New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 5138413	38 (0.660)	3 (0.060)	3/322	NT	8.0%	coding (600/963 nt)	PP_4523	putative Agmatinase
	?	AE015451	= 5138512	33 (0.610)					coding (699/963 nt)	PP_4523	putative Agmatinase

ACCCTGGGGGGCGATCACACCATCACCCTGCCGATCCTGCGTGCGCTGCACAAGAAACACGGCAAGATCGGCCTGGTACACATCGATGCCCACGCCGACGTCAACGACCACATGTTCGGCGAGAAGATCGCCCACGGCACCACCTTCCGCCGCGCCGTGGAAGAAGGCCTGCTCGACTGCGACCGCGTGGTGCAGATCGGCCTGCGCGCCCAGGGCTACACCGCCGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/5138186‑5138413 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caccgccgacCTTTTCCCGCACTTCGGCCATCAGTGGCTCCAGTGACTTGTGCCAGCACTCTTCGGCCTGGACCACGCGGAAGCCCTGGCGACGGCTCCAGTTGAAGTCGTCGGCGGTGTAGCCCTGGGCGCGCAGGCCGATCTGCACCACGCGGTCGCAGTCGAGCAGGCCTTCTTCCACGGCGCGGCGGAAGGTGGTGCCGTGGGC  <  AE015451/5138512‑5138315                                                                                                                                                                                                                                                                                                                                                                                                                                            ACCCTGGGGGGCGATCACACCACCACCCTGCCGATCCTGCGTGCGCTGCACAAGAAACACGGCAAGATCGGCCTGGTACACATCGATGCCCACGCCGACGTCAACGACCACATGTTCGGCGAGAAGATCGCCCACGGCACCACCTTCCGCCGCGCCGTGGAAGAAGGCCTGCTCGACTGCGACCGCGTGGTGCAGATCGGCCTGCGCGCCCAGGGCTACACCG                                                                                                                                                                                                             <  1:675449/223‑1                                                                                                                   TTCGGCGAGAAGATCGCCCACGGCACCACCTTCCGCCGCGCCGTGGAAGAAGGCCTGCTCGACTGCGACCGCGTGGTGCAGATCGGCCTGCGCGCCCAGGGCTACACCGCCGACCTTTTCCCGCACTTCGGCCATCAGTGGCTCCAGTGACTTGTGCCAGCACTCTTCGGCCTGGACC                                                                                                                                        <  2:332899/178‑1                                                                                                                                                                              CGACTGCGACCGCGTGGTGCAGATCGGCCTGCGCGCCCAGGGCTACACCGCCGACCTTTTCCCGCACTTCGGCCATCAGTGGCTCCAGTGACTTGTGCCAGCACTCTTCGGCCTGGACCACGCGGAAGCCCTGGCGACG                                                                                                                    >  1:724625/1‑139                                                                                                                                                                                                                GCCCAGGGCTACACCGCCGACCTTTTCCCGCACTTCGGCCATCAGTGGCTCCAGTGACTTGTGCCAGCACTCTTCGGCCTGGACCACGCGGAAGCCCTGGCGACGGCTCCAGTTGAAGTCGTCGGCGGTGTAGCCCTGGGCGCGCAGGCCGATCTGCACCACGCGGTCGCAGTCGAGCAGGCCTTCTTCCACGGCGCGGCGGAAGGTGGTGCCGTGGGC  >  1:684832/1‑219                                                                                                                                                                                                                             CCGCCGACCTTTTCCCGCACTTCGGCCATCAGTGGCTCCAGTGACTTGTGCCAGCACTCTTCGGCCTGGACCACGCGGAAGCCCTGGCGACGGCTCCAGTTGAAGTCGTCGGCGGTGTAGCCCTGGGCGCGCAGGCCGATCTGCACCACGCGGTCGCAGTCGAGCAGGCCTTCTTCCACGGCGCG                       >  2:544696/1‑185                                                                                                                                                                                                                                                                                                                                                                                                                                            ACCCTGGGGGGCGATCACACCATCACCCTGCCGATCCTGCGTGCGCTGCACAAGAAACACGGCAAGATCGGCCTGGTACACATCGATGCCCACGCCGACGTCAACGACCACATGTTCGGCGAGAAGATCGCCCACGGCACCACCTTCCGCCGCGCCGTGGAAGAAGGCCTGCTCGACTGCGACCGCGTGGTGCAGATCGGCCTGCGCGCCCAGGGCTACACCGCCGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/5138186‑5138413 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caccgccgacCTTTTCCCGCACTTCGGCCATCAGTGGCTCCAGTGACTTGTGCCAGCACTCTTCGGCCTGGACCACGCGGAAGCCCTGGCGACGGCTCCAGTTGAAGTCGTCGGCGGTGTAGCCCTGGGCGCGCAGGCCGATCTGCACCACGCGGTCGCAGTCGAGCAGGCCTTCTTCCACGGCGCGGCGGAAGGTGGTGCCGTGGGC  <  AE015451/5138512‑5138315

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.