New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 5138413	38 (0.660)	3 (0.060)	3/322	NT	8.0%	coding (600/963 nt)	PP_4523	putative Agmatinase
	?	AE015451	= 5138512	33 (0.610)					coding (699/963 nt)	PP_4523	putative Agmatinase

ACGACCACATGTTCGGCGAGAAGATCGCCCACGGCACCACCTTCCGCCGCGCCGTGGAAGAAGGCCTGCTCGACTGCGACCGCGTGGTGCAGATCGGCCTGCGCGCCCAGGGCTACACCGCCGACGACTTCAACTGGAGCCGTCGCCAGGGCTTCCGCGTGGTCCAGGCCGAAGAGTGCTGGCACAAGTCACTGGAGCCACTGATGGCCGAAGTGCGGGAAAAGGTCGGCGGTGGCCCGGTTTACCTGTCTTTCGACATCGATGGCATCGACCCGGCCTGGGCGCCCGGTACCGGAACCCCGGAAATCGGCGGCTTGACCACCATCCAGGCGATGGAGATCATTCGCGGCTGCCACGGCCTGGACCTGATCGGCTGTGACCTTGTCGAAGTCTCCCCGCCTTACGACACCACCGGCAACACCTCGCTGCTCGGTGCCAACCTGCTGTTCGAGATGC  >  AE015451/5138289‑5138744                                                                                                                                                                                                                                |                                                                                                                                                                                                                                         aCGACCACATGTTCGGCGAGAAGATCGCCCACGGCACCACCTTCCGCCGCGCCGTGGAAGAAGGCCTGCTCGACTGCGACCGCGTGGTGCAGATCGGCCTGCGCGCCCAGGGCTACACCGCCGACGACTTCAACTGGAGCCGTCGCCAGGGCTTCCGCGTGGTCCAGGCCGAAGAGTGCTGGCACAAGTCACTGGAGCCACTGATGGCCGAAGTGCGGGAAAAGGTCGGCGGTGGc                                                                                                                                                                                                                              <  1:459249/236‑1 (MQ=255)        taTGTTCGGCGAGAAGATCGCCCACGGCACCACCTTCCGCCGCGCCGTGGAAGAAGGCCTGCTCGACTGCGACCGCGTGGTGCAGATCGGCCTGCGCGCCCAGGGCTACACCGCCGACGACTTCAACTGGAGCCGTCGCCAGGGCTTCCGCGTGGTCCAGGCCGAAGAGTGCTGGCACAAGTCACTGGAGCCACTGATGGCCGAAGTGCGGGAAAAGGTCGGCGGTGGCCCGGttt                                                                                                                                                                                                                       <  2:837856/235‑1 (MQ=255)                   agaagaTCGCCCACGGCACCACCTTCCGCCGCGCCGTGGAAGAAGGCCTGCTCGACTGCGACCGCGTGGTGCAGATCGGCCTGCGCGCCCAGGGCTACACCGCCGACGACTTCAACTGGAGCCGTCGCCAGGGCTTCCGCGTGGTCCAGGCCGAAGAGTGCTGGCACAAGTCACTGGAGCCACTGATGGCCGAAGTGCGGGAAAAGGTCGGCGGTGGCCCGGttt                                                                                                                                                                                                                       <  2:647705/225‑1 (MQ=255)                           gCCCACGGCACCACCTTCCGCCGCGCCGTGGAAGAAGGCCTGCTCGACTGCGACCGCGTGGTGCAGATCGGCCTGCGCGCCCAGGGCTACACCGCCGACGACTTCAACTGGAGCCGTCGCCAGGGCTTCCGCGTGGTCCAGGCCGAAGAGTGCTGGCACAAGTCACTGGAGCCACTGATGGCCGAAGTGCGGGAAAAGgtcggcggtgtagccctgggc                                                                                                                                                                                                                     >  1:684832‑M2/1‑198 (MQ=255)                                        ccTTCCGCCGCGCCGTGGAAGAAGGCCTGCTCGACTGCGACCGCGTGGTGCAGATCGGCCTGCGCGCCCAGGGCTACACCGCCGACGACTTCAACTGGAGCCGTCGCCAGGGCTTCCGCGTGGTCCAGGCCGAAGAGTGCTGGCACAAGTCACTGGAGCCACTGATGGCCGAAGTGCGGGAAAAGGTCGGCGGTGGCCCGGTTTACCTGTCTTTCGACATCGATGGCATCGAccc                                                                                                                                                                                        >  1:357809/1‑235 (MQ=255)                                                cgcgccgTGGAAGAAGGCCTGCTCGACTGCGACCGCGTGGTGCAGATCGGCCTGCGCGCCCAGGGCTACACCGCCGACGACTTCAACTGGAGCCGTCGCCAGGGCTTCCGCGTGGTCCAGGCCGAAGAGTGCTGGCACAAGTCACTGGAGCCACTGATGGCCGAAGTGCGGGAAAAGgtcggcgg                                                                                                                                                                                                                                  >  2:544696‑M2/1‑177 (MQ=255)                                                     