New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 4902861	51 (0.880)	6 (0.110)	4/320	NT	11.1%	intergenic (+47/+72)	PP_4310/PP_4311	putative Hydantoin racemase/putative D‑amino acid dehydrogenase 2 small subunit
	?	AE015451	= 4902896	48 (0.890)					intergenic (+82/+37)	PP_4310/PP_4311	putative Hydantoin racemase/putative D‑amino acid dehydrogenase 2 small subunit

TGTGGCGGCATGGCCGGGCTGGACGAGCAGATTCGCCAACGCACCGGCGTGCCGGTGGTGGATGGTGTGAGTGCAGCGGTGACCATTGCCGAATCGCTGGTGCGCATGGGTTTGAGCACGTCCAAAGTGCGCACCTATGCGACGCCACGGGCGAAGAAAGTGGTGGGCTGGCCGATGCGCTTCGGCCGCTAGAGATCCTTCGCCTGTACCGGCCTCTTCGCGGCTGATGCCGCTCCTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/4902623‑4902861 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgctcctacGAGGACCCCACGGTATTCAGGCTTGTGCTGGTCCGGTAGGAGCGGCATCAGCCGCGAAGAGGCCGGTACAGGCGAAGGATCTCTAGCGGCCGAAGCGCATCGGCCAGCCCACCACTTTCTTCGCCCGTGGCGTCGCATAGGTGCGCACTTTGGACGTGCTCAAACCCATGCGCACCAGCGATTCGGCAATGGTCACCGCTGCACTC  <  AE015451/4902896‑4902691                                                                                                                                                                                                                                                                                                                                                                                                                                                               TGTGGCGGCATGGCCGGGCTGGACGAGCAGATTCGCCAACGCACCGGCGTGCCGGTGGTGGATGGTGTGAGTGCAGCGGTGACCATTGCCGAATCGCTGGTGCGCATGGGTTTGAGCACGTCCAAAGTGCGCACCTATGCGACGCCACGGGCGAAGAAAGTGGTGGGCTGGCCGATGCGCTTCGGCCGCTAGAGATCCTTCGCCTGTACCGGCCTCTTCGCGGCTGATGCCGCTCC                                                                                                                                                                                                                   <  1:384469/236‑1  GTGGCGGCATGGCCGGGCTGGACGAGCAGATTCGCCAACGCACCGGCGTGCCGGTGGTGGATGGTGTGAGTGCAGCGGTGACCATTGCCGAATCGCTGGTGCGCATGGGTTTGAGCACGTCCAAAGTGCGCACCTATGCGACGCCACGGGCGAAGAAAGTGGTGGGCTGGCCGATGCGCTTCGGCCGCTAGAGATCCTTCGCCTGTACCGGCCTCTTCGCGGCTGATGCCGCTCC                                                                                                                                                                                                                   >  1:674610/1‑235                                        CGCACCGGCGGGCCGGTGGTGGATGGTGTGAGTGCAGCGGTGACCATTGCCGAATCGCTGGTGCGCATGGGTTTGAGCACGTCCAAAGTGCGCACCTATGCGACGCCACGGGCGAAGAAAGTGGTGGGCTGGCCGATGCGCTTCGGCCGCTAGAGATCCTTCGCCTGTACCGGCCTCTTCGCGGCTGATGC                                                                                                                                                                                                                         <  1:201905/191‑1                                            CCGGGGTGCCGGTGGTGGATGGTGTGAGTGCAGCGGTGACCATTGCCGAATCGCTGGTGCGCATGGGTTTGAGCACGTCCAAAGTGCGCACCTATGCGACGCCACGGGCGAAGAAAGTGGTGGGCTGGCCGATGCGCTTCGGCCGCTAGAGATCCTTCGCCTGTACCGGCCTCTTCGCGGCTGATGCC                                                                                                                                                                                                                        <  2:150492/188‑1                                            CCGGCGTGCCGGTGGTGGATGGTGTGAGTGCAGCGGTGACCAGTGCCGAATCGCTGGTGCGCATGGGTTTGAGCACGTCCAAAGTGCGCACCTATGCGACGCCACGGGCGAAGAAAGTGGTGGGCTGGCCGATGCGCTTCGGCCGCTAGAGATCCTTCGCCTGTACCGGCCTCTTCGCGGCTGATGCC                                                                                                                                                                                                                        <  1:750065/188‑1                                                 GTGCCGGTGGTGGATGGTGTGAGTGAAGCGGTGACCATTGCCGAATCGCTGGTGCGCATGGGTTTGAGCACGTCCAAAGTGCGCACCTATGCGACGCCACGGGCGAAGAAAGTGGTGGGCTGGCCGATGCGCTTCGGCCGCTAGAGATCCTTCGCCTGTACCGGCCTCTTCGCGGCTGATGC                                                                                                                                                                                                                         <  1:305536/182‑1                                                                              GGTGACCATTGCCGAATCGCTGGTGCGCAGGGGTTTGAGCACGTCCAACGTGCGCACCTATGCGACGCCACGGGCGAAGAAAGTGGTGGGCTGGCCGATGCGCTTCGGCCGCTAGAGATCCTTCGCCTGTACCGGCCTCTTCGCGGCTGATGCCGCTCCTACGAGGACCCCACGGTATTCAGGCTTG                                                                                                                                                                                       <  1:148776/187‑1                                                                                                            GGGTTTGAGCACGTCCAAAGTGCGCACCTATGCGAGGCCACGGGCGAAGAAAGTGGTGGGCTGGCCGATGCGCTTCGGCCGCTAGAGATCCTTCGCCTGTACCGGCCTCTTCGCGGCTAAAGCCGCTCCTACGAGGACCCCACGGTATTCAGGCTTGTGCTGGTCCGGTA                                                                                                                                                                          <  1:729536/170‑1                                                                                                                                       