New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | AE015451 | = 4703829 | 46 (0.800) | 5 (0.090) | 5/328 | NT | 10.6% | coding (1335/1695 nt) | kdpA | potassium‑transporting ATPase A chain |
? | AE015451 | = 4703830 | 40 (0.720) | coding (1334/1695 nt) | kdpA | potassium‑transporting ATPase A chain |
AGCTGTTCTGCCCCAGCGGCGCGCTTTTTTTCGCCGCCAGGCTGCCGGCCAACGCCAGTATCGGCAGGATGTAGCCGAAGCGGCCGATGAGCATGGCCAGGCCGATCATCAGGTTGTGGTACACGGTGTTGGCGCCAAACCCGGCAAAGGCCGAGCCGTTGTTGGCCGAGCCCGAGGTATAGGCGTACAGCAACTGGCTGAAACCATGCGCCCCCGGGTTGGTGACCGCCCCGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AE015451/4703594‑4703829 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccggccCGGCCGGGGCGGTCACCAACCCGGGGGCGCATGGTTTCAGCCAGTTGCTGTACGCCTATACCTCGGGCTCGGCCAACAACGGCTCGGCCTTTGCCGGGTTTGGCGCCAACACCGTGTACCACAACCTGATGATCGGCCTGGCCATGCT < AE015451/4703830‑4703683 AGCTGTTCTGCCCCAGCGGCGCGCTTTTTTTCGCCGCCAGGCTGCCGGCCAACGCCAGTATCGGCAGGATGTAGCCGAAGCGGCCGATGAGCATGGCCAGGCCGATCATCAGGTTGTGGTACACGGTGTTGGCGCCAAACCCGGCAAAGGCCGAGCCGTTGTTGGCCGAGCCCGAGGTATAGGCGTACAGCAACTGGCTGAAACCATGCGCCCCCGGGTTGGTGACCGCCCCGGCC < 1:525577/236‑1 cgAAAGGCCGCGCCGTTGTTGGCCGAGCCCGGGGTATAGGCGTACAGCAACTGGCTGAAACCATGCGCCCCCGGGTTGGTGACCGCCCCGGCC < 2:180692/91‑1 CGTACAGCAACTGGCTGAAACCATGCGCCCCCGGGTTGGTGACCGCCCCGGCCCGGCCGGGGCGGTCACCAACCCGGGGGCGCATGGTTTCAGCCCGTTGCTGTACGCCTATACCTCGGGCGCGGCCAA > 2:161256/1‑129 GGCTGAAACCATGCGCCCCCGGGTTGGTGACCGCCCCGGCCCGGCCGGGGCGGTCACCAACCCGGGGGCGCATGGTTTCAGCCAGTTGCTGTACGCCTCTACCTCGGGCTCGGCCCACAACGGCTCGGCCTTTGCCGGGTTTGGCGCCAACACCGTGTACCACAACCTG > 1:1023159/1‑169 CATGCGCCCCCGGGTTGGTGACCGCCCCGGCCCGGCCGGGGCGGTCACCAACCCGGGGGCGCCTGGTTTCAGCCAGTTGCTGTACGCCTCTACCTCGGGCTCGGCCAAC > 2:323934/1‑109 ATGCGCCCCCGGGTTGGTGACCGCCCCGGCCCGGCCGGGGCGGTCACCAACCCGGGGGCGCATGGTTTCAGCCAGTTGCTGTACGCCTATACCTCGGGCTCGGCCAACAACGGCTCGGCCTTTGCCGGG < 1:296110/129‑1 GTTGGTGACCGCCCCGGCCCGGCCGGGGCGGTCACCAACCCGGGGGCGCATGGCTTCAGCCAGTTGCTGTACGCCTATACCCTGGGCTCGGCCAACAACGGCT > 2:296107/1‑103 ACCGCCCCGGCCCGGCCGGGGCGGTCACCAACCCGGGGGCGCATGGTTTCAGCCAGTTGCTGTACGCCTATACCTCGGGCTCGGCCAACAACGGCTCGGCCTTTGCCGGGTTTGGCGCCAACACCGTGTACCACAACCTGATGATCGGCCTGGCCATGCc > 2:764252/1‑159 AGCTGTTCTGCCCCAGCGGCGCGCTTTTTTTCGCCGCCAGGCTGCCGGCCAACGCCAGTATCGGCAGGATGTAGCCGAAGCGGCCGATGAGCATGGCCAGGCCGATCATCAGGTTGTGGTACACGGTGTTGGCGCCAAACCCGGCAAAGGCCGAGCCGTTGTTGGCCGAGCCCGAGGTATAGGCGTACAGCAACTGGCTGAAACCATGCGCCCCCGGGTTGGTGACCGCCCCGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AE015451/4703594‑4703829 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccggccCGGCCGGGGCGGTCACCAACCCGGGGGCGCATGGTTTCAGCCAGTTGCTGTACGCCTATACCTCGGGCTCGGCCAACAACGGCTCGGCCTTTGCCGGGTTTGGCGCCAACACCGTGTACCACAACCTGATGATCGGCCTGGCCATGCT < AE015451/4703830‑4703683 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |