New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	5039357 =	53 (0.920)	5 (0.090)	5/328	NT	9.6%	coding (658/759 nt)	PP_4445	transposase
	?	AE015451	5039381 =	43 (0.780)					coding (682/759 nt)	PP_4445	transposase

CGGGAAACCTGACACGTCTGGGTGGTTTTCGTTCGGCGGTCTGCCGTTTATGGCGGCAAGCCCTCAAACGTCGTAGCCAGCGTAATCGACTTCAATGGTCACGCTATGGACGCCTTGCTGATCTCTACATACCTAGGCCCAGAAATGCACACCCTTACCCTGAGGATCGCTTCGCGTCACATACCCGAGGCAGGAGCCGTATGCGGTAGTCCCGCACGTACGGATCTGTGCGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/5039590‑5039357 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgcgggACTACCGCATACGGCTCCTGCCTCGGGTATGTGACGCGAAGCGATCCTCAGGGTAAGGGTGTGCATTTCTGGGCCTAGGTATGTAGAGATCAGCAAGGCGTCCATAGCGTGACCATTGAAGTCGATTACGCTGGCTACGACGTTTGAGGGCTTGCCGCCATAAACGGCAGACCGCCGAACGAAAACCACCCAGACGTGTCAGGTTTCCCGGCACCGCGTGGTAATTGAAGTAACC  >  AE015451/5039381‑5039615                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       CGGGAAACCTGACACGTCTGGGTGGTTTTCGTTCGGCGGTCTGCCGTTTATGGCGGCAAGCCCTCAAACGTCGTAGCCAGCGTAATCGACTTCAATGGTCACGCTATGGACGCCTTGCTGATCTCTACATACCTAGGCCCAGAAATGCACACCCTTACCCTGAGGATCGCTTCGCGTCACATACCCGAGGCAGGAGCCGTATGCGGTAGTCCCGCACGTACGGATCTGTGCG                                                                                                                                                                                                                                               <  1:689265/232‑1   GGAAACCTGACACGTCTGGGTGGTTTTCGTTCGGCGGTCTGCCGTTTATGGCGGCAAGCCCTCAAACGTCGTAGCCAGCGTAATCGACTTCAATGGTCACGCTATGGACGCCTTGCTGATCTCTACATACCTAGGCCCAGAAATGCACACCCTTACCCTGAGGATCGCTTCGCGTCACATACCCGAGGCAGGAGCCGTATGCGGTAGTCCCGCACGTACGGATCTGTGCG                                                                                                                                                                                                                                               <  1:890158/230‑1              ACGTCTGGGTGGTTTTCGTTCGGCGGTCTGCCGTTTATGGCGGCAAGCCCTCAAACGTCGTAGCCAGCGTAATCGACTTCAATGGTCACGCTATGGACGCCTTGCTGATCTCTACATACCTAGGCCCAGAAATGCACACCCTTACCCTGAGGATCGCTTCGCGTCACATACCCGAGGCAGGAGCCGTATGCGGTAGTCCCGCACGTACGGATCTGTGCGGGACTACCGCATACG                                                                                                                                                                                                                                <  2:518546/234‑1                                            CCGTTTATGGCGGCAAGCCCTCAAACGTCGTAGCCAGCGTAATCGACTTCAATGGTCACGCTATGGACGCCTTGCTGATCTCTACATACCTAGGCCCAGAAATGCACACCCTTACCCTGAGGATCGCTTCGCGTCACATACCCGAGGCAGGAGCCGTATGCGGTAGTCCCGCACGTACGGATCTGTGCGGG                                                                                                                                                                                                                                             <  2:679667/191‑1                                                                    ACGTCGTAGCCAGCGTAATCGACTTCAATGGTCACGCTATGGCCGCCTTGCTGATCTCTCCATCCCTAGGCCCAGAAATGCACACCCTTCCCCTGAGGATCGCTTCGCGTCACATACCCGAGGCAGGAGCCGTATGCGGTAGTCCCGCACGTACGGATCTGTGCGGGA                                                                                                                                                                                                                                            <  2:187228/168‑1                                                                                    AATCGACTTCAATGGTCACGCTATGGACGCCTTGCTGATCTCTACATACCTAGGCCCAGAAATGCACACCCTTACCCTGAGGATCGCTTCGCGTCACATACCCGAGGCAGGAGCCGTATGCGGTAGTCCCGCACGTACGGATCTGTGCGGGACTACCGCATACGGCTCCTGCCTCGGGTATGTGACGCGAA                                                                                                                                                                                                     <  1:370594/191‑1                                                                                                           TGGACGCCGTGCTGATGTCTACATACCTAGGCCCAGAAATGCACACCCTTACCCTGAGGATCGCTTCGCGTCACATACCCGAGGCAGGAGCCGTATGCGGTAGTCCCGCACGTACGGATCTGTGCGGGACTACCGC                                                                                                                                                                                                                                     <  2:67222/136‑1                                                                                                                                        GGCCCAGAAATGCACACCCTTACCCTGAGGATCGCTTCGCGACACATACCCGAGGCAGGAGCCGTATGCGGTAGTCCCGCACGTACGGATCTGTGCGGGACTACCGCATACGGCTCCTGCCTCGGGTATGTGACGCGAAGCGATCCTCAGGGTAAGGGTGTGCATTTCTGGGCCTAGGTATGTAGAGATC                                                                                                                                                  <  1:570155/190‑1                                                                                                                                         