New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 5036488	NA (NA)	3 (0.050)	3/328	NT	NA	coding (296/321 nt)	PP_4441	transposase
	?	AE015451	= 5036555	NA (NA)					coding (46/336 nt)	PP_4442	transposase

CACGGTGAAATGGCCAACCTCAGATCCTGAGGGCTGCGCGCAATTTATCCGGGCTGTCGCTCAATGATCCGCATCGATGCGATCTGGCTGGCCACCGAGCCGATGGATATGCGCGCCGGCACCGAAACGGCATTGGCCCGGGTGATCGCGGTGTTCGGTG  >  AE015451/5036447‑5036606                                          |                                                                                                                       cagggTGAAATGTCCACCCTCAGATCCTGGGGGCTGCGCGCAATTTATCCGGGCTGTCGCTCAATGATCCGCATCGATGCGATCTGGCTGGCCACCGAGCCGATGGATATGCGCGCCGGCACCGAAACGGCATTGGCCCGGGTGATCGCGGTGTTCGGTg  <  2:344395/157‑1 (MQ=0)                                          |                                                                                                                       CACGGTGAAATGGCCAACCTCAGATCCTGAGGGCTGCGCGCAATTTATCCGGGCTGTCGCTCAATGATCCGCATCGATGCGATCTGGCTGGCCACCGAGCCGATGGATATGCGCGCCGGCACCGAAACGGCATTGGCCCGGGTGATCGCGGTGTTCGGTG  >  AE015451/5036447‑5036606

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.