cgTGGAAGAAGGCCTGCTCGACTGCGACCGCGTGGTGCAGATCGGCCTGCGCGCCCAGGGCTACACCGCCGACGACTTCAACTGGAGCCGTCGCCAGGGCTTCCGCGTGGTCCAGGCCGAAGAGTGCTGGCACAAGTCACTGGAGCCACTGATGGCCGAAGTGCGGGAAAAGGTCGGCGGTGGCCCGGTTTACCTGTCTTTCGACATCGATGGCATCGACCCGGCCTGGGCGCCCg                                                                                                                                                                          >  1:1079706/1‑236 (MQ=255)                                                             aagGCCTGCTCGACTGCGACCGCGTGGTGCAGATCGGCCTGCGCGCCCAGGGCTACACCGCCGACGACTTCAACTGGAGCCGTCGCCAGGGCTTCCGCGTGGTCCAGGCCGAAGAGTGCTGGCACAAGTCACTGGAGCCACTGATGGCCGAAGTGCGGGAAAAGGTCGGCGGTGGCCCGGttt                                                                                                                                                                                                                       <  1:466113/183‑1 (MQ=255)                                                                    gCTCGACTGCGACCGCGTGGTGCAGATCGGCCTGCGCGCCCAGGGCTACACCGCCGACGACTTCAACTGGAGCCGTCGCCAGGGCTTCCGCGTGGTCCAGGCCGAAGAGTGCTGGCACAAGTCACTGGAGCCACTGATGGCCGAAGTGCGGGAAAAGGTCGGCGGTGGCCCGGTTTACCTGTCTTTCGACATCGATGGCATCGACCCGGCCTGGGCGCCGGGTACCGGAAc                                                                                                                                                                >  1:560698/1‑231 (MQ=255)                                                                       cGACTGCGACCGCGTGGTGCAGATCGGCCTGCGCGCCCAGGGCTACACCGCCGACGACTTCAACTGGAGCCGTCGCCAGGGCTTCCGCGTGGTCCAGGCCGAAGAGTGCTGGCACAAGTCACTGGAGCCACTGATGGCCGAAGTGCGGGAAAAGGTCGGCGGTGGCCCGGGTTACCTGTCttt                                                                                                                                                                                                             >  2:174733/1‑183 (MQ=255)                                                                        gACTGCGACCGCGTGGTGCAGATCGGCCTGCGCGCCCAGGGCTACACCGCCGACGACTTCAACTGGAGCCGTCGCCAGGGCTTCCGCGTGGTCCAGGCCGAAGAGTGCTGGCACAAGTCACTGGAGCCACTGATGGCCGAAGTGCGGGAAAAGGTCGGCGGTGGCCCGGttt                                                                                                                                                                                                                       <  1:609658/172‑1 (MQ=255)                                                                         aCTGCGACCGCGTGGTGCAGATCGGCCTGCGCGCCCAGGGCTACACCGCCGACGACTTCAACTGGAGCCGTCGCCAGGGCTTCCGCGTGGTCCAGGCCGAAGAGTGCTGGCACAAGTCACTGGAGCCACTGATGGCCGAAGTGCGGGAAAAGGTCGGCGGTGGCCCGGTTTACCTGTCTTTCGACATCGATGGCATCGACCCGGCCTGGGCGCCCGGTACCGGAACCCCGGAAAt                                                                                                                                                       <  1:510484/235‑1 (MQ=255)                                                                                    gtggtgCAGATCGGCCTGCGCGCCCAGGGCTACACCGCCGACGACTTCAACTGGAGCCGTCGCCAGGGCTTCCGCGTGGTCCAGGCCGAAGAGTGCTGGCACAAGTCACTGGAGCCACTGATGGCCGAAGTGCGGGAAAAGGTCGGCGGTGGCCCGGTTTACCTGTCTTTCGACATCGATGGCATCGACCCGGCCTGGGCGCCCGGTACCGGAACCCCGGAAATCGGCGGCTTGa                                                                                                                                            <  1:711634/235‑1 (MQ=255)                                                                                                         gcCCAGGGCTACACCGCCGACGACTTCAACTGGAGCCGTCGCCAGGGCTTCCGCGTGGTCCAGGCCGAAGAGTGCTGGCACAAGTCACTGGAGCCACTGATGGCCGAAGTGCGGGAAAAGGTCGGCGGTGGCCCGGTTTACCTGTCTTTCGACATCGATGGCATCGACCCGGCCTGGGCGccc                                                                                                                                                                           >  2:427787/1‑183 (MQ=255)                                                                                                                          cgacgaCTGCAACTGGAGCCGTCGCCAGGGCTTCCGCGTGGTCCAGGCCGAAGAGTGCTGGCACAAGTCACTGGAGCCACTGATGGCCGAAGTGCGGGAAAAGGTCGGCGGTGGCCCGGTTTACCTGTCTTTCGACATCGATGGCATCGACCCGGCCTGGGCGCCCGGTACCGGAACCCCGGAAATCGGCGGCTTGACCACCATCCAGGCGATGGAGATCATTCGCGGCTGCCACg                                                                                                     <  1:428667/236‑1 (MQ=255)                                                                                                                            acgacTTCAACTGGAGCCGTCGCCAGGGCTTCCGCGTGGTCCAGGCCGAAGAGTGCTGGCACAAGTCACTGGAGCCACTGATGGCCGAAGTGCGGGAAAAGGTCGGCGGTGGCCCg                                                                                                                                                                                                                           >  2:743240/1‑116 (MQ=255)                                                                                                                            acgacTTCAACTGGAGCCGTCGCCAGGGCTTCCGCGTGGTCCAGGCCGAAGAGTGCTGGCACAAGTCACTGGAGCCACTGATGGCCGAAGTGCGGGAAAAGGTCGGCGGTGGCCCGGTTTACCTGTCTTTCg                                                                                                                                                                                                           >  2:981681/1‑132 (MQ=255)                                                                                                                             cgacTTCAACTGGAGCCGTCGCCAGGGCTTCCGCGTGGTCCAGGCCGAAGAGTGCTGGCACAAGTCACTGGAGCCACTGATGGCCGAAGTGCGGGAAAAGGTCGGCGGTGGCCCGGTTTACCTGTCTTTCGACATCGATGGCATCGACCCGGCCTGGGCGCCCGGTACCGGAACCCCGGAAATCGGCGGCTTGACCACCATCCAGGCg                                                                                                                              <  2:506740/208‑1 (MQ=255)                                                                                                                                   cAACTGGCGCCGGCGCCAGGGCTTCCGCGTGGTCCAGGCCGAAGAGTGCTGGCACAAGTCACTGGAGCCACTGATGGCCGAAGTGCGGGAAAAGGTCGGCGGTGGCCCGGTTTACCTGTCTTTCGACATCGATGGCATCGACCCGGCCTGGGCGCCCGGTACCGGAACCCCGGAAATCGGCGGCtt                                                                                                                                              <  1:180930/186‑1 (MQ=255)                                                                                                                                            ccGTCGCCAGGGCTTCCGCGTGGTCCAGGCCGAAGAGTGCTGGCACAAGTCACTGGAGCCACTGATGGCCGAAGTGCGGGAAAAGGTCGGCGGTGGCCCGGTTTACCTGTCTTTCGACATCGATGGCATCGACCCGGCCTGGGCGCCCGGTACCGGAACCCCGGAAATCGGCGGCTTGACCACCATCCAGGCGATGGAGATCATTCGCGGCTGCCACGGCCTGGACCTGATc                                                                                       >  2:904654/1‑232 (MQ=255)                                                                                                                                             cGTCGCCAGGGCTTCCGCGTGGTCCAGGCCGAAGAGTGCTGGCACAAGTCACTGGAGCCACTGATGGCCGAAGTGCGGGAAAAGgtcggcggtgtagccctgggcgcgcaggccgatctgcaccacgcggtcgcagtcg                                                                                                                                                                                   >  1:724625‑M2/1‑84 (MQ=255)                                                                                                                                             cGTCGCCAGGGCTTCCGCGTGGTCCAGGCCGAAGAGTGCTGGCACAAGTCACTGGAGCCACTGATGGCCGAAGTGCGGGAAAAGGTCGGCGGTGGCCCGGTTTACCTGTCTTTCGACATCGATGGCATCGACCCGGCCTGGgc                                                                                                                                                                               <  1:1075504/143‑1 (MQ=255)                                                                                                                                              gTCGCCAGGGCTTCCGCGTGGTCCAGGCCGAAGAGTGCTGGCACAAGTCACTGGAGCCACTGATGGCCGAAGTGCGGGAAAAGGTCGGCGGTGGCCCGGTGTACCTGTCTTTCGACATCGATGGCATCGACCCGGCCTGTGCGCCCGGTACCGGAACCCCGGa                                                                                                                                                          >  2:787988/1‑163 (MQ=255)                                                                                                                                                              cgTGGTCCAGGCCGAAGAGTGCTGGCACAAGTCACTGGAGCCACTGATGGCCGAAGTGCGGGAAAAGGTCGGCGGTGGCCCGGTTTACCTGTCTTTCGACATCGATGGCATCGACCCGGCCTGGGCGCCCGGTACCGGAACCCCGGAAATCGGCGGCTTGACCACCATCCAGGCGATGGAGATCATTCGCGGCTGCCACGGCCTGGACCTGATCGGCTGTGACCTTGTCGAAGtct                                                                 <  1:407626/236‑1 (MQ=255)                                                                                                                                                                 