GCCCAGAAATGCACACCCTTACCCTGAGGATCGCTTCGCGTCACATACCCGAGGCAGGAGCCGTATGCGGTAGTCCCGCACGTACGGATCTGTGCGGGACTACCGCATACGGCTCCTGCCTCGGGTATGTGACGCGAAGCGATCCTCAGGGTAAGGGTGTGCATTTCTGG                                                                                                                                                                     <  1:784527/170‑1                                                                                                                                                               CCTGAGGATCGCTTCGCGTCACATACCCGAGGCAGGAGCCGTATGCGGTAGTCCCGCACGTACGGATCTGTGCGGG                                                                                                                                                                                                                                             >  2:304318/1‑76                                                                                                                                                               CCTGAGGATCGCTTCGCGTCACATACCCGAGGCAGGAGCCGTATGCGGTAGTCCCGCACGTACGGATCTGTGCGGG                                                                                                                                                                                                                                             <  1:304321/76‑1                                                                                                                                                                      ATCGCTTCGCGTCACATACCCGAGGCAGGAGCCGTATGCGGTAGTCCCGCACGTACGGATCTGTGC                                                                                                                                                                                                                                                >  2:710630/1‑66                                                                                                                                                                                                                                    GTGCGGGACTACCGCATACGGCTCCTGCCTCGGGTATGTGACGCGAAGCGATCCTCAGGGTAAGGGTGTGCATTTCTGGGCCTAGGTATGTAGAGATCAGCAAGGCGTCCATAGCGTGACCATTGAAGTCGATTACGCTGGCTACGACGTTTGAGGGCTTGCCGCCATAAACGGCAGACCGCCGAACGAAAACCACCCAGACGTGTCAGGTTTCCCGGCACCGCGTGGTAATTGA         >  1:697732/1‑235                                                                                                                                                                                                                                      GCGGGACTACCGCATACGGCTCCTGCCTCGGGTATGTGACGCGAAGCGATCCTCAGGGTAAGGGTGTGCATTTCTGGGCCTAGGTATGTAGAGATCAGCAAGGCGTCCATAGCGTGACCATTGAAGTCGATTACGCTGGCTACGACGTTTGAGGGCTTGCCGCCATAAACGGCAGACCGCCGAACGAAAACCACCCAGACGTGTCAGGTTTCCCGGCACCGCGTGGTAATTGAAGT      <  1:425528/236‑1                                                                                                                                                                                                                                         GGACTACCGCATACGGCTCCTGCCTCGGGTATGTGACGCGGAGCGATCCTCAGGGTAAGGGTGTGCATTTCTGGGGCTAGGGATGTAGGGATCAGCAAGGCGTCCATAGCGTGACCATTGAAGTCGTTTACGCTG                                                                                                        >  2:958145/1‑135                                                                                                                                                                                                                                         GGACTACCGCATACGGCTCCTGCCTCGGGTATGTGACGCGAAGCGATCCTCAGGGTAAGGGTGTGCATTTCTGGGCCTAGGTATGTAGAGATCAGCAAGGCGTCCATAGCGTGACCATTGAAGTCGATTACGCTGGCTACGACGTTTGAGGGCTTGCCGCCATAAACGGCAGACCGCCGAACGAAAACCACCCAGACGTGTCAGGTTTCCCGGCACCGCGcg                 >  2:123600/1‑220                                                                                                                                                                                                                                          GACTACCGCATACGGCTCCTGCCTCGGGTATGTGACGCGAAGCGATCCTCAGGGTAAGGGTGTGCATTTCTGGGCCTAGGTATGTAGAGATCAGCAAGGCGTCCATAGCGTGACCATTGAAGTCGATTACGCTGGCTACGACGTTTGAGGGCTTGCCGCCATAAACGGCAGACCGCCGAACGAAAACCACCCAGACGTGTCAGGTTTCCCGGCACCGCGTGGTAATTGAAGTAACC  <  1:556555/236‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       CGGGAAACCTGACACGTCTGGGTGGTTTTCGTTCGGCGGTCTGCCGTTTATGGCGGCAAGCCCTCAAACGTCGTAGCCAGCGTAATCGACTTCAATGGTCACGCTATGGACGCCTTGCTGATCTCTACATACCTAGGCCCAGAAATGCACACCCTTACCCTGAGGATCGCTTCGCGTCACATACCCGAGGCAGGAGCCGTATGCGGTAGTCCCGCACGTACGGATCTGTGCGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/5039590‑5039357 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgcgggACTACCGCATACGGCTCCTGCCTCGGGTATGTGACGCGAAGCGATCCTCAGGGTAAGGGTGTGCATTTCTGGGCCTAGGTATGTAGAGATCAGCAAGGCGTCCATAGCGTGACCATTGAAGTCGATTACGCTGGCTACGACGTTTGAGGGCTTGCCGCCATAAACGGCAGACCGCCGAACGAAAACCACCCAGACGTGTCAGGTTTCCCGGCACCGCGTGGTAATTGAAGTAACC  >  AE015451/5039381‑5039615

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.