New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 5036488	NA (NA)	3 (0.050)	3/328	NT	NA	coding (296/321 nt)	PP_4441	transposase
	?	AE015451	= 5036555	NA (NA)					coding (46/336 nt)	PP_4442	transposase

TGCAACCTGGCGCAACCGTGTCCAGTGTCGCCATCAGCCACGGCATCAATGCCAACGTCATCCGCAAATGGCTGCCGCTTTATCGAGATCAGCCTGCAGCAGCTTCAATACCGGCATTCGTCCCACTAAAAACCGCGCCTAAACGGCCAGTCGAAGCGTCAGTGATCATCGAGTTGCCTATGACCGGGCAAGTGATCACGGTGAAATGGCCAACCTCAGATCCTGAGGGCTGCGCGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/5036251‑5036488 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcgcaTATCCATCGGCTCGGTGGCCAGCCAGATCGCATCGATGCGGATCATTGAGCGACAGCCCGGATAAATTGCGCGCAGCCCTCAGGATCTGAGGTTGGCCATTTCACCGTGATCACTTGCCCGGTCATAGGCAACTCGATGATCACTGACGCTTCGACTGGCCGTTTAGGCGCGGTTTTTAGTGGGACGAATGCCG  <  AE015451/5036555‑5036362                                                                                                                                                                                                                                                                                                                                                                                                                                                  TGCAACCTGGCGCAACCGTGTCCAGTGTCGCCATCAGCCACGGCATCAATGCCAACGTCATCCGCAAATGGCTGCCGCTTTATCGAGATCAGCCTGCAGCAGCTTCAATACCGGCATTCGTCCCACTAAAAACCGCGCCTAAACGGCCAGTCGAAGCGTCAGTGATCATCGAGTTGCCTATGACCGGGCAAGTGATCACGGTGAAATGGCCAACCTCAGATCCTGAGGGCTGCGC                                                                                                                                                                                                       >  1:557084/1‑235                                                                                                                                                                                   TATGACCGGGCAAGTGATCACGGTGAAATGGCCAACCTCAGATCCTGAGGGCTGCGCGCATATCCATCGGCTCGc                                                                                                                                                                                     >  2:293948/1‑74                                                                                                                                                                                                         GTGAAATGGCCAACCTCAGATCCTGAGGGCTGCGCGCATATCCATCGGCTCGGTGGCCAGCCAGATCGCATCGATG                                                                                                                                                              >  1:995271/1‑76                                                                                                                                                                                                             AATGGCCAACCTCAGATCCTGAGGGCTGCGCGCATATCCATCGGCTCGGTGGCCAGCCAGATCGCATCGATG                                                                                                                                                              >  2:808615/1‑72                                                                                                                                                                                                                                        GCGCGCATATCCATCGGCTCGGTGGCCAGCCAGATCGCATCGATGCGGATCATTGAGCGACAGCCCGGATAAATTGCGCGCAGCCCTCAGGATCTGAGGTTGGCCATTTCACCGTGATCACTTGCCCGGTCATAGGCAACTCGATGATCACTGACGCTTCGACTGGCCGTTT                               >  2:393036/1‑172                                                                                                                                                                                                                                        GCGCGCATATCCATCGGCTCGGTGGCCAGCCAGATCGCATCGATGCGGATCATTGAGCGACAGCCCGGATAAATTGCGCGCAGCCCTCAGGATCTGAGGTTGGCAATTTCACCGTGATCACTTGCCCGGTCATAGGCAACTC                                                             <  2:590568/142‑1                                                                                                                                                                                                                                         nGCGCATATCCATCGGCTCGGTGGCCAGCCAGATCGCATCGATGCGGATCATTGAGCGACAGCCCGGATAAATTGCGCGCAGCCCTCAGGATCTGAGGTTGGCCATTTCACCGTGAT                                                                                     <  1:465630/116‑1                                                                                                                                                                                                                                          GCGCATATCCATCGGCTCGGTGGCCAGCCAGATCGCATCGATGCGGATCATTGAGCGACAGCCCGGATAAATTGCGCGCAGCCCTCAGGATCTGAGGTTGGCCATTTCACCGTGATCACTTGCCCGGTCATAGGCAACTCGATGATCACTGACGCTTCGACTGGCCGTTTAGGCGCGGGTTTTAGTGGGACGAATGCCG  >  1:180229/1‑199                                                                                                                                                                                                                                          GCGCATATCCATCGGCTCGGTGGCCAGCCAGATCGCATCGATGCGGATCATGGAGCGACAGCCCGGATAAATTGCGCGCAGCCCTCATGATCTGAGGT                                                                                                       <  2:504951/98‑1                                                                                                                                                                                                                                            GCATAACCAGCGGCTCGGTGGCCAGCCCGATCGCATCGATGCGGATCATTGAGCGACAGCCCGGATAAATTGCGCGCAGCCCTCAGGATCTGAGGTTGGCCATTTCACCGTGATCACTTGCCCGGTCATAGGCCACTCGATGATCACTGACGCTTCGAC                                        <  2:285729/159‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                  TGCAACCTGGCGCAACCGTGTCCAGTGTCGCCATCAGCCACGGCATCAATGCCAACGTCATCCGCAAATGGCTGCCGCTTTATCGAGATCAGCCTGCAGCAGCTTCAATACCGGCATTCGTCCCACTAAAAACCGCGCCTAAACGGCCAGTCGAAGCGTCAGTGATCATCGAGTTGCCTATGACCGGGCAAGTGATCACGGTGAAATGGCCAACCTCAGATCCTGAGGGCTGCGCGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/5036251‑5036488 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcgcaTATCCATCGGCTCGGTGGCCAGCCAGATCGCATCGATGCGGATCATTGAGCGACAGCCCGGATAAATTGCGCGCAGCCCTCAGGATCTGAGGTTGGCCATTTCACCGTGATCACTTGCCCGGTCATAGGCAACTCGATGATCACTGACGCTTCGACTGGCCGTTTAGGCGCGGTTTTTAGTGGGACGAATGCCG  <  AE015451/5036555‑5036362

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.