New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	5036643 =	NA (NA)	3 (0.050)	3/324	NT	NA	coding (134/336 nt)	PP_4442	transposase
	?	AE015451	5036738 =	NA (NA)					coding (229/336 nt)	PP_4442	transposase

CCGAAACGACGACAAACAGACCGGTCAAATGGCCGGCGATTACAGCATGCTGATCACACCGCCTGCACCAACGCGCAGCCATGGCAAACCCAGTACCAACGCCTGGAGTTGTTCGCTGTCGAGTTCGACCTCGCTGCCATGGCGAATGCCGGGCCAGTGAAACTTGCCTTGATTCAGTCGTCGCGCTGCAAGCCAGACGCCCACGCCGTCGTGCACCAGCACCTTCATCCGGTTGGCCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/5036884‑5036643 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggcccggcATTCGCCATGGCAGCGAGGTCGAACTCGACAGCGAACAACTCCAGGCGTTGGTACTGGGTTTGCCATGGCTGCGCGTTGGTGCAGGCGGTGTGATCAGCATGCTGTAATCGCCGGCCATTTGACCGGTCTGTTTGTCGTCGTTTCGGGCCTGCTCTGGCACAATCGGCGGCATGACTTTCTCGCCCAATCTCGACCAGATGACTCCGGAACAGCTTCGTGCCTTGGCGGCAC  >  AE015451/5036738‑5036969                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            CCGAAACGACGACAAACAGACCGGTCAAATGGCCGGCGATTACAGCATGCTGATCACACCGCCTGCACCAACGCGCAGCCATGGCAAACCCAGTACCAACGCCTGGAGTTGTTCGCTGTCGAGTTCGACCTCGCTGCCATGGCGAATGCCGGGCCAGTGAAACTTGCCTTGATTCAGTCGTCGCGCTGCAAGCCAGACGCCCACGCCGTCGTGCACCAGCACCTTCATCCGGTTG                                                                                                                                                                                                                                                 >  1:630049/1‑235  CGAAACGACGACAAACAGACCGGTCAAATGGCCGGCGATTACAGCATGCTGATCACACCGCCTGCACCAACGCGCAGCAATGGCAAACCCAGTACCAACGCCTGGAGTTGTTCGCTGTCGAGTTCGACCTCGCTGCCATGGCGAATGCCGGGCCAGTGAAACTTGCCTTGATTCAGTCGTCGCGCTGCAAGCCAGACGCCCACGCCGTCGTGCACCAGCACCTTCATCCGGTTGGC                                                                                                                                                                                                                                               >  1:577512/1‑236       CGACGACAAACAGACCGGTCAAATGGCCGGCGATTACAGCATGCTGATCACACCGCCTGCACCAACGCGCAGCCATGGCAAACCCAGTACCAACGCCTGGAGTTGTTCGCTGTCGAGTTCGACCTCGCTGCCATGGCGAATGCCGGGCCAGTGAAACTTGCCTTGATTCAGTCGTCGCGCTGCAAGCCAGACGCCCACGCCGTCGTGCACCAGCACCTTCATCCGGCTGGCCCGG                                                                                                                                                                                                                                           >  1:515646/1‑235                                                                        CGCGCAGCCATGGCAACCCCAGTCCCAACGCCTGGAGTTGTTCGCTGTCGAGTTCGACCTCGCTGCCATGGCGAATGCCGGGCCAGTGAAACTTGCCTTGATTCAGTCGTCGCGCTGCAAGCCAGACGCCCACGCCGTCGTGCACCAGCACCTTCATCCGGTT                                                                                                                                                                                                                                                  <  2:1076952/163‑1                                                                                                      CCTGGAGTTGTTCGCTGTCGAGTTCGACCTCGCTGCCATGGCGAATGCCGGGCCAGTGAAACTTGCCTTGATTCAGTCGTCGCGCTGCAAGCCAGACGCCCACGCCGTCGTGCACCAGCACCTTCATCCGGTTGGC                                                                                                                                                                                                                                               >  1:622597/1‑136                                                                                                             TTGTTCGCTGTCGAGTTCGCCCTCGCTGCCATGGCGAATGCCGGGCCAGTGAACCTTGCCTTGATTCAGTCGTCGCGCTGCAAGCCAGACGCCCACGCCGTCGTGCCCCAGCACCTTCATCCGGTTGGCCCG                                                                                                                                                                                                                                            <  2:249537/132‑1                                                                                                                                                           CAGTGAAACTTGCCTTGATTCAGTCGTCGCGCTGCAAGCCAGACGCCCACGCCGTCGTGCACCAGCACCTTCATCCGGTTGGCCCGGCATTCGCCATGGCAGCGAGGTCGAACTCGACAGCGAACAACTCCAGGCGTTGGTACTGGGTTTGCCATGGCTGCGCGTTGGTGCAGGCGGTGTGATCAGCATGCTGTAATCGCCGGCCATTTGACCGGTCTGTTTGTCGTCGTTTCGGG                                                                                      >  1:666513/1‑236                                                                                                                                                                                                                           GCACCTTCATCCGGTTGGCCCGGCATTCGCCATGGCAGCGAGGTCGAACTCGACAGCGAACAACT                                                                                                                                                                                                 <  2:183401/65‑1                                                                                                                                                                                                                                   ATCCGGTTGACCCGGCCTGCGCCATGTCAGCGAGGTCGAACTCGACAGCGAACAACTCCAGG                                                                                                                                                                                            <  2:258909/62‑1                                                                                                                                                                                                                                          TGGCCCGGCATTCGCCATGGCCGCGAGGTCGAACTCGACAGCGAACAACTCCAGGCGTTGGTACTGGGTTTGCCATGGCTGCGCGTTGGTGCAGGCGGTGTGATCAGCATGCTGTAATCGCCGGCCATTTGACCGGTCTGTTTGTCGTCGTTTCGGGCCTGCTCTGGCACAATCGGCGGCATGACTTTCTCGCCCAATCTCGACCAGATGA                                <  1:285732/211‑1                                                                                                                                                                                                                                               CGGCATTCGCCATGGCAGCGAGGTCGAACTCGACAGCGAACAACTCCAGGCGTTGGTACTGGGTTTGCCATGGCTGCGCGTTGGTGCAGGCGGTGTGATCAGCATGCTGTAATCGCCGGCCATTTGACCGGTCTGTTTGTCGTCGTTTCGGGCCTGCTCTGGCACAATCGGCGGCATGACTTTCTCGCCCAATCTCGACCAGATGACTCCGGAACAGCTTCGTGCCTTGGCGGCAC  <  1:286856/236‑1                                                                                                                                                                                                                                               CGGCATTCGCCATGGCAGCGAGGTCGAACTCGACAGCGAACAACTCCAGGCGTTGGTACTGGGTTTGCCATGGCTGCGCGTTGGTGCAGGCGGTGTGATCAGCATGCTGTAATCGCCGGCCATTTGACCGGTCTGTTTGTCGTCGTTTCGGGCCTGCTCTGGCACAATCGGCGGCATGACTTTCTCGCCCAATCT                                           <  2:586114/195‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            CCGAAACGACGACAAACAGACCGGTCAAATGGCCGGCGATTACAGCATGCTGATCACACCGCCTGCACCAACGCGCAGCCATGGCAAACCCAGTACCAACGCCTGGAGTTGTTCGCTGTCGAGTTCGACCTCGCTGCCATGGCGAATGCCGGGCCAGTGAAACTTGCCTTGATTCAGTCGTCGCGCTGCAAGCCAGACGCCCACGCCGTCGTGCACCAGCACCTTCATCCGGTTGGCCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/5036884‑5036643 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggcccggcATTCGCCATGGCAGCGAGGTCGAACTCGACAGCGAACAACTCCAGGCGTTGGTACTGGGTTTGCCATGGCTGCGCGTTGGTGCAGGCGGTGTGATCAGCATGCTGTAATCGCCGGCCATTTGACCGGTCTGTTTGTCGTCGTTTCGGGCCTGCTCTGGCACAATCGGCGGCATGACTTTCTCGCCCAATCTCGACCAGATGACTCCGGAACAGCTTCGTGCCTTGGCGGCAC  >  AE015451/5036738‑5036969

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.