ggTCCAGGCCGAAGAGTGCTGGCACAAGTCACTGGAGCCACTGATGGCCGAAGTGCGGGAAAAGgtcggcggtgtagccctgggcgcgcaggccgatctgcaccacgcggtcgcagtcgagcaggccttcttccacggcgcggcggaaggtggtgccgtgggcgatcttctcgccgaa                                                                                                                        <  2:332899‑M2/178‑115 (MQ=255)                                                                                                                                                                      aGGCCGAAGAGTGCTGGCACAAGTCACTGGAGCCACTGATGGCCGAAGTGCGGGAAAAGGTCGGCGGTGGCCCGGTTTACCTGTCTTTCGACATCGATGGCATCGACCCGGCCTGGGCGCCCGGTACCGGAACCCCGGAAATCGGCGGCTTGACCACCATCCAGGCGATGGAGATCATTCGCGGCTGCCACGGCCTGGACCt                                                                                           <  1:226458/202‑1 (MQ=255)                                                                                                                                                                         ccGAAGAGTGCTGGCACAAGTCACTGGAGCCACTGATGGCCGAAGTGCGGGACAAGGTCGGCGGTGGCCCGGTTTACCTGTCTTTCGACATCGATGGCATCGACCCGGCCTGGGCGCCCGGTACCGGCACCCCGGAAATCGGCGGCTTGACCACCATCCa                                                                                                                                  >  1:1039701/1‑160 (MQ=255)                                                                                                                                                                            aaGAGTGCTGGCACAAGTCACTGGAGCCACTGATGGCCGAAGTGCGGGAAAAGGTCGGCGGTGGCCCGGTTTACCTGTCTTTCGACATCGATGGCATCGACCCGGCCTGGGCGCCCGGTACCGGAACCCCGGAAATCGGCGGCTTGACCACCATCCAGGCGATGGAGATCATTCGCGGCTGCCACGGCCTGGACCTGATCGGCTGTGACCTTGTCGAAGTCTCCCCGCCTTAc                                                      >  2:509630/1‑233 (MQ=255)                                                                                                                                                                                gTGCTGGCACAAGTCACTGGAGCCACTGATGGCCGAAGTGCGGGAAAAGGTCGGCGGTGGCCCGGTTTACCTGTCTTTCGACATCGATGGCATCGACCCGGCCTGGGCGCCCGGTACCGGAACCCAGGAAATCGGCGGCTTGAACACCATCCAGGCGATGGAGATCATTAGCGGCTGCAACGGCCTGGACCGGATCGGCtgtg                                                                                >  1:73808/1‑203 (MQ=255)                                                                                                                                                                                    tGGCACAAGTCACTGGAGCCACTGATGGCCGAAGTGCGGGAAAAGGTCGGCGGTGGCCCGGtt                                                                                                                                                                                                                        >  2:271646/1‑63 (MQ=255)                                                                                                                                                                                              cACTGGAGCCACTGATGGCCGAAGTGCGGGAAAAGGTCGGCGGTGGCCCGGTTTACCTGTCTTTCGACATCGATGGCCTCGACCCGGCCTGGGCGCCCGGTACCGGAACCCCGGAAATCGGCGCCTTGACCACCATCCCGGCg                                                                                                                              >  2:46292/1‑143 (MQ=255)                                                                                                                                                                                              cACTGGAGCCACTGATGGCCGAAGTGCGGGAAAAGGTCGGCGGTGGCCCGGTTTACCTGTCTTTCGACATCGATGGCATCGACCCGGCCTGGGCGCCCGGTACCGGAACCCCGGAAATCGGCGGCTTGACCACCATCCAGGCGATGGAGATCATTCGCGGCTGCCACGGCCTGGAc                                                                                             >  2:360169/1‑176 (MQ=255)                                                                                                                                                                                              cACTGGAGCCACTGATGGCCGAAGTGCGGGAAAAGGTCGGCGGTGGCCCGGGTTACCTGTCTTTCGACATCGATGGCATCGACCCGGCCTGGGCGCCCGGTACCGGAACCCCGGAAATCGGCGGCTTGACCACCCTCCa                                                                                                                                  >  2:311454/1‑139 (MQ=255)                                                                                                                                                                                                           gATGGCCGAAGTGCGGGAAAAGGTTGGCGGTGGCCCGGTTTACCTGTCTTTCGACATCGATGGCATCGACCCGGCCTGGGCGCCCGGTACCGGAACCCCGGAAATCGGCGGCTTGACCACCATCCAGGCGATGGAGATCATTCGCGGCTGCCACGGCCTGGACCGGATCGGCTGTCACCTTGTcaa                                                                      >  1:591892/1‑184 (MQ=255)                                                                                                                                                                                                           gATGGCCGAAGTGCGGGAAAAGGTCGGCGGTGTCCCGGTTTACCTGTCTTTCGACATCGATGGCATCGACCCGGCCTGGGCTCCCg                                                                                                                                                                          >  1:243204/1‑86 (MQ=255)                                                                                                                                                                                                            aTGGCCGAAGTGCGGGAAAAGGTCGGCGGTGGCCCGGTTTACCTGTCTTTCGACATCGATGGCATCGACCCGGCCTGGGCGCCCGGTACCGGAACCCCGGAAATCGGCGGCTTGACCACCATCCAGGCGATGGAGATCATTCGCGGCTGCCACGGCCTGGACCTGATCGGCTGTGACCTTGTCGAAGTCTCCCCGCCTTACGACACCACCGGCAACACCTCGCTGCTCGGTGCCaa                   >  1:493380/1‑236 (MQ=255)                                                                                                                                                                                                                tcGAAGCGCGGGAAAAGGTCGGCGGTGGCCCGGTTTACCAATCTTTCGACATCGATGGCATc                                                                                                                                                                                             <  2:449044/61‑1 (MQ=255)                                                                                                                                                                                                                 cGAAGTGCGGGAAAAGGTCGGGGGGGGCCCGGTTTACCCGGCTTTGGACATCGa                                                                                                                                                                                                    >  2:110993/1‑54 (MQ=255)                                                                                                                                                                                                                      tGCGGGAAAAGGTCGGCGGTGGCCCGGTTTACCTGTCTTTCGACATCGATGGCATCGACCCGGCCTGGGCGCCCGGTACCGGAACCCCGGAAATCGGCGGCTTGACCACCATCCAGGCGATGGAGATCATTCGCGGCTGCCACGGCCTGGACCTGATCGGCTGTGACCTTGTCGAAGtct                                                                 <  1:992220/180‑1 (MQ=255)                                                                                                                                                                                                                             aaaGGTCGGCGGTGGCCCGGTTTACCTGTCTTTCGACATCGATGGCATCGACCCGGCCTGGGCGCCCGGTACCGGAACCCCGGAAATCGGCGGCTTGACCACCATCCAGGCGATGGAGATCATTCGCGGCTGCCACGGCCTGGACCTGATCGGCTGTGACCTTGTCGAAGTCTCCCCGCCTTACGACACCACCGGCAACACCTCGCTGCTCGGTGCCAACCTGCTGTTCGAGATGc  <  1:311457/236‑1 (MQ=255)                                                                                                                                                                                                                                |                                                                                                                                                                                                                                         ACGACCACATGTTCGGCGAGAAGATCGCCCACGGCACCACCTTCCGCCGCGCCGTGGAAGAAGGCCTGCTCGACTGCGACCGCGTGGTGCAGATCGGCCTGCGCGCCCAGGGCTACACCGCCGACGACTTCAACTGGAGCCGTCGCCAGGGCTTCCGCGTGGTCCAGGCCGAAGAGTGCTGGCACAAGTCACTGGAGCCACTGATGGCCGAAGTGCGGGAAAAGGTCGGCGGTGGCCCGGTTTACCTGTCTTTCGACATCGATGGCATCGACCCGGCCTGGGCGCCCGGTACCGGAACCCCGGAAATCGGCGGCTTGACCACCATCCAGGCGATGGAGATCATTCGCGGCTGCCACGGCCTGGACCTGATCGGCTGTGACCTTGTCGAAGTCTCCCCGCCTTACGACACCACCGGCAACACCTCGCTGCTCGGTGCCAACCTGCTGTTCGAGATGC  >  AE015451/5138289‑5138744

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.