| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AE015451 | = 4681791 | 45 (0.780) | 5 (0.090) | 4/324 | NT | 10.2% | coding (81/1431 nt) | mltD | Membrane‑bound lytic murein transglycosylase D |
| ? | AE015451 | = 4681800 | 45 (0.820) | coding (90/1431 nt) | mltD | Membrane‑bound lytic murein transglycosylase D | |||||
TTCAAACAACTCGCATGTCGCTGTTTTTGCTGCCTTGAGGTCTTGGAAGGACACCTTCTGATAACCGCAAGATATATCGCAAGTGATGGTCAAAGGTTGACCAGGCCCGGAGCGGTTTCTAGAATCGCCGAACTTTTTCGCCCGGATACCTGTATCAGCCGATGTCTTCCCGTAGCCGCAGAACCTCTCATTCCGTCGCCCTGACGCGCCTGGCCCAAATCAGTGCGCTGGCCCTGGCAGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AE015451/4681550‑4681791‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggcagccCACCAAGGTGGCTGCCAGGGCCAGCGCACTGATTTGGGCCAGGCGCGTCAGGGCGACGGAATGAGAGGTTCTGCGGCTACGGGAAGACATCGGCTGATACAGGTATCCGGGCGAAAAAGTTCGGCGATTCTAGAAACCGCTCCGGGCCTGGTCAACCTTTGACCATCACTTGCGATATATCTTGCGGTTATCAGAAGGTGTCCTTCCAAGACCTCAAGGCAGCAAAA < AE015451/4681800‑4681574 TTCAAACAACTCGCATGTCGCTGTTTTTGCTGCCTTGAGGTCTTGGAAGGACACCTTCTGATAACCGCAAGATATATCGCAAGTGATGGTCAAAGGTTGACCAGGCCCGGAGCGGTTTCTAGAATCGCCGAACTTTTTCGCCCGGATACCTGTATCAGCCGATGTCTTCCCGTAGCCGCAGAACCTCTCATTCCGTCGCCCTGACGCGCCTGGCCCAAATCAGTGCGCTGGCCCT < 1:584964/235‑1TTCAAACAACTCGCATGTCGCTGTTTTTGCTGCCTTGAGGTCTTGGAAGGACACCTTCTGATAACCGCAAGATATATCGCAAGTGATGGTCAAAGGTTGACCAGGCCCGGAGCGGTTTCTAGAATCGCCGAACTTTTTCGCCCGGATACCTGTATCAGCCGATGTCTTCCCGTAGCCGCAGAACCTCTCATTCCGTCGCCCTGACGCGCCTGGCCCAAATCAGTGCGCTGGCCCT < 1:703736/235‑1 AGGACACCTTCTGATAACCGCAAGATATATCGCAAGTGATGGTCAAAGGTTGACCAGGCCCGGAGCGGTTTCTAGAATCGCCGAACTTTTTCGCCCGGATACCTGTATCAGCCGATGTCTTCCCGTAGCCGCAGAACCTCTCATTCCGTCGCCCTGACGCGCCTGGCCCAAATCAGTGCGCTGGCCCTGGCAGC > 2:872307/1‑194 GCCGATGTCTTCCCGTAGCCGCAGAACCTCTCATTCCGCCGCCCTGACGCGCCTGGCCCAAATCAGTGCGCTGGCCCTGG < 2:513403/80‑1 CCCTGACGCGCCTGGCCCAAATCAGTGCGCTGGCCCTGGCAGCCCACCAAGGTGGCTGCCAGGGCCAGCGCACTGATTTGGGCCAGGCGCGTCAGGGCGACGGAATGAGAGGTTCTGCGGCTACGGGAAGACATC < 1:931093/135‑1 CCCTGACGCGCCTGGCCCAAATCAGTGCGCTGGCCCTGGCAGCCCACCAAGGTGGCTGCCAGGGCCAGCGCACTGATTTGGGCCAGGCGCGTCAGGGCGACGGAATGAGAGGTTCTGCGGCTACGGGAAGACATC > 2:931090/1‑135 GCTGGCCCTGGCAGCCCACCAAGGTGGCTGCCAGGGCCAGCGCACTGCTTTGGGCCAGGCGCGTCAGGGCGACGGAATGAGAGGTTCTGCGGCTACGGGAAGACATCGGCTGATACAGGTATCCGGGCGAAAAAGTTCGGCGATTCTAGAAACCGCTCCGGGCCTGGTCAACCTTTGACCATCACTTGCGATATATCTTGCGGTTATCA > 1:525061/1‑209 GCTGGCCCTGGCAGCCCACCAAGGTGGCTGCCAGGGCCAGCGCACTGATTTGGGCCAGGCGCGTCAGGGCGACGGAATGAGAGGTTCTGCGGCTACGGGAAGACATCGGCTGATACAGGTATCCGGGCGAAAAAGTTCGGCGATTCTAGAAACCGCTCCGGGCCTGGTCAACCTTTGACCATCACTTGCGATATATCTTGCGGTTATCAG < 1:883705/210‑1 GCTGGCCCTGGCAGCCCACCAAGGTGGCTGCCAGGGCCAGCGCACTGATTTGGGCCAGGCGCGTCAGGGCGACGGAATGAGAGGTTCTGCGGCTACGGGAAGACATCGGCTGATACAGGTATCCGGGCGAAAAAGTTCGGCGATTCTAGAAACCGCTCCGGGCCTGGTCAACCTTTGACCATCACTTGCGATATATCTTGCGGTTATCAG > 2:883702/1‑210 TGGCAGCCCACCAAGGTGGCTGCCAGGGCCAGCGCACTGATTTGGGCCAGGCGCGTCAGGGCGACGGAATGAGAGGTTCTGCGGCTACGGGAAGACATCGGCTGATACAGGTATCCGGGCGAAAAAGTTCGGCGATTCTAGAAACCGCTCCGGGCCTGGTCAACCTTTGACCATCACTTGCGATATATCTTGCGGTTATCAGAAGGTGTCCTTCCAAGACCTCAAGGCAGCAAAA > 1:6235/1‑235 TGGCAGCCCACCAAGGTGGCTGCCAGGGCCAGCGCACTGATTTGGGCCAGGCGCGTCAGGGCGACGGAATGAGAGGTTCTGCGGCTACGGGAAGACATCGGCTGATACAGGTATCCGGGCGAAAAAGTTCGGCGATTCTAGAAACCGCTCCGGGCCT < 1:599822/157‑1 CAGCCCACCAAGGTGGCTGCCAGGGCCAGCGCACTGATTTGGGCCAGGCGCGTCAGGGCGACGGAATGAGAGGTTCTGCGGCTACGGGAAGACATCGGCTGATACAGGTATCCGGGCGAAAAAGTTCGGCGATTCTAGAAACCGCTCCGGGCCTGGTCAACCTTTGACCATCACTTGg > 2:680838/1‑177 TTCAAACAACTCGCATGTCGCTGTTTTTGCTGCCTTGAGGTCTTGGAAGGACACCTTCTGATAACCGCAAGATATATCGCAAGTGATGGTCAAAGGTTGACCAGGCCCGGAGCGGTTTCTAGAATCGCCGAACTTTTTCGCCCGGATACCTGTATCAGCCGATGTCTTCCCGTAGCCGCAGAACCTCTCATTCCGTCGCCCTGACGCGCCTGGCCCAAATCAGTGCGCTGGCCCTGGCAGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AE015451/4681550‑4681791‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggcagccCACCAAGGTGGCTGCCAGGGCCAGCGCACTGATTTGGGCCAGGCGCGTCAGGGCGACGGAATGAGAGGTTCTGCGGCTACGGGAAGACATCGGCTGATACAGGTATCCGGGCGAAAAAGTTCGGCGATTCTAGAAACCGCTCCGGGCCTGGTCAACCTTTGACCATCACTTGCGATATATCTTGCGGTTATCAGAAGGTGTCCTTCCAAGACCTCAAGGCAGCAAAA < AE015451/4681800‑4681574 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |