New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 5269311	58 (1.010)	4 (0.080)	4/314	NT	6.9%	coding (1028/1371 nt)	radA	DNA repair enzyme
	?	AE015451	= 5269297	55 (1.040)					coding (1042/1371 nt)	radA	DNA repair enzyme

TGGCACGCTTGAAGCCGTGCTTGGCCGCTTCCTTCAAGCGCTCCTGGCCACTGGGTACCGGGCGTACCTCGCCCGACAATCCGATCTCGCCAAACACCAGCAAACCATGGGCCAGTGGCCGGTTGCGCAAGCTCGACATCACCGCCGCCAGCAGGGCCAGGTCCGAAGCCGTTTCCAGCACCTTCACCCCGCCGACCACGTTGAGAAACACATCCTGGTCATGGGTCGGGATACCGCCATGGCGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/5269066‑5269311 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accgccatggcggtATCCCGACCCATGACCAGGATGTGTTTCTCAACGTGGTCGGCGGGGTGAAGGTGCTGGAAACGGCTTCGGACCTGGCCCTGCTGGCGGCGGTGATGTCGAGCTTGCGCAACCGGCCACTGGCCCATGGTTTGCTGGTGTTTGGCGAGATCGGATTGTCGGGCGAGGTACGCCCGGTACCCAGTGGCCAGGA  <  AE015451/5269297‑5269107                                                                                                                                                                                                                                                                                                                                                                                                                                                       TGGCACGCTTGAAGCCGTGCTTGGCCGCTTCCTTCAAGCGCTCCTGGCCACTGGGTACCGGGCGTACCTCGCCCGACAATCCGATCTCGCCAAACACCAGCAAACCATGGGCCAGTGGCCGGTTGCGCAAGCTCGACATCACCGCCGCCAGCAGGGCCAGGTCCGAAGCCGTTTCCAGCACCTTCACCCCGCCGACCACGTTGAGAAACACATCCTGGTCATGGGTCGGGATACCG                                                                                                                                                                                                           >  1:337025/1‑236                                                                                                                                                GCCGCCAGCAAGGCCAGGTCCGAAGCCGTTTCCAGCACCTTCACCCCGCCGACCACGTTGAGAAACACATCCTGGTCATGGGTCGGGATACC                                                                                                                                                                                                            >  2:898568/1‑92                                                                                                                                                  CGCCAGCAGGGCCAGGTCCGAAGCCGTTTCCAGCACCTTCACCCCGCCGACCACGTTGAGAAACACATCCTGGTCATGGGTCGGGATACCGCCATGGCGGTATCCCGACCCATGACCAGGATGTGTTTCTCAACGTGGTCGGCGGGGTGAAGGTGCTGGAAACGGCTTC                                                                                                                             >  1:1080095/1‑169                                                                                                                                                                                           CCCCGCCGACCACGTTGAGAAACACATCCTGGTCATGGGTCGGGATACCGCCATGGCGGTATCCCGACCCATGACCAGGATGTGTTTCTCAACGTGGTCGGCGGGGTGAAGGGGCTGGAAACGGCTTCGGACCTGGCCCGGCTGGCGGCGGTGATGCCGA                                                                                             >  1:128121/1‑160                                                                                                                                                                                                   ACCACGTTGAGAAACACATCCTGGTCATGGGTCGGGATACCGCCATGGCGGTATCCCGACCCATGACCAGGATGTGTTTCTCAACGTGGTCGGCGGGGTGAAGGTGCTGGAAACGGCTTCGGACCTGGCCCTGCTGGCGGCGGTGATGTCGAG                                                                                            >  1:39053/1‑153                                                                                                                                                                                                                                 GTCGGGATACCGCCATGGCGGTATCCCGACCCATGACCAGGATGTGTTTCTCAACGTGGTCGGCGGGGTGAAGGTGCTGGAAACGGCTTCGGACCTGGCCCTGCTGGCGGCGGTGATGTCGAGCTTGCGCAACCGGCCACTGGCCCATGGTTTGCTGGTGTTTGGCGAGATCGGATTGTCGGGCGAGGTACGCCC                    >  2:992674/1‑195                                                                                                                                                                                                                                                  GCGGTATCCCGACCCATGACCAGGATGTGTTTCTCAACGTGGTCGGCGGGGTGAAGGTGCTGGAAACGGCTTCGGACCTGGCCCTGCTGGCGGCGGTGATGTCGAGCTTGCGCAACCGGCCACTGGCCCATGGTTTGCTGGTGTTTGGCGAGATCGGATTGTCGGGCGAGGTACGCCCGGTACCCAGTGGCCAGGA  >  1:369893/1‑196                                                                                                                                                                                                                                                                                                                                                                                                                                                       TGGCACGCTTGAAGCCGTGCTTGGCCGCTTCCTTCAAGCGCTCCTGGCCACTGGGTACCGGGCGTACCTCGCCCGACAATCCGATCTCGCCAAACACCAGCAAACCATGGGCCAGTGGCCGGTTGCGCAAGCTCGACATCACCGCCGCCAGCAGGGCCAGGTCCGAAGCCGTTTCCAGCACCTTCACCCCGCCGACCACGTTGAGAAACACATCCTGGTCATGGGTCGGGATACCGCCATGGCGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/5269066‑5269311 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accgccatggcggtATCCCGACCCATGACCAGGATGTGTTTCTCAACGTGGTCGGCGGGGTGAAGGTGCTGGAAACGGCTTCGGACCTGGCCCTGCTGGCGGCGGTGATGTCGAGCTTGCGCAACCGGCCACTGGCCCATGGTTTGCTGGTGTTTGGCGAGATCGGATTGTCGGGCGAGGTACGCCCGGTACCCAGTGGCCAGGA  <  AE015451/5269297‑5269107

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.