| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AE015451 | 5336714 = | 42 (0.730) | 6 (0.110) | 6/334 | NT | 12.6% | coding (164/1443 nt) | PP_4696 | Nitrogen regulation protein NR(I) |
| ? | AE015451 | 5336732 = | 42 (0.750) | coding (182/1443 nt) | PP_4696 | Nitrogen regulation protein NR(I) | |||||
CTCGGCTGGCGGTGCAGCAGCGGGGGCGTTCTGCCGGTCACGCAGAATACGCGCTACTGCCTGCAGCATCTCGTCGTGGTCGAAGGGCTTGGCGATGTAGTCCACCGCGCCCATTTTCATCGAGTCCACCGCTGAGCGCAGGCTGGCGTAACTGGTCATGATCAGCACCGGGGTGCCCTGGCCGAGCTTGATCAGCTCGGTGCCGGGCGCGCCGGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AE015451/5336931‑5336714‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcaCCGAGCTGATCAAGCTCGGCCAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGT > AE015451/5336732‑5336804 CTCGGCTGGCGGTGCAGCAGCGGGGGCGTTCTGCCGGTCACGCAGAATACGCGCTACTGCCTGCAGCATCTCGTCGTGGTCGAAGGGCTTGGCGATGTAGTCCACCGCGCCCATTTTCATCGAGTCCACCGCTGAGCGCAGGCTGGCGTAACTGGTCATGATCAGCACCGGGGTGCCCTGGCCGAGCTTGATCAGCTCGGTGCCGGGCGCGCCGGGCACCGAGCT < 1:561218/225‑1CTCGGCTGGCGGTGCAGCAGCGGGGGCGTTCTGCCGGTCACGCAGAATACGCGCTACTGCCTGCAGCATCTCGTCGTGGTCGAAGGGCTTGGCGATGTAGTCCACCGCGCCCATTTTCATCGAGTCCACCGCTGAGCGCAGGCTGGCGTAACTGGTCATGATCAGCACCGGGGTGCCCTGGCCGAGCTTGATCAGCTCGGTGCCGGGCGCGCCGGGCACCGAGCT > 2:561215/1‑225 GCAGCATCTCGTCGTGGTCGAAGGGCTTGGCGATGTAGTCCACCGCGCCCATTTTCATCGAGTCCACCGCTGAGCGCAGGCTGGCGTAACTGGTCATGATCCGCACCGGGGTGCCCTGGCCGAGCTTGATCAGCTCGGTGCCGGGCGCGCCGGGCACCGAGCTGATCAAGCTCGGCCAGGGCA < 1:830296/183‑1 GATGTAGTCCACCGCGCCCATTTTCATCGAGTCCACCGCTGAGCGCAGGCTGGCGTAACTGGTCATGATCAGCACCGGGGTGCCCTGGCCGAGCTTGATCAGCTCGGTGCCGGGCGCGCCGGGCACCGCGCTGATCAAGCTCGGCCAGGGCACCCCGGTGCTGATCATGACCAGTTACGCC < 1:929248/181‑1 TTTTCACCGAGTCCACCGCTGAGCGCAGGCTGGCGTAACTGGTCATGATCAGCACCGGGGTGCCCTGGCCGAGCTTGATCAGCTCGGTGCCGGGCGCGCCGGGCACCGAGCTGATCAAGCTCGGCCAGGGCACCCCGGTGCTGATCA < 1:129746/147‑1 ACTGGTCATGATCAGCACCGGGGTGCCCTGGCCGAGCTTGATCAGCTCGGTGCCGGGCGCGCCGGGCCCCGAGCTGATCAAGCTCGGCCAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGT < 1:155551/141‑1 gGATCAGCACCGGGGTGCCCTGGCCGAGCTTGATCAGCTCGGTGCCGGGCGCGCCGGGCACC < 2:128457/61‑1 CTCGGCTGGCGGTGCAGCAGCGGGGGCGTTCTGCCGGTCACGCAGAATACGCGCTACTGCCTGCAGCATCTCGTCGTGGTCGAAGGGCTTGGCGATGTAGTCCACCGCGCCCATTTTCATCGAGTCCACCGCTGAGCGCAGGCTGGCGTAACTGGTCATGATCAGCACCGGGGTGCCCTGGCCGAGCTTGATCAGCTCGGTGCCGGGCGCGCCGGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AE015451/5336931‑5336714‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcaCCGAGCTGATCAAGCTCGGCCAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGT > AE015451/5336732‑5336804 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |