New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	4848146 =	44 (0.760)	3 (0.050)	3/328	NT	7.0%	coding (235/684 nt)	PP_4263	putative membrane‑bounded cytochrome biogenesis cycZ‑like domain, copper tolerance protein
	?	AE015451	4848162 =	38 (0.690)					coding (251/684 nt)	PP_4263	putative membrane‑bounded cytochrome biogenesis cycZ‑like domain, copper tolerance protein

CCCAGCAGCAATGCCCGAGGGAGGCTGGACACTGGCAGCAATCGCGACGCCACCGGCTGGATATGCCGCCACAGCCCGCGGCCCAGTGCCTCGATACGGGTCAGCCCGCTCCACCAGCCGGCCAGGTACAGGCCCATGGCAATCAGCAGCAGTGCCGCGACCACCCGCAGCGCCAGCGCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/4848327‑4848146 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgctgcGGGTGGTCGCGGCACTGCTGCTGATTGCCATGGGCCTGTACCTGGCCGGCTGGTGGAGCGGGCTGACCCGTATCGAGGCACTGGGCCGCGGGCTGTGGCGGCATATCCAGCCGGTGGCGTCGCGATTGCTGCCAGTGTCCAGCCTCCCTCGGGCATTGCTGCTGGGCGCCCTCTGGGGCTGGCTGCCGTGCGGGCTGGTGTACAGCACCCTGCTGTGGGCGGCCAGCCAGGGCA  >  AE015451/4848162‑4848395                                                                                                                                                                                                                                                                                                                                                                                                                                  CCCAGCAGCAACGCCCGAGGGAGGCTGGACACTGGCAGCAATCGCGCCGCCACCGGCTGGATATGCCGCCACAGCCCGCGGCCCAGTGCCTCGATACGGGTCAGCCCGCTCCACCAGCCGGCCAGGTACAGGCCCATGGCAATCAGCAGCAGTGCCGCGACCACCCGCAGCGCCAGCGCTGCGGGTGGTCGCGGCACT                                                                                                                                                                                                                            <  1:146067/198‑1                 GAGGGAGGCTGGACACTGGCAGCAATCGCGACGCCACCGGCTGGATATGCCGCCACAGCCCGCGGCCCAGTGCCTCGATACGGGTCAGCCCGCTCCACCAGCCGGCCAGGTACAGGCCCATGGCAATCAGCAGCAGTGCCGCGACCACCCGCAGCGCCAGCG                                                                                                                                                                                                                                                >  2:239065/1‑162                                            tCGACGCCACCGGCTGGATATGCCGCCACAGCCCGCGGCCCAGTGCCTCGATACGGGTCAGCCCGCTCCACCAGCCGGCCAGGTACAGGCCCATGGCAATCAGCAGCAGTGCCGCGACCACCCGCAGCGCCAGCGCTG                                                                                                                                                                                                                                             <  2:949059/137‑1                                                                                                                                            CAATCAGCAGCAGTGCCGCGACCACCCGCAGCGCCAGCGCTGCGGGTGGTCGCGGCACTGCTGCTGATTGCCATGGGCCTGTACCTGGCCGGCTGGTGGAGCGGGCTGACCCGTATCGAGGCACTGGGCCGCG                                                                                                                                                  <  1:807309/133‑1                                                                                                                                            CAATCAGCAGCAGTGCCGCGACCACCCGCAGCGCCAGCGCTGCGGGTGGTCGCGGCACTGCTGCTGATTGCCATGGGCCTGTACCTGGCCGGCTGGTGGAGCGGGCTGACCCGTATCGAGGCACTGGGCCGCG                                                                                                                                                  >  2:807306/1‑133                                                                                                                                                                                  GCTGCGGGTGGTCGCGGCACTGCTGCTGATTGCCATGGGCCTGTACCTGGCCGGCTGGTGGAGCGGGCTGACCCGTATCGAGGCACTGGGCCGCGGGCTGTGGCGGCATATCCAGCCGGTGGCGTCGCGATTGCTGCCAGTGTCCAGCCTCCCTCGGGCATTGCTGCTGGGCGCCCTCTGGGGCTGGCTGCCGTGCGGGCTGGTGTACAGCACCCTGCTGTGGGCGGCCAGCCAGG     >  1:404634/1‑236                                                                                                                                                                                   CTGCGGGTGGTCGCGGCCCTGCTGCTGATTGCCATGGGCCTGTACCTGGCCGGCTGGTGGAGCGGGCTGACCCGTATCGAGGCACTGGGCCGCGGGCTGTGGCGGCATATCCAGCCGGTGGCGTCGCGATTGCTGCCAGTGTCC                                                                                                <  1:462168/144‑1                                                                                                                                                                                      CGGGTGGTCGCGGCACTGCTGCTGATTGCCATGGGCCTGTACCTGGCCGGCTGGTGGAGCGGGCTGACCCGTATCGAGGCACTGGGCCGCGGGCTGTGGCGGCATATCCAGCCGGTGGCGTCGCGATTGCTGCCAGTGTCCAGCCTCCCTCGGGCATTGCTGCTGGGCGCCCTCTGGGGCTGGCTGCCGTGCGGGCTGGTGTACAGCACCCTGCTGTGGGCGGCCAGCCAGGGCA  >  1:491726/1‑235                                                                                                                                                                                                                                                                                                                                                                                                                                  CCCAGCAGCAATGCCCGAGGGAGGCTGGACACTGGCAGCAATCGCGACGCCACCGGCTGGATATGCCGCCACAGCCCGCGGCCCAGTGCCTCGATACGGGTCAGCCCGCTCCACCAGCCGGCCAGGTACAGGCCCATGGCAATCAGCAGCAGTGCCGCGACCACCCGCAGCGCCAGCGCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/4848327‑4848146 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgctgcGGGTGGTCGCGGCACTGCTGCTGATTGCCATGGGCCTGTACCTGGCCGGCTGGTGGAGCGGGCTGACCCGTATCGAGGCACTGGGCCGCGGGCTGTGGCGGCATATCCAGCCGGTGGCGTCGCGATTGCTGCCAGTGTCCAGCCTCCCTCGGGCATTGCTGCTGGGCGCCCTCTGGGGCTGGCTGCCGTGCGGGCTGGTGTACAGCACCCTGCTGTGGGCGGCCAGCCAGGGCA  >  AE015451/4848162‑4848395

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.