAAGGTGTACAGCGAGGTCATGAACGCGCC  <  2:382671/194‑1                                                                                                                                                                                                                                                GCGCTTTCCGGCAGCACACCGGCCAGCGGCGGGGGGATCCAGGCGCCGACGAAGGTCGACAGCACGATCAGCACGCCCAGCGGCAGCCAGTGGCTGATGCCGTGGCCAGCGTGGGCTTCGGTCTTGGCTTCGCCGTGGAAGGCGATGAAGATCAGGCGGAAGGTGTAC                      <  2:275/168‑1                                                                                                                                                                                                                                                                                                                                                                                                                                             CTCCAAGGACGAGATCCTCTGGGAAGCCTTCGCCAGCGGCAACACCGGCCTGCTGTATGCCGGCCTGGTAGGCGCGTTCATGACCTCGCTGTACACCTTCCGCCTGATCTTCATCGCCTTCCACGGCGAAGCCAAGACCGAAGCCCACGCTGGCCACGGCATCAGCCACTGGCTGCCGCTGGGCGTGCTGATCGTGCTGTCGACTTTCGTCGGCGCCTGGATCACCCCGCCGCTGGCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/4667431‑4667670 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggccggCGCTTTCCGGCAGCACACCGGCCAGCGGCGGGGTGATCCAGGCGCCGACGAAAGTCGACAGCACGATCAGCACGCCCAGCGGCAGCCAGTGGCTGATGCCGTGGCCAGCGTGGGCTTCGGTCTTGGCTTCGCCGTGGAAGGCGATGAAGATCAGGCGGAAGGTGTACAGCGAGGTCATGAACGCGCC  <  AE015451/4667687‑4667501

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.