New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 5459559	10 (0.170)	3 (0.050)	3/324	NT	25.6%	intergenic (+17/‑23)	PP_4795/holA	putative Lipoprotein/DNA polymerase III, delta subunit
	?	AE015451	= 5459561	8 (0.150)					intergenic (+19/‑21)	PP_4795/holA	putative Lipoprotein/DNA polymerase III, delta subunit

ATGGTCGTACGTTTGCAGATGCTGTCCCCGCCCCAACTGGATGAGCTGCAGCGTAAAGCAGACGAGCGCGCCCAAGCCGAAGCTGCCGCGCTGGAGGCTGCCCGCCGCCAGCAAGCCGAGACGCCTCAGCAATCGCCACTGGAAGTACCGGGCAACTAAGCCCGCGAGGGGCGCCCTCGGGCGCCCCGCCTGTTCCCCATGAAACTCGCCCCCGCCCAACTCAACAAGCACCTGCAAGGCGCCCTGGCACCGGTCTACGTGGTCAGTGGCGACGACCCGCTGCTGTGCCAGGAAGCCGCCGACGCCAT  >  AE015451/5459384‑5459691                                                                                                                                                                                  |                                                                                                                                   aTGGTCGTACGTTTGCAGATGCTGCCCCCGCCCCAACTGGATGAGCTGCAGCGTAAAGCAGACGAGCGCGCCCAAGCCGAAGCTGCCGCGCTGGAGGCTGCCCGCCGCCAGCAAGCCGAGACGCCTCAGCAATCGCCACTGGAAGTACCGGGCAACTAAGCCCGCGAGGGGCGCCCTCgggcgc                                                                                                                              >  2:384717‑M2/1‑178 (MQ=255)        tACGTTTGCAGATGCTGTCCCCGCCCCAACTGGATGAGCTGCAGCGTAAAGCAGACGAGCGCGCCCAAGCCGAAGCTGCCGCGCTGGAGGCTGCCCGCCGCCAGCAAGCCGAGACGCCTCAGCAATCGCCACTGGAAGTACCGGGCAACTAAGCCCGCCAGGGGCGCCCTCGGGCGCCCCGCCTGTTCCCCATGAAACTCGCCCCCGCCCac                                                                                           >  2:778041/1‑211 (MQ=255)           gTTTGCAGATGCTGTCCCCGCCCCAACTGGATGAGCTGCAGCGTAAAGCAGACGAGCGCGCCCAAGCCGAAGCTGCCGCGCTGGAGGCTGCCCGCCGCCAGCAAGCCGAGACGCCTCAGCAATCGCCACTGGAAGTACCGGGCAACTAAGCCCGCGAGGGGCGCCCTCgggcgcccctcgcgggcttagttgcccggtacttccagtggcgattgctgaggcgtctcggctctgt                                                                 <  1:597792‑M2/235‑68 (MQ=255)                           cccGCCCCAACTGGATGAGCTGCAGCGTAAAGCAGACGAGCGCGCCCAAGCCGAAGCTGCCGCGCTGGAGGCTGCCCGCCGCCAGCAAGCCGAGACGCCTCAGCAATCGCCACTGGAAGTACCGGGCAACTAAGCCCGCGAGGGGCGCCCTCgggcgcccctcgcgggcttagt                                                                                                              >  1:361349‑M2/1‑152 (MQ=255)                                     cTGGATGAGCTGCATCGTAAAGCAGACGAGCGCGCCCAAGCCGAAGCTGCCGCGCTGGAGGCTGCCCGCCGCCAGCAAGCCGAGACGCCTCAGCAATCGCCACTGGAAGTACCGGGCAACTAAGCCCGCGAGGGGCGCCCTCGGGCGCCCCGCCTGTTCCCCATGAAACTCGCCCCCGCCCAACTCAACAAGCACCTGCAAGGCGCCCTGGCAc                                                            <  1:694887/214‑1 (MQ=255)                                            aGCTGCAGCGTAAAGCAGACGAGCGCGCCCAAGCCGAAGCTGCCGCGCTGGAGGCTGCCCGCCGCCAGCAAGCCGAGACGCCTCAGCAATCGCCACTGGAAGTACCGGGCAACTAAGCCCGCGAGGGGCGCCCTCGGGCGCCCCGCCTGTTCCCCATGAAACTCGCCCCCGCCCAACTCAACAAGCACCTGCAAGGCGCCCTGGCACCGGTCTACGTGGTCAGTGGCGACGACCCg                               <  1:571367/236‑1 (MQ=255)                                              gagcaGCGTAAAGCAGACGGGCGCACCCAAGCCGAAGCTGCCGCGCTGGAGGCTGCCCGCCGCCAGCAAGCCGAGACGCCTCAGCAATCGCCACTGGAAGTACCGGGCAACTAAGCCCGCGAGGGGCGCCCTCgggcgcccctcgcgggcttagttgcccggtacttcctgtggcgattgct                                                                                   >  2:597789‑M2/3‑133 (MQ=255)                                                                 aGCGCGCCCAAGCCGAAGCTGCCGCGCTGGAGGCTGCCCGCCGCCAGCAAGCCGAGACGCCTCAGCAATCGCCACTGGAAGTACCGGGCAACTAAGCCCGCGAGGGGCGCCCTCGGGCGCCCCGCCTGTTCCCCATGAAACTCGCCCCCGCCCAAcc                                                                                         >  2:1033303/1‑156 (MQ=255)                                                                                                                    ccGAGACGCCGCAGCAATCGCCACTGGAAGTACCGGGCAACTCAGCCCGCGAGGGGCGCCCTCGGGCGCCCCGCCTGTTCCCCATGAAACTCGCCCCCGCCCAACTCAACAAGCACCTGCAAGGCGCCCTGGCACCGGTCTACGTGGTCAGTGGCGACGACCCGCTGCTGTGCCAGGAAGCCGCCGAc       <  2:75295/188‑1 (MQ=255)                                                                                                                                aGCAATCGCCACTGGAAGTACCGGGCAACTAAGCCCGCGAGGGGCGCCCTCGGGCGCCCCGCCTGTTCCCCATGAAACTCGCCCCCGCCCAACTCAACAAGCACCTGCAAGGCGCCCTGGCACCGGTCTACGTGGTCAGTGGCGACGACCCGCTGCTGTGcc                     <  1:778044/162‑1 (MQ=255)                                                                                                                                      cGCCACTGGAAGTACCGGGCAACTAAGCCCGCGAGGGGCGCCCTCGGGCGCCCCGCCTGTTCCCCATGAAACTCGCCCCCGCCCAACTCAACAAGCACCTGCAAGGCGCCCTGGCACCGGTCTACGTGGTCAGTGGCGACGACCCGCTGCTGTGCCAGGAAGccgccg         <  2:892559/168‑1 (MQ=255)                                                                                                                                                    ccGGGCAACTAAGCCCGCGAGGGGCGCCCTCGGGCGCCCCGCCTg                                                                                                                      <  1:861947/45‑1 (MQ=255)                                                                                                                                                    ccGGGCAACTAAGCCCGCGAGGGGCGCCCTCGGGCGCCCCGCCTg                                                                                                                      >  2:861944/1‑45 (MQ=255)                                                                                                                                                                       aGGGGCGCCCTCGGGCGCCCCGCCTGTTCCCCATGAAACTCGCCCCCGCCCAACTCAACAAGCACCTGCAAGGCGCCCAAGCACCGGTCTACGTGGTCAGTGGCGACGACCCGCTGCTGTGCCCGGACGCCGCCGACGCCAt  >  2:838255/1‑142 (MQ=255)                                                                                                                                                                                  |                                                                                                                                   ATGGTCGTACGTTTGCAGATGCTGTCCCCGCCCCAACTGGATGAGCTGCAGCGTAAAGCAGACGAGCGCGCCCAAGCCGAAGCTGCCGCGCTGGAGGCTGCCCGCCGCCAGCAAGCCGAGACGCCTCAGCAATCGCCACTGGAAGTACCGGGCAACTAAGCCCGCGAGGGGCGCCCTCGGGCGCCCCGCCTGTTCCCCATGAAACTCGCCCCCGCCCAACTCAACAAGCACCTGCAAGGCGCCCTGGCACCGGTCTACGTGGTCAGTGGCGACGACCCGCTGCTGTGCCAGGAAGCCGCCGACGCCAT  >  AE015451/5459384‑5459691

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.