New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AE015451 = 545955910 (0.170)3 (0.050) 3/324 NT 25.6% intergenic (+17/‑23) PP_4795/holA putative Lipoprotein/DNA polymerase III, delta subunit
?AE015451 = 5459561 8 (0.150)intergenic (+19/‑21) PP_4795/holA putative Lipoprotein/DNA polymerase III, delta subunit

ACGAGCGCGCCCAAGCCGAAGCTGCCGCGCTGGAGGCTGCCCGCCGCCAGCAAGCCGAGACGCCTCAGCAATCGCCACTGGAAGTACCGGGCAACTAAGCCCGCGAGGGGCGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/5459445‑5459559
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggggcgcccGAGGGCGCCCCTCGCGGGCTTAGTTGCCCGGTACTTCCAGTGGCGATTGCTGAGGCGTCTCGGCTTGCTGGCGGCGGGCAGCCTCCAGCGCGGCAGCTTCGGCTTGGGCGCGCTCGTCTGCTTTACGCTGCAGCTCATCCAGTTGGGGCGGGGACAGCATCTGCAAACGTACGACCAT  <  AE015451/5459561‑5459384
                                                                                                                                                                                                                                                                                                     
ACGAGCGCGCCCAAGCCGAAGCTGCCGCGCTGGAGGCTGCCCGCCGCCAGCAAGCCGAGACGCCTCAGCAATCGCCACTGGAAGTACCGGGCAACTAAGCCCGCGAG                                                                                                                                                                                            <  2:196907/107‑1
                                                acagAGCCGAGACGCCTCAGCAATCGCCACTGGAAGTACCGGGCAACTAAGCCCGCGAGGGGCGCCCGAGGGCGCCCCTCGCGGGCTTAGTTGCCCGGTACTTCCAGTGGCGATTGCTGAGGCGTCTCGGCTTGCTGGCGGCGGGCAGCCTCCAGCGCGGCAGCTTCGGCTTGGGCGCGCTCGTCTGCTTTACGCTGCAGCTCATCCAGTTGGGGCGGGGACAGCATCTGCAAAC            <  1:597792/231‑1
                                                            CGCCTCAGCAATCGCCACTGGAAGTACCGGGCAACTAAGCCCGCGAGGc                                                                                                                                                                                          >  2:225710/1‑48
                                                                  AGCAATCGCCACAGGAAGTACCGGGCAACTAAGCCCGCGAGGGGCGCCCGAGGGCGCCCCTCGCGGGCTTAGTTGCCCGGTACTTCCAGTGGCGATTGCTGAGGCGTCTCGGCTTGCTGGCGGCGGGCAGCCTCCAGCGCGGCAGCTTCGGCTTGGGTGCGCCCGTCTGCTTTACGCTGCtc                                               >  2:597789/1‑180
                                                                                             ACTAAGCCCGCGAGGGGCGCCCGAGGGCGCCCCTCGCGGGCTTAGTTGCCCGGTACTTCCAGTGGCGATTGCTGAGGCGTCTCGGCTTGCTGGCGGCGGGCAGCCTCCAGCGCGGCAGCTTCGGCTTGGGCGCGCTCGTCTGCTTTACGCTGCAGCTCATCCAGTTGGGGCGGG                            >  1:361349/1‑174
                                                                                                             GCGCCCGAGGGCGCCCCTCGCGGGCTTAGTTGCCCGGTACTTCCAGTGGCGATTGCTGAGGCGTCTCGGCTTGCTGGCGGCGGGCAGCCTCCAGCGCGGCAGCTTCGGCTTGGGCGCGCTCGTCTGCTTTACGCTGCAGCTCATCCAGTTGGGGCGGGGGCAGCATCTGCAAACGTACGACCAT  >  2:384717/1‑184
                                                                                                                                                                                                                                                                                                     
ACGAGCGCGCCCAAGCCGAAGCTGCCGCGCTGGAGGCTGCCCGCCGCCAGCAAGCCGAGACGCCTCAGCAATCGCCACTGGAAGTACCGGGCAACTAAGCCCGCGAGGGGCGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/5459445‑5459559
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggggcgcccGAGGGCGCCCCTCGCGGGCTTAGTTGCCCGGTACTTCCAGTGGCGATTGCTGAGGCGTCTCGGCTTGCTGGCGGCGGGCAGCCTCCAGCGCGGCAGCTTCGGCTTGGGCGCGCTCGTCTGCTTTACGCTGCAGCTCATCCAGTTGGGGCGGGGACAGCATCTGCAAACGTACGACCAT  <  AE015451/5459561‑5459384

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.