CTATGCGACGCCACGGGCGAAGAAAGTGGTGGGCTGGCCGATGCGCTTCGGCCGCTAGAGATCCTTCGCCTGTACCGGCCTCTTCGCGGCTGATGCCGCTCC                                                                                                                                                                                                                   <  2:124670/102‑1                                                                                                                                       CTATGCGACGCCACGGGCGAAGAAAGTGGTGGGCTGGCCGATGCGCTTCGGCCGCTAGAGATCCTTCGCCTGTACCGGCCTCTTCGCGGCTGATGCCGCTCC                                                                                                                                                                                                                   >  1:124672/1‑102                                                                                                                                                    CGGGCGAAGAAAGTGGTGGGCTGGCCGATGCGCTTCGGCCGCTAGAGATCCTTCGCCTGTACCGGCCTCTTCGCGGCTGATGCCGCTCCTACGAGGACCCCACGGTATTCAGGCTTG                                                                                                                                                                                       >  1:627048/1‑117                                                                                                                                                    CGGGCGAAGAAAGTGGTGGGCTGGCCGATGCGCTTCGGCCGCTAGAGATCCTTCGCCTGTACCGGCCTCTTCGCGGCTGATGCCGCTCCTACGAGGACCCCACGGTATTCAGGCTTG                                                                                                                                                                                       <  2:627045/117‑1                                                                                                                                                                                                                       TCTTCGCGGCTGATGCCGCTCCTACGAGGACCCCACGGTATTCAGGCTTGTGCTGGTCCGGTAGGAGCGGCATCAGCCGCGTAGAGGCCGGTCCAGGCGCAGGATCTCTAGCGGCCGAAGCGCATCGGC                                                                                                        >  2:394002/1‑129                                                                                                                                                                                                                          TCGCGGCTGAAGCCGCTCCTACGAGGATCCCACGGTATTCAGGCTTGTGCTGGTCCGGTAGGAGCGGCATCAGCCGCGAAGAGGCCGGTACAGGCGAAGGATCTCTAGCGGCCGAAGCGCATCGGCCAGCCCACCACTTTCTTCGCCCGTGGCGTCGCATAGGTGCGCACTTTG                                                        <  1:773642/174‑1                                                                                                                                                                                                                                     GCCGCTCCTACGAGGACCCCACGGTATTCAGGCTTGTGCTGGTCCGGTAGGAGCGGCATCAGCCGCGAAGAGGCCGGTACAGGCGAAGGATCTCTAGCGGCCGAAGCGCATCGGCCAGCCCACCACTTTCTTCGCCCGTGGCGTCGCATAGGTGCGCACTTTGG                                                       <  1:625143/164‑1                                                                                                                                                                                                                                      CCGCTCCTACGAGGACCCCACGGTATTCAGGCTTGTGCTGGTCCGGTAGGAGCGGCATCAGCCGCGAAGAGGCCGGTACAGGCGAAGGATCTCTAGCGGCCGAAGCGCATCGGCCAGCCCACCACTTTCTTCGCCCGTGGCGTCGCATAGGTGCGCACTTTGGACGTGCTCAAACCCAT                                       >  2:807589/1‑179                                                                                                                                                                                                                                             TACGAGGACCCCACGGTATTCAGGCTTGTGCTGGTCCGGTAGGAGCGGCATCAGCCGCGAAGAGGCCGGTACAGGCGAAGGATCTCTAGCGGCCGAAGCGCATCGGCCAGCCCACCACTTTCTTCGCCCGTGGCGTCGCATAGGTGCGCACTTTGGACGTGCTCAAACCCATGCGCACCAGCGATTCGGCAATGGTCACCGCTGCACTC  <  2:840929/209‑1                                                                                                                                                                                                                                             TACGAGGACCCCACGGTATTCAGGCTTGTGCTGGTCCGGTAGGAGCGGCATCAGCCGCGAAGAGGCCGGTACAGGCGAAGGATCTCTAGCGGCCGAAGCGCATCGGCCAGCCCACCACTTTC                                                                                         <  2:335389/122‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                               TGTGGCGGCATGGCCGGGCTGGACGAGCAGATTCGCCAACGCACCGGCGTGCCGGTGGTGGATGGTGTGAGTGCAGCGGTGACCATTGCCGAATCGCTGGTGCGCATGGGTTTGAGCACGTCCAAAGTGCGCACCTATGCGACGCCACGGGCGAAGAAAGTGGTGGGCTGGCCGATGCGCTTCGGCCGCTAGAGATCCTTCGCCTGTACCGGCCTCTTCGCGGCTGATGCCGCTCCTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/4902623‑4902861 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgctcctacGAGGACCCCACGGTATTCAGGCTTGTGCTGGTCCGGTAGGAGCGGCATCAGCCGCGAAGAGGCCGGTACAGGCGAAGGATCTCTAGCGGCCGAAGCGCATCGGCCAGCCCACCACTTTCTTCGCCCGTGGCGTCGCATAGGTGCGCACTTTGGACGTGCTCAAACCCATGCGCACCAGCGATTCGGCAATGGTCACCGCTGCACTC  <  AE015451/4902896‑4902691

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.